data_2RD8
#
_model_server_result.job_id            NnuV-eOyPFZrczUZ63vVyQ 
_model_server_result.datetime_utc      '2024-11-30 23:41:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rd8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":616}' 
#
_entry.id    2RD8 
#
_exptl.entry_id    2RD8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2RD8 
_cell.length_a            120.741 
_cell.length_b            120.741 
_cell.length_c            129.771 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RD8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PRO 194 B PRO 194 1_555 B N CME 195 B CME 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B C CME 195 B CME 195 1_555 B N HIS 196 B HIS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 290 n n 
P O2 PO4 sing 291 n n 
P O3 PO4 sing 292 n n 
P O4 PO4 sing 293 n n 
#
_atom_sites.entry_id                     2RD8 
_atom_sites.fract_transf_matrix[1][1]    0.008282 
_atom_sites.fract_transf_matrix[1][2]    0.004782 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BME A 1 655 655 BME BME . 
D 4 PO4 B 1 616 616 PO4 PO4 . 
E 4 PO4 B 1 617 616 PO4 PO4 . 
F 5 HOH A 1 656 1 HOH HOH . 
F 5 HOH A 2 657 4 HOH HOH . 
F 5 HOH A 3 658 5 HOH HOH . 
F 5 HOH A 4 659 8 HOH HOH . 
F 5 HOH A 5 660 9 HOH HOH . 
F 5 HOH A 6 661 10 HOH HOH . 
F 5 HOH A 7 662 11 HOH HOH . 
F 5 HOH A 8 663 12 HOH HOH . 
F 5 HOH A 9 664 15 HOH HOH . 
F 5 HOH A 10 665 17 HOH HOH . 
F 5 HOH A 11 666 18 HOH HOH . 
F 5 HOH A 12 667 20 HOH HOH . 
F 5 HOH A 13 668 22 HOH HOH . 
F 5 HOH A 14 669 23 HOH HOH . 
F 5 HOH A 15 670 24 HOH HOH . 
F 5 HOH A 16 671 29 HOH HOH . 
F 5 HOH A 17 672 30 HOH HOH . 
F 5 HOH A 18 673 31 HOH HOH . 
F 5 HOH A 19 674 32 HOH HOH . 
F 5 HOH A 20 675 34 HOH HOH . 
F 5 HOH A 21 676 35 HOH HOH . 
F 5 HOH A 22 677 37 HOH HOH . 
F 5 HOH A 23 678 38 HOH HOH . 
F 5 HOH A 24 679 39 HOH HOH . 
F 5 HOH A 25 680 40 HOH HOH . 
F 5 HOH A 26 681 42 HOH HOH . 
F 5 HOH A 27 682 43 HOH HOH . 
F 5 HOH A 28 683 45 HOH HOH . 
F 5 HOH A 29 684 47 HOH HOH . 
F 5 HOH A 30 685 48 HOH HOH . 
F 5 HOH A 31 686 49 HOH HOH . 
F 5 HOH A 32 687 50 HOH HOH . 
F 5 HOH A 33 688 51 HOH HOH . 
F 5 HOH A 34 689 53 HOH HOH . 
F 5 HOH A 35 690 54 HOH HOH . 
F 5 HOH A 36 691 55 HOH HOH . 
F 5 HOH A 37 692 56 HOH HOH . 
F 5 HOH A 38 693 57 HOH HOH . 
F 5 HOH A 39 694 59 HOH HOH . 
F 5 HOH A 40 695 60 HOH HOH . 
F 5 HOH A 41 696 64 HOH HOH . 
F 5 HOH A 42 697 65 HOH HOH . 
F 5 HOH A 43 698 69 HOH HOH . 
F 5 HOH A 44 699 71 HOH HOH . 
F 5 HOH A 45 700 72 HOH HOH . 
F 5 HOH A 46 701 73 HOH HOH . 
F 5 HOH A 47 702 102 HOH HOH . 
F 5 HOH A 48 703 103 HOH HOH . 
F 5 HOH A 49 704 106 HOH HOH . 
F 5 HOH A 50 705 107 HOH HOH . 
F 5 HOH A 51 706 108 HOH HOH . 
F 5 HOH A 52 707 109 HOH HOH . 
F 5 HOH A 53 708 110 HOH HOH . 
F 5 HOH A 54 709 111 HOH HOH . 
G 5 HOH B 1 618 2 HOH HOH . 
G 5 HOH B 2 619 3 HOH HOH . 
G 5 HOH B 3 620 6 HOH HOH . 
G 5 HOH B 4 621 13 HOH HOH . 
G 5 HOH B 5 622 14 HOH HOH . 
G 5 HOH B 6 623 16 HOH HOH . 
G 5 HOH B 7 624 19 HOH HOH . 
G 5 HOH B 8 625 21 HOH HOH . 
G 5 HOH B 9 626 25 HOH HOH . 
G 5 HOH B 10 627 26 HOH HOH . 
G 5 HOH B 11 628 27 HOH HOH . 
G 5 HOH B 12 629 28 HOH HOH . 
G 5 HOH B 13 630 33 HOH HOH . 
G 5 HOH B 14 631 36 HOH HOH . 
G 5 HOH B 15 632 41 HOH HOH . 
G 5 HOH B 16 633 44 HOH HOH . 
G 5 HOH B 17 634 52 HOH HOH . 
G 5 HOH B 18 635 58 HOH HOH . 
G 5 HOH B 19 636 61 HOH HOH . 
G 5 HOH B 20 637 63 HOH HOH . 
G 5 HOH B 21 638 67 HOH HOH . 
G 5 HOH B 22 639 68 HOH HOH . 
G 5 HOH B 23 640 70 HOH HOH . 
G 5 HOH B 24 641 74 HOH HOH . 
G 5 HOH B 25 642 75 HOH HOH . 
G 5 HOH B 26 643 101 HOH HOH . 
G 5 HOH B 27 644 112 HOH HOH . 
G 5 HOH B 28 645 113 HOH HOH . 
G 5 HOH B 29 646 114 HOH HOH . 
G 5 HOH B 30 647 115 HOH HOH . 
G 5 HOH B 31 648 116 HOH HOH . 
G 5 HOH B 32 649 117 HOH HOH . 
G 5 HOH B 33 650 118 HOH HOH . 
G 5 HOH B 34 651 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 4 58.31 -26.689 30.682 1 39.28 ? P PO4 616 B 1 
HETATM 2 O O1 PO4 . . . D 4 57.684 -25.95 31.804 1 37.57 ? O1 PO4 616 B 1 
HETATM 3 O O2 PO4 . . . D 4 57.445 -27.836 30.306 1 37.86 ? O2 PO4 616 B 1 
HETATM 4 O O3 PO4 . . . D 4 59.642 -27.19 31.101 1 37.86 ? O3 PO4 616 B 1 
HETATM 5 O O4 PO4 . . . D 4 58.469 -25.785 29.517 1 30.68 ? O4 PO4 616 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           5 
#