data_2RDB
#
_model_server_result.job_id            Y31OpOCoKqtObWj59ZcK3w 
_model_server_result.datetime_utc      '2025-02-05 18:56:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":499}' 
#
_entry.id    2RDB 
#
_exptl.entry_id    2RDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2RDB 
_cell.length_a            182.42 
_cell.length_b            182.42 
_cell.length_c            67.962 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 45.308 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 G FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc2 A OE2 GLU 134 A GLU 134 1_555 G FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc3 A OE1 GLU 134 A GLU 134 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 G FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc5 A OE1 GLU 197 A GLU 197 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 H FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc8 G FE FE . A FE 499 1_555 D O2 GOL . A GOL 4975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc9 G FE FE . A FE 499 1_555 J O HOH . A HOH 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc10 G FE FE . A FE 499 1_555 J O HOH . A HOH 5057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc11 H FE FE . A FE 500 1_555 D O2 GOL . A GOL 4975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc12 H FE FE . A FE 500 1_555 J O HOH . A HOH 5057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2RDB 
_atom_sites.fract_transf_matrix[1][1]    0.005482 
_atom_sites.fract_transf_matrix[1][2]    0.003165 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014714 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 4975 4975 GOL GOL . 
E 4 GOL A 1 3287 3287 GOL GOL . 
F 5 P6G A 1 4974 4974 P6G P6G . 
G 6 FE A 1 499 493 FE FE . 
H 6 FE A 1 500 494 FE FE . 
I 7 MPO B 1 4401 4401 MPO MPO . 
J 8 HOH A 1 4976 4976 HOH HOH . 
J 8 HOH A 2 4977 4977 HOH HOH . 
J 8 HOH A 3 4978 4978 HOH HOH . 
J 8 HOH A 4 4979 4979 HOH HOH . 
J 8 HOH A 5 4980 4980 HOH HOH . 
J 8 HOH A 6 4981 4981 HOH HOH . 
J 8 HOH A 7 4982 4982 HOH HOH . 
J 8 HOH A 8 4983 4983 HOH HOH . 
J 8 HOH A 9 4984 4984 HOH HOH . 
J 8 HOH A 10 4985 4985 HOH HOH . 
J 8 HOH A 11 4986 4986 HOH HOH . 
J 8 HOH A 12 4987 4987 HOH HOH . 
J 8 HOH A 13 4988 4988 HOH HOH . 
J 8 HOH A 14 4989 4989 HOH HOH . 
J 8 HOH A 15 4990 4990 HOH HOH . 
J 8 HOH A 16 4991 4991 HOH HOH . 
J 8 HOH A 17 4992 4992 HOH HOH . 
J 8 HOH A 18 4993 4993 HOH HOH . 
J 8 HOH A 19 4994 4994 HOH HOH . 
J 8 HOH A 20 4995 4995 HOH HOH . 
J 8 HOH A 21 4996 4996 HOH HOH . 
J 8 HOH A 22 4997 4997 HOH HOH . 
J 8 HOH A 23 4998 4998 HOH HOH . 
J 8 HOH A 24 4999 4999 HOH HOH . 
J 8 HOH A 25 5000 5000 HOH HOH . 
J 8 HOH A 26 5001 5001 HOH HOH . 
J 8 HOH A 27 5002 5002 HOH HOH . 
J 8 HOH A 28 5003 5003 HOH HOH . 
J 8 HOH A 29 5004 5004 HOH HOH . 
J 8 HOH A 30 5005 5005 HOH HOH . 
J 8 HOH A 31 5006 5006 HOH HOH . 
J 8 HOH A 32 5007 5007 HOH HOH . 
J 8 HOH A 33 5008 5008 HOH HOH . 
J 8 HOH A 34 5009 5009 HOH HOH . 
J 8 HOH A 35 5010 5010 HOH HOH . 
J 8 HOH A 36 5011 5011 HOH HOH . 
J 8 HOH A 37 5012 5012 HOH HOH . 
J 8 HOH A 38 5013 5013 HOH HOH . 
J 8 HOH A 39 5014 5014 HOH HOH . 
J 8 HOH A 40 5015 5015 HOH HOH . 
J 8 HOH A 41 5016 5016 HOH HOH . 
J 8 HOH A 42 5017 5017 HOH HOH . 
J 8 HOH A 43 5018 5018 HOH HOH . 
J 8 HOH A 44 5019 5019 HOH HOH . 
J 8 HOH A 45 5020 5020 HOH HOH . 
J 8 HOH A 46 5021 5021 HOH HOH . 
J 8 HOH A 47 5022 5022 HOH HOH . 
J 8 HOH A 48 5023 5023 HOH HOH . 
J 8 HOH A 49 5024 5024 HOH HOH . 
J 8 HOH A 50 5025 5025 HOH HOH . 
J 8 HOH A 51 5026 5026 HOH HOH . 
J 8 HOH A 52 5027 5027 HOH HOH . 
J 8 HOH A 53 5028 5028 HOH HOH . 
J 8 HOH A 54 5029 5029 HOH HOH . 
J 8 HOH A 55 5030 5030 HOH HOH . 
J 8 HOH A 56 5031 5031 HOH HOH . 
J 8 HOH A 57 5032 5032 HOH HOH . 
J 8 HOH A 58 5033 5033 HOH HOH . 
J 8 HOH A 59 5034 5034 HOH HOH . 
J 8 HOH A 60 5035 5035 HOH HOH . 
J 8 HOH A 61 5036 5036 HOH HOH . 
J 8 HOH A 62 5037 5037 HOH HOH . 
J 8 HOH A 63 5038 5038 HOH HOH . 
J 8 HOH A 64 5039 5039 HOH HOH . 
J 8 HOH A 65 5040 5040 HOH HOH . 
J 8 HOH A 66 5041 5041 HOH HOH . 
J 8 HOH A 67 5042 5042 HOH HOH . 
J 8 HOH A 68 5043 5043 HOH HOH . 
J 8 HOH A 69 5044 5044 HOH HOH . 
J 8 HOH A 70 5045 5045 HOH HOH . 
J 8 HOH A 71 5046 5046 HOH HOH . 
J 8 HOH A 72 5047 5047 HOH HOH . 
J 8 HOH A 73 5048 5048 HOH HOH . 
J 8 HOH A 74 5049 5049 HOH HOH . 
J 8 HOH A 75 5050 5050 HOH HOH . 
J 8 HOH A 76 5051 5051 HOH HOH . 
J 8 HOH A 77 5052 5052 HOH HOH . 
J 8 HOH A 78 5053 5053 HOH HOH . 
J 8 HOH A 79 5054 5054 HOH HOH . 
J 8 HOH A 80 5055 5055 HOH HOH . 
J 8 HOH A 81 5056 5056 HOH HOH . 
J 8 HOH A 82 5057 5057 HOH HOH . 
K 8 HOH B 1 4402 4402 HOH HOH . 
K 8 HOH B 2 4403 4403 HOH HOH . 
K 8 HOH B 3 4404 4404 HOH HOH . 
K 8 HOH B 4 4405 4405 HOH HOH . 
K 8 HOH B 5 4406 4406 HOH HOH . 
K 8 HOH B 6 4407 4407 HOH HOH . 
K 8 HOH B 7 4408 4408 HOH HOH . 
K 8 HOH B 8 4409 4409 HOH HOH . 
K 8 HOH B 9 4410 4410 HOH HOH . 
K 8 HOH B 10 4411 4411 HOH HOH . 
K 8 HOH B 11 4412 4412 HOH HOH . 
K 8 HOH B 12 4413 4413 HOH HOH . 
K 8 HOH B 13 4414 4414 HOH HOH . 
K 8 HOH B 14 4415 4415 HOH HOH . 
K 8 HOH B 15 4416 4416 HOH HOH . 
K 8 HOH B 16 4417 4417 HOH HOH . 
K 8 HOH B 17 4418 4418 HOH HOH . 
K 8 HOH B 18 4419 4419 HOH HOH . 
K 8 HOH B 19 4420 4420 HOH HOH . 
K 8 HOH B 20 4421 4421 HOH HOH . 
K 8 HOH B 21 4422 4422 HOH HOH . 
K 8 HOH B 22 4423 4423 HOH HOH . 
K 8 HOH B 23 4424 4424 HOH HOH . 
K 8 HOH B 24 4425 4425 HOH HOH . 
K 8 HOH B 25 4426 4426 HOH HOH . 
K 8 HOH B 26 4427 4427 HOH HOH . 
K 8 HOH B 27 4428 4428 HOH HOH . 
K 8 HOH B 28 4429 4429 HOH HOH . 
K 8 HOH B 29 4430 4430 HOH HOH . 
K 8 HOH B 30 4431 4431 HOH HOH . 
K 8 HOH B 31 4432 4432 HOH HOH . 
K 8 HOH B 32 4433 4433 HOH HOH . 
K 8 HOH B 33 4434 4434 HOH HOH . 
K 8 HOH B 34 4435 4435 HOH HOH . 
K 8 HOH B 35 4436 4436 HOH HOH . 
K 8 HOH B 36 4437 4437 HOH HOH . 
K 8 HOH B 37 4438 4438 HOH HOH . 
K 8 HOH B 38 4439 4439 HOH HOH . 
K 8 HOH B 39 4440 4440 HOH HOH . 
K 8 HOH B 40 4441 4441 HOH HOH . 
K 8 HOH B 41 4442 4442 HOH HOH . 
K 8 HOH B 42 4443 4443 HOH HOH . 
K 8 HOH B 43 4444 4444 HOH HOH . 
K 8 HOH B 44 4445 4445 HOH HOH . 
K 8 HOH B 45 4446 4446 HOH HOH . 
K 8 HOH B 46 4447 4447 HOH HOH . 
K 8 HOH B 47 4448 4448 HOH HOH . 
K 8 HOH B 48 4449 4449 HOH HOH . 
K 8 HOH B 49 4450 4450 HOH HOH . 
K 8 HOH B 50 4451 4451 HOH HOH . 
K 8 HOH B 51 4452 4452 HOH HOH . 
K 8 HOH B 52 4453 4453 HOH HOH . 
K 8 HOH B 53 4454 4454 HOH HOH . 
K 8 HOH B 54 4455 4455 HOH HOH . 
K 8 HOH B 55 4456 4456 HOH HOH . 
K 8 HOH B 56 4457 4457 HOH HOH . 
K 8 HOH B 57 4458 4458 HOH HOH . 
K 8 HOH B 58 4459 4459 HOH HOH . 
K 8 HOH B 59 4460 4460 HOH HOH . 
K 8 HOH B 60 4461 4461 HOH HOH . 
K 8 HOH B 61 4462 4462 HOH HOH . 
K 8 HOH B 62 4463 4463 HOH HOH . 
K 8 HOH B 63 4464 4464 HOH HOH . 
K 8 HOH B 64 4465 4465 HOH HOH . 
K 8 HOH B 65 4466 4466 HOH HOH . 
K 8 HOH B 66 4467 4467 HOH HOH . 
K 8 HOH B 67 4468 4468 HOH HOH . 
K 8 HOH B 68 4469 4469 HOH HOH . 
K 8 HOH B 69 4470 4470 HOH HOH . 
K 8 HOH B 70 4471 4471 HOH HOH . 
K 8 HOH B 71 4472 4472 HOH HOH . 
K 8 HOH B 72 4473 4473 HOH HOH . 
L 8 HOH C 1 87 87 HOH HOH . 
L 8 HOH C 2 88 88 HOH HOH . 
L 8 HOH C 3 89 89 HOH HOH . 
L 8 HOH C 4 90 86 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               111.641 
_atom_site.Cartn_y               -17.717 
_atom_site.Cartn_z               32.986 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           499 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#