data_2RDD # _model_server_result.job_id sB59gGCzTdbhHSbD4HaqBQ _model_server_result.datetime_utc '2024-11-28 18:10:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1109}' # _entry.id 2RDD # _exptl.entry_id 2RDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RDD _cell.length_a 145.097 _cell.length_b 145.097 _cell.length_c 511.644 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -72.5485 -125.657688 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 72.5485 -125.657688 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C16 H19 N3 O4 S' _chem_comp.formula_weight 349.405 _chem_comp.id AIC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN;D(-)-ALPHA-AMINOBENZYLPENICILLIN;6-[D(-)-ALPHA-AMINOPHENYLLACETAMIDO]PENICILLANIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 AIC doub 1 n y C8 C9 AIC sing 2 n y C8 HC8 AIC sing 3 n n C5 C4 AIC sing 4 n n C5 C7 AIC sing 5 n y C5 C11 AIC doub 6 n y C6 C1 AIC sing 7 n n C6 C12 AIC sing 8 n n C6 C16 AIC sing 9 n n C6 S1 AIC sing 10 n n N1 C3 AIC sing 11 n n N1 C14 AIC sing 12 n n N1 HN1 AIC sing 13 n n C2 C12 AIC sing 14 n n C2 O1 AIC doub 15 n n C2 O2 AIC sing 16 n n N3 C12 AIC sing 17 n n N3 C13 AIC sing 18 n n N3 C15 AIC sing 19 n n C4 C3 AIC sing 20 n n C4 N2 AIC sing 21 n n C4 HC4 AIC sing 22 n n C1 HC1 AIC sing 23 n n C1 HC2 AIC sing 24 n n C1 HC3 AIC sing 25 n n C3 O3 AIC doub 26 n n C7 HC7 AIC sing 27 n n C9 C10 AIC doub 28 n y C9 HC9 AIC sing 29 n n C10 C11 AIC sing 30 n y C10 HC01 AIC sing 31 n n C11 HC11 AIC sing 32 n n C12 HC21 AIC sing 33 n n C13 C14 AIC sing 34 n n C13 S1 AIC sing 35 n n C13 HC31 AIC sing 36 n n C14 C15 AIC sing 37 n n C14 HC41 AIC sing 38 n n C15 O4 AIC doub 39 n n C16 H161 AIC sing 40 n n C16 H162 AIC sing 41 n n C16 H163 AIC sing 42 n n N2 HN21 AIC sing 43 n n N2 HN22 AIC sing 44 n n O2 HO2 AIC sing 45 n n # _atom_sites.entry_id 2RDD _atom_sites.fract_transf_matrix[1][1] 0.006892 _atom_sites.fract_transf_matrix[1][2] 0.003979 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AIC A 1 1109 1109 AIC AIC . D 3 AIC A 1 1110 1110 AIC AIC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIC . . . C 3 20.342 -79.752 42.128 1 49.64 ? C8 AIC 1109 A 1 HETATM 2 C C5 AIC . . . C 3 18.407 -80.28 43.548 1 49.64 ? C5 AIC 1109 A 1 HETATM 3 C C6 AIC . . . C 3 11.817 -76.444 45.219 1 49.64 ? C6 AIC 1109 A 1 HETATM 4 N N1 AIC . . . C 3 15.434 -78.832 45.403 1 49.64 ? N1 AIC 1109 A 1 HETATM 5 C C2 AIC . . . C 3 11.018 -77.119 47.711 1 49.64 ? C2 AIC 1109 A 1 HETATM 6 N N3 AIC . . . C 3 13.393 -77.067 47.127 1 49.64 ? N3 AIC 1109 A 1 HETATM 7 C C4 AIC . . . C 3 16.924 -80.128 43.855 1 49.64 ? C4 AIC 1109 A 1 HETATM 8 C C1 AIC . . . C 3 11.45 -74.962 45.47 1 49.64 ? C1 AIC 1109 A 1 HETATM 9 C C3 AIC . . . C 3 16.699 -79.107 44.96 1 49.64 ? C3 AIC 1109 A 1 HETATM 10 C C7 AIC . . . C 3 18.963 -79.619 42.426 1 49.64 ? C7 AIC 1109 A 1 HETATM 11 C C9 AIC . . . C 3 21.173 -80.552 42.956 1 49.64 ? C9 AIC 1109 A 1 HETATM 12 C C10 AIC . . . C 3 20.62 -81.215 44.08 1 49.64 ? C10 AIC 1109 A 1 HETATM 13 C C11 AIC . . . C 3 19.241 -81.083 44.379 1 49.64 ? C11 AIC 1109 A 1 HETATM 14 C C12 AIC . . . C 3 12.041 -77.307 46.564 1 49.64 ? C12 AIC 1109 A 1 HETATM 15 C C13 AIC . . . C 3 14.374 -76.632 46.12 1 49.64 ? C13 AIC 1109 A 1 HETATM 16 C C14 AIC . . . C 3 15.234 -77.844 46.492 1 49.64 ? C14 AIC 1109 A 1 HETATM 17 C C15 AIC . . . C 3 14.176 -78.182 47.513 1 49.64 ? C15 AIC 1109 A 1 HETATM 18 C C16 AIC . . . C 3 10.751 -77.116 44.319 1 49.64 ? C16 AIC 1109 A 1 HETATM 19 N N2 AIC . . . C 3 16.377 -81.431 44.277 1 49.64 ? N2 AIC 1109 A 1 HETATM 20 O O1 AIC . . . C 3 9.815 -77.131 47.526 1 49.64 ? O1 AIC 1109 A 1 HETATM 21 O O2 AIC . . . C 3 11.479 -76.93 48.962 1 49.64 ? O2 AIC 1109 A 1 HETATM 22 O O3 AIC . . . C 3 17.656 -78.535 45.456 1 49.64 ? O3 AIC 1109 A 1 HETATM 23 O O4 AIC . . . C 3 14.032 -79.073 48.333 1 49.64 ? O4 AIC 1109 A 1 HETATM 24 S S1 AIC . . . C 3 13.508 -76.611 44.524 1 49.64 ? S1 AIC 1109 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #