data_2RDB # _model_server_result.job_id CIKch60HSYOyF5lb2Ic9dg _model_server_result.datetime_utc '2025-02-05 18:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":4974}' # _entry.id 2RDB # _exptl.entry_id 2RDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RDB _cell.length_a 182.42 _cell.length_b 182.42 _cell.length_c 67.962 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 45.308 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 G FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A OE2 GLU 134 A GLU 134 1_555 G FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A OE1 GLU 134 A GLU 134 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 G FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A OE1 GLU 197 A GLU 197 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 G FE FE . A FE 499 1_555 D O2 GOL . A GOL 4975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc9 G FE FE . A FE 499 1_555 J O HOH . A HOH 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 G FE FE . A FE 499 1_555 J O HOH . A HOH 5057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc11 H FE FE . A FE 500 1_555 D O2 GOL . A GOL 4975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc12 H FE FE . A FE 500 1_555 J O HOH . A HOH 5057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 278 n n O1 H1 P6G sing 279 n n C2 C3 P6G sing 280 n n C2 H21 P6G sing 281 n n C2 H22 P6G sing 282 n n C3 O4 P6G sing 283 n n C3 H31 P6G sing 284 n n C3 H32 P6G sing 285 n n O4 C5 P6G sing 286 n n C5 C6 P6G sing 287 n n C5 H51 P6G sing 288 n n C5 H52 P6G sing 289 n n C6 O7 P6G sing 290 n n C6 H61 P6G sing 291 n n C6 H62 P6G sing 292 n n O7 C8 P6G sing 293 n n C8 C9 P6G sing 294 n n C8 H81 P6G sing 295 n n C8 H82 P6G sing 296 n n C9 O10 P6G sing 297 n n C9 H91 P6G sing 298 n n C9 H92 P6G sing 299 n n O10 C11 P6G sing 300 n n C11 C12 P6G sing 301 n n C11 H111 P6G sing 302 n n C11 H112 P6G sing 303 n n C12 O13 P6G sing 304 n n C12 H121 P6G sing 305 n n C12 H122 P6G sing 306 n n O13 C14 P6G sing 307 n n C14 C15 P6G sing 308 n n C14 H141 P6G sing 309 n n C14 H142 P6G sing 310 n n C15 O16 P6G sing 311 n n C15 H151 P6G sing 312 n n C15 H152 P6G sing 313 n n O16 C17 P6G sing 314 n n C17 C18 P6G sing 315 n n C17 H171 P6G sing 316 n n C17 H172 P6G sing 317 n n C18 O19 P6G sing 318 n n C18 H181 P6G sing 319 n n C18 H182 P6G sing 320 n n O19 H19 P6G sing 321 n n # _atom_sites.entry_id 2RDB _atom_sites.fract_transf_matrix[1][1] 0.005482 _atom_sites.fract_transf_matrix[1][2] 0.003165 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 4975 4975 GOL GOL . E 4 GOL A 1 3287 3287 GOL GOL . F 5 P6G A 1 4974 4974 P6G P6G . G 6 FE A 1 499 493 FE FE . H 6 FE A 1 500 494 FE FE . I 7 MPO B 1 4401 4401 MPO MPO . J 8 HOH A 1 4976 4976 HOH HOH . J 8 HOH A 2 4977 4977 HOH HOH . J 8 HOH A 3 4978 4978 HOH HOH . J 8 HOH A 4 4979 4979 HOH HOH . J 8 HOH A 5 4980 4980 HOH HOH . J 8 HOH A 6 4981 4981 HOH HOH . J 8 HOH A 7 4982 4982 HOH HOH . J 8 HOH A 8 4983 4983 HOH HOH . J 8 HOH A 9 4984 4984 HOH HOH . J 8 HOH A 10 4985 4985 HOH HOH . J 8 HOH A 11 4986 4986 HOH HOH . J 8 HOH A 12 4987 4987 HOH HOH . J 8 HOH A 13 4988 4988 HOH HOH . J 8 HOH A 14 4989 4989 HOH HOH . J 8 HOH A 15 4990 4990 HOH HOH . J 8 HOH A 16 4991 4991 HOH HOH . J 8 HOH A 17 4992 4992 HOH HOH . J 8 HOH A 18 4993 4993 HOH HOH . J 8 HOH A 19 4994 4994 HOH HOH . J 8 HOH A 20 4995 4995 HOH HOH . J 8 HOH A 21 4996 4996 HOH HOH . J 8 HOH A 22 4997 4997 HOH HOH . J 8 HOH A 23 4998 4998 HOH HOH . J 8 HOH A 24 4999 4999 HOH HOH . J 8 HOH A 25 5000 5000 HOH HOH . J 8 HOH A 26 5001 5001 HOH HOH . J 8 HOH A 27 5002 5002 HOH HOH . J 8 HOH A 28 5003 5003 HOH HOH . J 8 HOH A 29 5004 5004 HOH HOH . J 8 HOH A 30 5005 5005 HOH HOH . J 8 HOH A 31 5006 5006 HOH HOH . J 8 HOH A 32 5007 5007 HOH HOH . J 8 HOH A 33 5008 5008 HOH HOH . J 8 HOH A 34 5009 5009 HOH HOH . J 8 HOH A 35 5010 5010 HOH HOH . J 8 HOH A 36 5011 5011 HOH HOH . J 8 HOH A 37 5012 5012 HOH HOH . J 8 HOH A 38 5013 5013 HOH HOH . J 8 HOH A 39 5014 5014 HOH HOH . J 8 HOH A 40 5015 5015 HOH HOH . J 8 HOH A 41 5016 5016 HOH HOH . J 8 HOH A 42 5017 5017 HOH HOH . J 8 HOH A 43 5018 5018 HOH HOH . J 8 HOH A 44 5019 5019 HOH HOH . J 8 HOH A 45 5020 5020 HOH HOH . J 8 HOH A 46 5021 5021 HOH HOH . J 8 HOH A 47 5022 5022 HOH HOH . J 8 HOH A 48 5023 5023 HOH HOH . J 8 HOH A 49 5024 5024 HOH HOH . J 8 HOH A 50 5025 5025 HOH HOH . J 8 HOH A 51 5026 5026 HOH HOH . J 8 HOH A 52 5027 5027 HOH HOH . J 8 HOH A 53 5028 5028 HOH HOH . J 8 HOH A 54 5029 5029 HOH HOH . J 8 HOH A 55 5030 5030 HOH HOH . J 8 HOH A 56 5031 5031 HOH HOH . J 8 HOH A 57 5032 5032 HOH HOH . J 8 HOH A 58 5033 5033 HOH HOH . J 8 HOH A 59 5034 5034 HOH HOH . J 8 HOH A 60 5035 5035 HOH HOH . J 8 HOH A 61 5036 5036 HOH HOH . J 8 HOH A 62 5037 5037 HOH HOH . J 8 HOH A 63 5038 5038 HOH HOH . J 8 HOH A 64 5039 5039 HOH HOH . J 8 HOH A 65 5040 5040 HOH HOH . J 8 HOH A 66 5041 5041 HOH HOH . J 8 HOH A 67 5042 5042 HOH HOH . J 8 HOH A 68 5043 5043 HOH HOH . J 8 HOH A 69 5044 5044 HOH HOH . J 8 HOH A 70 5045 5045 HOH HOH . J 8 HOH A 71 5046 5046 HOH HOH . J 8 HOH A 72 5047 5047 HOH HOH . J 8 HOH A 73 5048 5048 HOH HOH . J 8 HOH A 74 5049 5049 HOH HOH . J 8 HOH A 75 5050 5050 HOH HOH . J 8 HOH A 76 5051 5051 HOH HOH . J 8 HOH A 77 5052 5052 HOH HOH . J 8 HOH A 78 5053 5053 HOH HOH . J 8 HOH A 79 5054 5054 HOH HOH . J 8 HOH A 80 5055 5055 HOH HOH . J 8 HOH A 81 5056 5056 HOH HOH . J 8 HOH A 82 5057 5057 HOH HOH . K 8 HOH B 1 4402 4402 HOH HOH . K 8 HOH B 2 4403 4403 HOH HOH . K 8 HOH B 3 4404 4404 HOH HOH . K 8 HOH B 4 4405 4405 HOH HOH . K 8 HOH B 5 4406 4406 HOH HOH . K 8 HOH B 6 4407 4407 HOH HOH . K 8 HOH B 7 4408 4408 HOH HOH . K 8 HOH B 8 4409 4409 HOH HOH . K 8 HOH B 9 4410 4410 HOH HOH . K 8 HOH B 10 4411 4411 HOH HOH . K 8 HOH B 11 4412 4412 HOH HOH . K 8 HOH B 12 4413 4413 HOH HOH . K 8 HOH B 13 4414 4414 HOH HOH . K 8 HOH B 14 4415 4415 HOH HOH . K 8 HOH B 15 4416 4416 HOH HOH . K 8 HOH B 16 4417 4417 HOH HOH . K 8 HOH B 17 4418 4418 HOH HOH . K 8 HOH B 18 4419 4419 HOH HOH . K 8 HOH B 19 4420 4420 HOH HOH . K 8 HOH B 20 4421 4421 HOH HOH . K 8 HOH B 21 4422 4422 HOH HOH . K 8 HOH B 22 4423 4423 HOH HOH . K 8 HOH B 23 4424 4424 HOH HOH . K 8 HOH B 24 4425 4425 HOH HOH . K 8 HOH B 25 4426 4426 HOH HOH . K 8 HOH B 26 4427 4427 HOH HOH . K 8 HOH B 27 4428 4428 HOH HOH . K 8 HOH B 28 4429 4429 HOH HOH . K 8 HOH B 29 4430 4430 HOH HOH . K 8 HOH B 30 4431 4431 HOH HOH . K 8 HOH B 31 4432 4432 HOH HOH . K 8 HOH B 32 4433 4433 HOH HOH . K 8 HOH B 33 4434 4434 HOH HOH . K 8 HOH B 34 4435 4435 HOH HOH . K 8 HOH B 35 4436 4436 HOH HOH . K 8 HOH B 36 4437 4437 HOH HOH . K 8 HOH B 37 4438 4438 HOH HOH . K 8 HOH B 38 4439 4439 HOH HOH . K 8 HOH B 39 4440 4440 HOH HOH . K 8 HOH B 40 4441 4441 HOH HOH . K 8 HOH B 41 4442 4442 HOH HOH . K 8 HOH B 42 4443 4443 HOH HOH . K 8 HOH B 43 4444 4444 HOH HOH . K 8 HOH B 44 4445 4445 HOH HOH . K 8 HOH B 45 4446 4446 HOH HOH . K 8 HOH B 46 4447 4447 HOH HOH . K 8 HOH B 47 4448 4448 HOH HOH . K 8 HOH B 48 4449 4449 HOH HOH . K 8 HOH B 49 4450 4450 HOH HOH . K 8 HOH B 50 4451 4451 HOH HOH . K 8 HOH B 51 4452 4452 HOH HOH . K 8 HOH B 52 4453 4453 HOH HOH . K 8 HOH B 53 4454 4454 HOH HOH . K 8 HOH B 54 4455 4455 HOH HOH . K 8 HOH B 55 4456 4456 HOH HOH . K 8 HOH B 56 4457 4457 HOH HOH . K 8 HOH B 57 4458 4458 HOH HOH . K 8 HOH B 58 4459 4459 HOH HOH . K 8 HOH B 59 4460 4460 HOH HOH . K 8 HOH B 60 4461 4461 HOH HOH . K 8 HOH B 61 4462 4462 HOH HOH . K 8 HOH B 62 4463 4463 HOH HOH . K 8 HOH B 63 4464 4464 HOH HOH . K 8 HOH B 64 4465 4465 HOH HOH . K 8 HOH B 65 4466 4466 HOH HOH . K 8 HOH B 66 4467 4467 HOH HOH . K 8 HOH B 67 4468 4468 HOH HOH . K 8 HOH B 68 4469 4469 HOH HOH . K 8 HOH B 69 4470 4470 HOH HOH . K 8 HOH B 70 4471 4471 HOH HOH . K 8 HOH B 71 4472 4472 HOH HOH . K 8 HOH B 72 4473 4473 HOH HOH . L 8 HOH C 1 87 87 HOH HOH . L 8 HOH C 2 88 88 HOH HOH . L 8 HOH C 3 89 89 HOH HOH . L 8 HOH C 4 90 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . F 5 112.654 -36.243 46.116 1 56.45 ? O1 P6G 4974 A 1 HETATM 2 C C2 P6G . . . F 5 112.417 -36.108 47.548 1 63.78 ? C2 P6G 4974 A 1 HETATM 3 C C3 P6G . . . F 5 111.76 -34.784 48.065 1 63.91 ? C3 P6G 4974 A 1 HETATM 4 O O4 P6G . . . F 5 110.676 -34.938 48.984 1 63.46 ? O4 P6G 4974 A 1 HETATM 5 C C5 P6G . . . F 5 109.569 -35.673 48.419 1 67.03 ? C5 P6G 4974 A 1 HETATM 6 C C6 P6G . . . F 5 108.226 -35.296 49.066 1 71.96 ? C6 P6G 4974 A 1 HETATM 7 O O7 P6G . . . F 5 107.133 -35.745 48.211 1 76.53 ? O7 P6G 4974 A 1 HETATM 8 C C8 P6G . . . F 5 107.459 -35.763 46.801 1 72.96 ? C8 P6G 4974 A 1 HETATM 9 C C9 P6G . . . F 5 107.346 -34.338 46.204 1 61.41 ? C9 P6G 4974 A 1 HETATM 10 O O10 P6G . . . F 5 106.861 -34.478 44.872 1 63.24 ? O10 P6G 4974 A 1 HETATM 11 C C11 P6G . . . F 5 106.244 -35.729 44.483 1 56.57 ? C11 P6G 4974 A 1 HETATM 12 C C12 P6G . . . F 5 105.082 -35.689 43.46 1 50.53 ? C12 P6G 4974 A 1 HETATM 13 O O13 P6G . . . F 5 104.326 -36.934 43.671 1 50.72 ? O13 P6G 4974 A 1 HETATM 14 C C14 P6G . . . F 5 104.447 -37.886 42.504 1 57.76 ? C14 P6G 4974 A 1 HETATM 15 C C15 P6G . . . F 5 104.189 -37.228 41.064 1 51.69 ? C15 P6G 4974 A 1 HETATM 16 O O16 P6G . . . F 5 103.086 -37.685 40.175 1 47.05 ? O16 P6G 4974 A 1 HETATM 17 C C17 P6G . . . F 5 103.165 -37.162 38.843 1 52.28 ? C17 P6G 4974 A 1 HETATM 18 C C18 P6G . . . F 5 102.349 -37.799 37.695 1 50.49 ? C18 P6G 4974 A 1 HETATM 19 O O19 P6G . . . F 5 101.562 -38.727 37.823 1 51.13 ? O19 P6G 4974 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #