data_2RDA
#
_model_server_result.job_id            woevZMMOXPpDeDinpJknyg 
_model_server_result.datetime_utc      '2024-11-23 17:52:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":626}' 
#
_entry.id    2RDA 
#
_exptl.entry_id    2RDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2RDA 
_cell.length_a            123.794 
_cell.length_b            123.794 
_cell.length_c            284.766 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,N,O 1 1 
C,H,I,P 2 1,2 
D,J,Q 3 1,3 
E,F,K,L,M,R,S 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 94.922 
3 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 189.844 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     2RDA 
_atom_sites.fract_transf_matrix[1][1]    0.008078 
_atom_sites.fract_transf_matrix[1][2]    0.004664 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PO4 A 1 615 615 PO4 PO4 . 
H 2 PO4 C 1 616 616 PO4 PO4 . 
I 3 BME C 1 626 626 BME BME . 
J 2 PO4 D 1 617 617 PO4 PO4 . 
K 2 PO4 E 1 618 618 PO4 PO4 . 
L 2 PO4 E 1 619 619 PO4 PO4 . 
M 3 BME E 1 628 628 BME BME . 
N 4 HOH A 1 352 352 HOH HOH . 
N 4 HOH A 2 616 616 HOH HOH . 
N 4 HOH A 3 617 617 HOH HOH . 
N 4 HOH A 4 618 618 HOH HOH . 
N 4 HOH A 5 619 619 HOH HOH . 
N 4 HOH A 6 620 620 HOH HOH . 
N 4 HOH A 7 621 621 HOH HOH . 
N 4 HOH A 8 622 622 HOH HOH . 
N 4 HOH A 9 623 623 HOH HOH . 
N 4 HOH A 10 624 624 HOH HOH . 
N 4 HOH A 11 625 625 HOH HOH . 
N 4 HOH A 12 626 626 HOH HOH . 
N 4 HOH A 13 627 627 HOH HOH . 
N 4 HOH A 14 628 628 HOH HOH . 
N 4 HOH A 15 629 629 HOH HOH . 
N 4 HOH A 16 630 630 HOH HOH . 
N 4 HOH A 17 631 631 HOH HOH . 
N 4 HOH A 18 632 632 HOH HOH . 
N 4 HOH A 19 633 633 HOH HOH . 
N 4 HOH A 20 634 634 HOH HOH . 
N 4 HOH A 21 635 635 HOH HOH . 
N 4 HOH A 22 636 636 HOH HOH . 
N 4 HOH A 23 637 637 HOH HOH . 
N 4 HOH A 24 638 638 HOH HOH . 
N 4 HOH A 25 639 639 HOH HOH . 
N 4 HOH A 26 640 640 HOH HOH . 
N 4 HOH A 27 641 641 HOH HOH . 
N 4 HOH A 28 642 642 HOH HOH . 
N 4 HOH A 29 643 643 HOH HOH . 
N 4 HOH A 30 644 644 HOH HOH . 
N 4 HOH A 31 645 645 HOH HOH . 
N 4 HOH A 32 646 646 HOH HOH . 
N 4 HOH A 33 647 647 HOH HOH . 
N 4 HOH A 34 648 648 HOH HOH . 
N 4 HOH A 35 649 649 HOH HOH . 
N 4 HOH A 36 650 650 HOH HOH . 
N 4 HOH A 37 651 651 HOH HOH . 
N 4 HOH A 38 652 652 HOH HOH . 
N 4 HOH A 39 653 653 HOH HOH . 
N 4 HOH A 40 654 654 HOH HOH . 
N 4 HOH A 41 655 655 HOH HOH . 
N 4 HOH A 42 656 656 HOH HOH . 
N 4 HOH A 43 657 657 HOH HOH . 
N 4 HOH A 44 658 658 HOH HOH . 
N 4 HOH A 45 659 659 HOH HOH . 
N 4 HOH A 46 660 660 HOH HOH . 
N 4 HOH A 47 661 661 HOH HOH . 
N 4 HOH A 48 662 662 HOH HOH . 
N 4 HOH A 49 663 663 HOH HOH . 
N 4 HOH A 50 664 664 HOH HOH . 
N 4 HOH A 51 665 665 HOH HOH . 
N 4 HOH A 52 666 666 HOH HOH . 
N 4 HOH A 53 667 667 HOH HOH . 
N 4 HOH A 54 668 668 HOH HOH . 
N 4 HOH A 55 669 669 HOH HOH . 
N 4 HOH A 56 670 670 HOH HOH . 
N 4 HOH A 57 671 671 HOH HOH . 
N 4 HOH A 58 673 673 HOH HOH . 
N 4 HOH A 59 674 674 HOH HOH . 
N 4 HOH A 60 675 675 HOH HOH . 
N 4 HOH A 61 676 676 HOH HOH . 
N 4 HOH A 62 677 677 HOH HOH . 
O 4 HOH B 1 314 314 HOH HOH . 
O 4 HOH B 2 315 315 HOH HOH . 
O 4 HOH B 3 316 316 HOH HOH . 
O 4 HOH B 4 317 317 HOH HOH . 
O 4 HOH B 5 318 318 HOH HOH . 
O 4 HOH B 6 319 319 HOH HOH . 
O 4 HOH B 7 320 320 HOH HOH . 
O 4 HOH B 8 321 321 HOH HOH . 
O 4 HOH B 9 322 322 HOH HOH . 
O 4 HOH B 10 323 323 HOH HOH . 
O 4 HOH B 11 324 324 HOH HOH . 
O 4 HOH B 12 325 325 HOH HOH . 
O 4 HOH B 13 326 326 HOH HOH . 
O 4 HOH B 14 327 327 HOH HOH . 
O 4 HOH B 15 328 328 HOH HOH . 
O 4 HOH B 16 329 329 HOH HOH . 
O 4 HOH B 17 330 330 HOH HOH . 
O 4 HOH B 18 331 331 HOH HOH . 
O 4 HOH B 19 332 332 HOH HOH . 
O 4 HOH B 20 333 333 HOH HOH . 
O 4 HOH B 21 334 334 HOH HOH . 
O 4 HOH B 22 335 335 HOH HOH . 
O 4 HOH B 23 336 336 HOH HOH . 
O 4 HOH B 24 337 337 HOH HOH . 
O 4 HOH B 25 338 338 HOH HOH . 
O 4 HOH B 26 339 339 HOH HOH . 
O 4 HOH B 27 340 340 HOH HOH . 
O 4 HOH B 28 341 341 HOH HOH . 
O 4 HOH B 29 342 342 HOH HOH . 
O 4 HOH B 30 343 343 HOH HOH . 
O 4 HOH B 31 344 344 HOH HOH . 
O 4 HOH B 32 345 345 HOH HOH . 
O 4 HOH B 33 346 346 HOH HOH . 
O 4 HOH B 34 347 347 HOH HOH . 
O 4 HOH B 35 348 348 HOH HOH . 
O 4 HOH B 36 349 349 HOH HOH . 
O 4 HOH B 37 350 350 HOH HOH . 
O 4 HOH B 38 351 351 HOH HOH . 
O 4 HOH B 39 353 353 HOH HOH . 
O 4 HOH B 40 354 354 HOH HOH . 
O 4 HOH B 41 355 355 HOH HOH . 
O 4 HOH B 42 356 356 HOH HOH . 
O 4 HOH B 43 357 357 HOH HOH . 
O 4 HOH B 44 358 358 HOH HOH . 
O 4 HOH B 45 359 359 HOH HOH . 
O 4 HOH B 46 360 360 HOH HOH . 
O 4 HOH B 47 361 361 HOH HOH . 
O 4 HOH B 48 362 362 HOH HOH . 
O 4 HOH B 49 363 363 HOH HOH . 
O 4 HOH B 50 364 364 HOH HOH . 
O 4 HOH B 51 365 365 HOH HOH . 
O 4 HOH B 52 672 672 HOH HOH . 
P 4 HOH C 1 627 627 HOH HOH . 
P 4 HOH C 2 628 628 HOH HOH . 
P 4 HOH C 3 629 629 HOH HOH . 
P 4 HOH C 4 630 630 HOH HOH . 
P 4 HOH C 5 631 631 HOH HOH . 
P 4 HOH C 6 632 632 HOH HOH . 
P 4 HOH C 7 633 633 HOH HOH . 
P 4 HOH C 8 634 634 HOH HOH . 
P 4 HOH C 9 635 635 HOH HOH . 
P 4 HOH C 10 636 636 HOH HOH . 
P 4 HOH C 11 637 637 HOH HOH . 
P 4 HOH C 12 638 638 HOH HOH . 
P 4 HOH C 13 639 639 HOH HOH . 
P 4 HOH C 14 640 640 HOH HOH . 
P 4 HOH C 15 641 641 HOH HOH . 
P 4 HOH C 16 642 642 HOH HOH . 
P 4 HOH C 17 643 643 HOH HOH . 
P 4 HOH C 18 644 644 HOH HOH . 
P 4 HOH C 19 645 645 HOH HOH . 
P 4 HOH C 20 646 646 HOH HOH . 
P 4 HOH C 21 647 647 HOH HOH . 
P 4 HOH C 22 648 648 HOH HOH . 
P 4 HOH C 23 649 649 HOH HOH . 
P 4 HOH C 24 650 650 HOH HOH . 
P 4 HOH C 25 651 651 HOH HOH . 
P 4 HOH C 26 652 652 HOH HOH . 
P 4 HOH C 27 653 653 HOH HOH . 
P 4 HOH C 28 654 654 HOH HOH . 
P 4 HOH C 29 655 655 HOH HOH . 
P 4 HOH C 30 656 656 HOH HOH . 
Q 4 HOH D 1 618 618 HOH HOH . 
Q 4 HOH D 2 619 619 HOH HOH . 
Q 4 HOH D 3 620 620 HOH HOH . 
Q 4 HOH D 4 621 621 HOH HOH . 
Q 4 HOH D 5 622 622 HOH HOH . 
Q 4 HOH D 6 623 623 HOH HOH . 
Q 4 HOH D 7 624 624 HOH HOH . 
Q 4 HOH D 8 625 625 HOH HOH . 
Q 4 HOH D 9 626 626 HOH HOH . 
Q 4 HOH D 10 627 627 HOH HOH . 
Q 4 HOH D 11 628 628 HOH HOH . 
Q 4 HOH D 12 629 629 HOH HOH . 
Q 4 HOH D 13 630 630 HOH HOH . 
Q 4 HOH D 14 631 631 HOH HOH . 
Q 4 HOH D 15 632 632 HOH HOH . 
Q 4 HOH D 16 633 633 HOH HOH . 
Q 4 HOH D 17 634 634 HOH HOH . 
Q 4 HOH D 18 635 635 HOH HOH . 
Q 4 HOH D 19 636 636 HOH HOH . 
Q 4 HOH D 20 637 637 HOH HOH . 
Q 4 HOH D 21 638 638 HOH HOH . 
Q 4 HOH D 22 639 639 HOH HOH . 
Q 4 HOH D 23 640 640 HOH HOH . 
R 4 HOH E 1 629 629 HOH HOH . 
R 4 HOH E 2 630 630 HOH HOH . 
R 4 HOH E 3 631 631 HOH HOH . 
R 4 HOH E 4 632 632 HOH HOH . 
R 4 HOH E 5 633 633 HOH HOH . 
R 4 HOH E 6 634 634 HOH HOH . 
R 4 HOH E 7 635 635 HOH HOH . 
R 4 HOH E 8 636 636 HOH HOH . 
R 4 HOH E 9 637 637 HOH HOH . 
S 4 HOH F 1 314 314 HOH HOH . 
S 4 HOH F 2 315 315 HOH HOH . 
S 4 HOH F 3 316 316 HOH HOH . 
S 4 HOH F 4 317 317 HOH HOH . 
S 4 HOH F 5 318 318 HOH HOH . 
S 4 HOH F 6 319 319 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . I 3 66.908 -10.212 34.598 1 47.87 ? C1 BME 626 C 1 
HETATM 2 C C2 BME . . . I 3 66.27 -10.199 35.995 1 50.47 ? C2 BME 626 C 1 
HETATM 3 O O1 BME . . . I 3 68.038 -9.375 34.417 1 45.82 ? O1 BME 626 C 1 
HETATM 4 S S2 BME . . . I 3 67.373 -10.886 37.293 1 58.65 ? S2 BME 626 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#