data_2RDI # _model_server_result.job_id H14n3qN-TjnSbbFMYpSdZg _model_server_result.datetime_utc '2024-11-27 17:11:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":354}' # _entry.id 2RDI # _exptl.entry_id 2RDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.08 _cell.angle_gamma 90 _cell.entry_id 2RDI _cell.length_a 92.927 _cell.length_b 51.069 _cell.length_c 86.026 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2RDI _atom_sites.fract_transf_matrix[1][1] 0.010761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 353 1 PEG PEG . C 3 GOL A 1 354 1 GOL GOL . D 4 HOH A 1 355 2 HOH HOH . D 4 HOH A 2 356 3 HOH HOH . D 4 HOH A 3 357 4 HOH HOH . D 4 HOH A 4 358 5 HOH HOH . D 4 HOH A 5 359 6 HOH HOH . D 4 HOH A 6 360 7 HOH HOH . D 4 HOH A 7 361 8 HOH HOH . D 4 HOH A 8 362 9 HOH HOH . D 4 HOH A 9 363 10 HOH HOH . D 4 HOH A 10 364 11 HOH HOH . D 4 HOH A 11 365 12 HOH HOH . D 4 HOH A 12 366 13 HOH HOH . D 4 HOH A 13 367 14 HOH HOH . D 4 HOH A 14 368 15 HOH HOH . D 4 HOH A 15 369 16 HOH HOH . D 4 HOH A 16 370 17 HOH HOH . D 4 HOH A 17 371 18 HOH HOH . D 4 HOH A 18 372 19 HOH HOH . D 4 HOH A 19 373 20 HOH HOH . D 4 HOH A 20 374 21 HOH HOH . D 4 HOH A 21 375 22 HOH HOH . D 4 HOH A 22 376 23 HOH HOH . D 4 HOH A 23 377 24 HOH HOH . D 4 HOH A 24 378 25 HOH HOH . D 4 HOH A 25 379 26 HOH HOH . D 4 HOH A 26 380 27 HOH HOH . D 4 HOH A 27 381 28 HOH HOH . D 4 HOH A 28 382 29 HOH HOH . D 4 HOH A 29 383 30 HOH HOH . D 4 HOH A 30 384 31 HOH HOH . D 4 HOH A 31 385 32 HOH HOH . D 4 HOH A 32 386 33 HOH HOH . D 4 HOH A 33 387 34 HOH HOH . D 4 HOH A 34 388 35 HOH HOH . D 4 HOH A 35 389 36 HOH HOH . D 4 HOH A 36 390 37 HOH HOH . D 4 HOH A 37 391 38 HOH HOH . D 4 HOH A 38 392 39 HOH HOH . D 4 HOH A 39 393 40 HOH HOH . D 4 HOH A 40 394 41 HOH HOH . D 4 HOH A 41 395 42 HOH HOH . D 4 HOH A 42 396 43 HOH HOH . D 4 HOH A 43 397 44 HOH HOH . D 4 HOH A 44 398 45 HOH HOH . D 4 HOH A 45 399 46 HOH HOH . D 4 HOH A 46 400 48 HOH HOH . D 4 HOH A 47 401 49 HOH HOH . D 4 HOH A 48 402 50 HOH HOH . D 4 HOH A 49 403 51 HOH HOH . D 4 HOH A 50 404 52 HOH HOH . D 4 HOH A 51 405 53 HOH HOH . D 4 HOH A 52 406 54 HOH HOH . D 4 HOH A 53 407 55 HOH HOH . D 4 HOH A 54 408 56 HOH HOH . D 4 HOH A 55 409 57 HOH HOH . D 4 HOH A 56 410 58 HOH HOH . D 4 HOH A 57 411 59 HOH HOH . D 4 HOH A 58 412 60 HOH HOH . D 4 HOH A 59 413 61 HOH HOH . D 4 HOH A 60 414 62 HOH HOH . D 4 HOH A 61 415 63 HOH HOH . D 4 HOH A 62 416 64 HOH HOH . D 4 HOH A 63 417 65 HOH HOH . D 4 HOH A 64 418 66 HOH HOH . D 4 HOH A 65 419 67 HOH HOH . D 4 HOH A 66 420 68 HOH HOH . D 4 HOH A 67 421 69 HOH HOH . D 4 HOH A 68 422 71 HOH HOH . D 4 HOH A 69 423 72 HOH HOH . D 4 HOH A 70 424 73 HOH HOH . D 4 HOH A 71 425 74 HOH HOH . D 4 HOH A 72 426 75 HOH HOH . D 4 HOH A 73 427 76 HOH HOH . D 4 HOH A 74 428 77 HOH HOH . D 4 HOH A 75 429 78 HOH HOH . D 4 HOH A 76 430 79 HOH HOH . D 4 HOH A 77 431 80 HOH HOH . D 4 HOH A 78 432 81 HOH HOH . D 4 HOH A 79 433 82 HOH HOH . D 4 HOH A 80 434 83 HOH HOH . D 4 HOH A 81 435 85 HOH HOH . D 4 HOH A 82 436 87 HOH HOH . D 4 HOH A 83 437 88 HOH HOH . D 4 HOH A 84 438 89 HOH HOH . D 4 HOH A 85 439 90 HOH HOH . D 4 HOH A 86 440 91 HOH HOH . D 4 HOH A 87 441 92 HOH HOH . D 4 HOH A 88 442 93 HOH HOH . D 4 HOH A 89 443 94 HOH HOH . D 4 HOH A 90 444 95 HOH HOH . D 4 HOH A 91 445 96 HOH HOH . D 4 HOH A 92 446 97 HOH HOH . D 4 HOH A 93 447 98 HOH HOH . D 4 HOH A 94 448 99 HOH HOH . D 4 HOH A 95 449 100 HOH HOH . D 4 HOH A 96 450 101 HOH HOH . D 4 HOH A 97 451 102 HOH HOH . D 4 HOH A 98 452 103 HOH HOH . D 4 HOH A 99 453 104 HOH HOH . D 4 HOH A 100 454 105 HOH HOH . D 4 HOH A 101 455 106 HOH HOH . D 4 HOH A 102 456 107 HOH HOH . D 4 HOH A 103 457 108 HOH HOH . D 4 HOH A 104 458 109 HOH HOH . D 4 HOH A 105 459 110 HOH HOH . D 4 HOH A 106 460 111 HOH HOH . D 4 HOH A 107 461 112 HOH HOH . D 4 HOH A 108 462 113 HOH HOH . D 4 HOH A 109 463 114 HOH HOH . D 4 HOH A 110 464 115 HOH HOH . D 4 HOH A 111 465 116 HOH HOH . D 4 HOH A 112 466 117 HOH HOH . D 4 HOH A 113 467 118 HOH HOH . D 4 HOH A 114 468 119 HOH HOH . D 4 HOH A 115 469 120 HOH HOH . D 4 HOH A 116 470 121 HOH HOH . D 4 HOH A 117 471 122 HOH HOH . D 4 HOH A 118 472 123 HOH HOH . D 4 HOH A 119 473 124 HOH HOH . D 4 HOH A 120 474 125 HOH HOH . D 4 HOH A 121 475 126 HOH HOH . D 4 HOH A 122 476 127 HOH HOH . D 4 HOH A 123 477 128 HOH HOH . D 4 HOH A 124 478 129 HOH HOH . D 4 HOH A 125 479 130 HOH HOH . D 4 HOH A 126 480 131 HOH HOH . D 4 HOH A 127 481 132 HOH HOH . D 4 HOH A 128 482 133 HOH HOH . D 4 HOH A 129 483 134 HOH HOH . D 4 HOH A 130 484 135 HOH HOH . D 4 HOH A 131 485 136 HOH HOH . D 4 HOH A 132 486 137 HOH HOH . D 4 HOH A 133 487 138 HOH HOH . D 4 HOH A 134 488 139 HOH HOH . D 4 HOH A 135 489 140 HOH HOH . D 4 HOH A 136 490 141 HOH HOH . D 4 HOH A 137 491 142 HOH HOH . D 4 HOH A 138 492 143 HOH HOH . D 4 HOH A 139 493 144 HOH HOH . D 4 HOH A 140 494 145 HOH HOH . D 4 HOH A 141 495 146 HOH HOH . D 4 HOH A 142 496 147 HOH HOH . D 4 HOH A 143 497 148 HOH HOH . D 4 HOH A 144 498 149 HOH HOH . D 4 HOH A 145 499 150 HOH HOH . D 4 HOH A 146 500 151 HOH HOH . D 4 HOH A 147 501 152 HOH HOH . D 4 HOH A 148 502 153 HOH HOH . D 4 HOH A 149 503 154 HOH HOH . D 4 HOH A 150 504 155 HOH HOH . D 4 HOH A 151 505 156 HOH HOH . D 4 HOH A 152 506 157 HOH HOH . D 4 HOH A 153 507 158 HOH HOH . D 4 HOH A 154 508 159 HOH HOH . D 4 HOH A 155 509 160 HOH HOH . D 4 HOH A 156 510 161 HOH HOH . D 4 HOH A 157 511 162 HOH HOH . D 4 HOH A 158 512 163 HOH HOH . D 4 HOH A 159 513 164 HOH HOH . D 4 HOH A 160 514 165 HOH HOH . D 4 HOH A 161 515 166 HOH HOH . D 4 HOH A 162 516 167 HOH HOH . D 4 HOH A 163 517 168 HOH HOH . D 4 HOH A 164 518 169 HOH HOH . D 4 HOH A 165 519 170 HOH HOH . D 4 HOH A 166 520 171 HOH HOH . D 4 HOH A 167 521 172 HOH HOH . D 4 HOH A 168 522 173 HOH HOH . D 4 HOH A 169 523 174 HOH HOH . D 4 HOH A 170 524 175 HOH HOH . D 4 HOH A 171 525 176 HOH HOH . D 4 HOH A 172 526 177 HOH HOH . D 4 HOH A 173 527 178 HOH HOH . D 4 HOH A 174 528 179 HOH HOH . D 4 HOH A 175 529 180 HOH HOH . D 4 HOH A 176 530 181 HOH HOH . D 4 HOH A 177 531 182 HOH HOH . D 4 HOH A 178 532 183 HOH HOH . D 4 HOH A 179 533 184 HOH HOH . D 4 HOH A 180 534 185 HOH HOH . D 4 HOH A 181 535 186 HOH HOH . D 4 HOH A 182 536 187 HOH HOH . D 4 HOH A 183 537 188 HOH HOH . D 4 HOH A 184 538 189 HOH HOH . D 4 HOH A 185 539 190 HOH HOH . D 4 HOH A 186 540 191 HOH HOH . D 4 HOH A 187 541 192 HOH HOH . D 4 HOH A 188 542 193 HOH HOH . D 4 HOH A 189 543 194 HOH HOH . D 4 HOH A 190 544 195 HOH HOH . D 4 HOH A 191 545 196 HOH HOH . D 4 HOH A 192 546 197 HOH HOH . D 4 HOH A 193 547 198 HOH HOH . D 4 HOH A 194 548 199 HOH HOH . D 4 HOH A 195 549 200 HOH HOH . D 4 HOH A 196 550 201 HOH HOH . D 4 HOH A 197 551 202 HOH HOH . D 4 HOH A 198 552 203 HOH HOH . D 4 HOH A 199 553 204 HOH HOH . D 4 HOH A 200 554 205 HOH HOH . D 4 HOH A 201 555 206 HOH HOH . D 4 HOH A 202 556 207 HOH HOH . D 4 HOH A 203 557 208 HOH HOH . D 4 HOH A 204 558 209 HOH HOH . D 4 HOH A 205 559 210 HOH HOH . D 4 HOH A 206 560 211 HOH HOH . D 4 HOH A 207 561 212 HOH HOH . D 4 HOH A 208 562 213 HOH HOH . D 4 HOH A 209 563 214 HOH HOH . D 4 HOH A 210 564 215 HOH HOH . D 4 HOH A 211 565 216 HOH HOH . D 4 HOH A 212 566 217 HOH HOH . D 4 HOH A 213 567 218 HOH HOH . D 4 HOH A 214 568 219 HOH HOH . D 4 HOH A 215 569 220 HOH HOH . D 4 HOH A 216 570 221 HOH HOH . D 4 HOH A 217 571 222 HOH HOH . D 4 HOH A 218 572 223 HOH HOH . D 4 HOH A 219 573 224 HOH HOH . D 4 HOH A 220 574 225 HOH HOH . D 4 HOH A 221 575 226 HOH HOH . D 4 HOH A 222 576 227 HOH HOH . D 4 HOH A 223 577 228 HOH HOH . D 4 HOH A 224 578 229 HOH HOH . D 4 HOH A 225 579 230 HOH HOH . D 4 HOH A 226 580 231 HOH HOH . D 4 HOH A 227 581 232 HOH HOH . D 4 HOH A 228 582 233 HOH HOH . D 4 HOH A 229 583 234 HOH HOH . D 4 HOH A 230 584 235 HOH HOH . D 4 HOH A 231 585 236 HOH HOH . D 4 HOH A 232 586 237 HOH HOH . D 4 HOH A 233 587 238 HOH HOH . D 4 HOH A 234 588 239 HOH HOH . D 4 HOH A 235 589 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -21.09 6.549 8.09 1 59.23 ? C1 GOL 354 A 1 HETATM 2 O O1 GOL . . . C 3 -22.211 7.372 8.025 1 62.03 ? O1 GOL 354 A 1 HETATM 3 C C2 GOL . . . C 3 -20.651 6.392 6.669 1 60.87 ? C2 GOL 354 A 1 HETATM 4 O O2 GOL . . . C 3 -19.593 7.291 6.532 1 65.13 ? O2 GOL 354 A 1 HETATM 5 C C3 GOL . . . C 3 -20.094 5 6.525 1 62.53 ? C3 GOL 354 A 1 HETATM 6 O O3 GOL . . . C 3 -21.17 4.117 6.723 1 65.22 ? O3 GOL 354 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #