data_2RDP # _model_server_result.job_id GN7hIb8TtpNwOG8faxQLOQ _model_server_result.datetime_utc '2025-08-31 06:26:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":149}' # _entry.id 2RDP # _exptl.entry_id 2RDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RDP _cell.length_a 73.643 _cell.length_b 73.643 _cell.length_c 90.432 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 90.432 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 7 A ALA 4 1_555 A N MSE 8 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 8 A MSE 5 1_555 A N ASN 9 A ASN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C LYS 65 A LYS 62 1_555 A N MSE 66 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 66 A MSE 63 1_555 A N TYR 67 A TYR 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 A C ARG 79 A ARG 76 1_555 A N MSE 80 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 80 A MSE 77 1_555 A N GLU 81 A GLU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C GLU 146 A GLU 143 1_555 A N MSE 147 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 147 A MSE 144 1_555 A N THR 148 A THR 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O LEU 35 A LEU 32 1_555 B NA NA . A NA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc2 A O TYR 38 A TYR 35 1_555 B NA NA . A NA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc3 A O ILE 40 A ILE 37 1_555 B NA NA . A NA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 269 n n P O2 PO4 sing 270 n n P O3 PO4 sing 271 n n P O4 PO4 sing 272 n n # _atom_sites.entry_id 2RDP _atom_sites.fract_transf_matrix[1][1] 0.013579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 148 1 NA NA . C 3 PO4 A 1 149 1 PO4 PO4 . D 3 PO4 A 1 150 2 PO4 PO4 . E 4 BME A 1 151 1 BME BME . F 4 BME A 1 152 2 BME BME . G 5 HOH A 1 153 1 HOH HOH . G 5 HOH A 2 154 2 HOH HOH . G 5 HOH A 3 155 3 HOH HOH . G 5 HOH A 4 156 4 HOH HOH . G 5 HOH A 5 157 5 HOH HOH . G 5 HOH A 6 158 6 HOH HOH . G 5 HOH A 7 159 7 HOH HOH . G 5 HOH A 8 160 8 HOH HOH . G 5 HOH A 9 161 9 HOH HOH . G 5 HOH A 10 162 10 HOH HOH . G 5 HOH A 11 163 11 HOH HOH . G 5 HOH A 12 164 12 HOH HOH . G 5 HOH A 13 165 13 HOH HOH . G 5 HOH A 14 166 14 HOH HOH . G 5 HOH A 15 167 15 HOH HOH . G 5 HOH A 16 168 16 HOH HOH . G 5 HOH A 17 169 17 HOH HOH . G 5 HOH A 18 170 18 HOH HOH . G 5 HOH A 19 171 19 HOH HOH . G 5 HOH A 20 172 20 HOH HOH . G 5 HOH A 21 173 21 HOH HOH . G 5 HOH A 22 174 22 HOH HOH . G 5 HOH A 23 175 23 HOH HOH . G 5 HOH A 24 176 24 HOH HOH . G 5 HOH A 25 177 25 HOH HOH . G 5 HOH A 26 178 26 HOH HOH . G 5 HOH A 27 179 27 HOH HOH . G 5 HOH A 28 180 28 HOH HOH . G 5 HOH A 29 181 29 HOH HOH . G 5 HOH A 30 182 30 HOH HOH . G 5 HOH A 31 183 31 HOH HOH . G 5 HOH A 32 184 32 HOH HOH . G 5 HOH A 33 185 33 HOH HOH . G 5 HOH A 34 186 34 HOH HOH . G 5 HOH A 35 187 35 HOH HOH . G 5 HOH A 36 188 36 HOH HOH . G 5 HOH A 37 189 37 HOH HOH . G 5 HOH A 38 190 38 HOH HOH . G 5 HOH A 39 191 39 HOH HOH . G 5 HOH A 40 192 40 HOH HOH . G 5 HOH A 41 193 41 HOH HOH . G 5 HOH A 42 194 42 HOH HOH . G 5 HOH A 43 195 43 HOH HOH . G 5 HOH A 44 196 44 HOH HOH . G 5 HOH A 45 197 45 HOH HOH . G 5 HOH A 46 198 46 HOH HOH . G 5 HOH A 47 199 47 HOH HOH . G 5 HOH A 48 200 48 HOH HOH . G 5 HOH A 49 201 49 HOH HOH . G 5 HOH A 50 202 50 HOH HOH . G 5 HOH A 51 203 51 HOH HOH . G 5 HOH A 52 204 52 HOH HOH . G 5 HOH A 53 205 53 HOH HOH . G 5 HOH A 54 206 54 HOH HOH . G 5 HOH A 55 207 55 HOH HOH . G 5 HOH A 56 208 56 HOH HOH . G 5 HOH A 57 209 57 HOH HOH . G 5 HOH A 58 210 58 HOH HOH . G 5 HOH A 59 211 59 HOH HOH . G 5 HOH A 60 212 60 HOH HOH . G 5 HOH A 61 213 61 HOH HOH . G 5 HOH A 62 214 62 HOH HOH . G 5 HOH A 63 215 63 HOH HOH . G 5 HOH A 64 216 64 HOH HOH . G 5 HOH A 65 217 65 HOH HOH . G 5 HOH A 66 218 66 HOH HOH . G 5 HOH A 67 219 67 HOH HOH . G 5 HOH A 68 220 68 HOH HOH . G 5 HOH A 69 221 69 HOH HOH . G 5 HOH A 70 222 70 HOH HOH . G 5 HOH A 71 223 71 HOH HOH . G 5 HOH A 72 224 72 HOH HOH . G 5 HOH A 73 225 73 HOH HOH . G 5 HOH A 74 226 74 HOH HOH . G 5 HOH A 75 227 75 HOH HOH . G 5 HOH A 76 228 76 HOH HOH . G 5 HOH A 77 229 77 HOH HOH . G 5 HOH A 78 230 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 41.438 15.165 46.9 1 83.98 ? P PO4 149 A 1 HETATM 2 O O1 PO4 . . . C 3 42.366 15.256 48.089 1 85.51 ? O1 PO4 149 A 1 HETATM 3 O O2 PO4 . . . C 3 40.09 14.551 47.271 1 80.65 ? O2 PO4 149 A 1 HETATM 4 O O3 PO4 . . . C 3 42.076 14.36 45.771 1 84.92 ? O3 PO4 149 A 1 HETATM 5 O O4 PO4 . . . C 3 41.35 16.602 46.448 1 86.53 ? O4 PO4 149 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #