data_2RDT # _model_server_result.job_id s1h7d3B0ljN-yeP9XYjzWQ _model_server_result.datetime_utc '2024-11-24 12:03:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":365}' # _entry.id 2RDT # _exptl.entry_id 2RDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.459 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(dodecylthio)-1H-1,2,3-triazole-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RDT _cell.length_a 96.322 _cell.length_b 96.322 _cell.length_c 79.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H27 N3 O2 S' _chem_comp.formula_weight 313.459 _chem_comp.id 2RD _chem_comp.mon_nstd_flag . _chem_comp.name '5-(dodecylthio)-1H-1,2,3-triazole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-carboxy-5-dodecylsulfanyl-1,2,3-triazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD 2RD sing 1 n n CAD CAE 2RD sing 2 n n CAE CAF 2RD sing 3 n n CAF CAG 2RD sing 4 n n CAH CAG 2RD sing 5 n n CAH CAI 2RD sing 6 n n CAI CAJ 2RD sing 7 n n CAK CAJ 2RD sing 8 n n CAK CAL 2RD sing 9 n n CAM CAL 2RD sing 10 n n CAM CAN 2RD sing 11 n n CAN SAR 2RD sing 12 n n SAR CAU 2RD sing 13 n n OAC CAS 2RD doub 14 n n CAS CAT 2RD sing 15 n n CAS OAB 2RD sing 16 n n CAU CAT 2RD doub 17 n y CAU NAQ 2RD sing 18 n y CAT NAP 2RD sing 19 n y NAQ NAO 2RD sing 20 n y NAP NAO 2RD doub 21 n y CAA HAA1 2RD sing 22 n n CAA HAA2 2RD sing 23 n n CAA HAA3 2RD sing 24 n n CAD HAD1 2RD sing 25 n n CAD HAD2 2RD sing 26 n n CAE HAE1 2RD sing 27 n n CAE HAE2 2RD sing 28 n n CAF HAF1 2RD sing 29 n n CAF HAF2 2RD sing 30 n n CAG HAG1 2RD sing 31 n n CAG HAG2 2RD sing 32 n n CAH HAH1 2RD sing 33 n n CAH HAH2 2RD sing 34 n n CAI HAI1 2RD sing 35 n n CAI HAI2 2RD sing 36 n n CAJ HAJ1 2RD sing 37 n n CAJ HAJ2 2RD sing 38 n n CAK HAK1 2RD sing 39 n n CAK HAK2 2RD sing 40 n n CAL HAL1 2RD sing 41 n n CAL HAL2 2RD sing 42 n n CAM HAM1 2RD sing 43 n n CAM HAM2 2RD sing 44 n n CAN HAN1 2RD sing 45 n n CAN HAN2 2RD sing 46 n n NAQ HNAQ 2RD sing 47 n n OAB HOAB 2RD sing 48 n n # _atom_sites.entry_id 2RDT _atom_sites.fract_transf_matrix[1][1] 0.010382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 364 364 FMN FMN . C 3 2RD A 1 365 365 2RD 2RD . D 4 HOH A 1 366 366 HOH HOH . D 4 HOH A 2 367 367 HOH HOH . D 4 HOH A 3 368 368 HOH HOH . D 4 HOH A 4 369 369 HOH HOH . D 4 HOH A 5 370 370 HOH HOH . D 4 HOH A 6 371 371 HOH HOH . D 4 HOH A 7 372 372 HOH HOH . D 4 HOH A 8 373 373 HOH HOH . D 4 HOH A 9 374 374 HOH HOH . D 4 HOH A 10 375 375 HOH HOH . D 4 HOH A 11 376 376 HOH HOH . D 4 HOH A 12 377 377 HOH HOH . D 4 HOH A 13 378 378 HOH HOH . D 4 HOH A 14 379 379 HOH HOH . D 4 HOH A 15 380 380 HOH HOH . D 4 HOH A 16 381 381 HOH HOH . D 4 HOH A 17 382 382 HOH HOH . D 4 HOH A 18 383 383 HOH HOH . D 4 HOH A 19 384 384 HOH HOH . D 4 HOH A 20 385 385 HOH HOH . D 4 HOH A 21 386 386 HOH HOH . D 4 HOH A 22 387 387 HOH HOH . D 4 HOH A 23 388 388 HOH HOH . D 4 HOH A 24 389 389 HOH HOH . D 4 HOH A 25 390 390 HOH HOH . D 4 HOH A 26 391 391 HOH HOH . D 4 HOH A 27 392 392 HOH HOH . D 4 HOH A 28 393 393 HOH HOH . D 4 HOH A 29 394 394 HOH HOH . D 4 HOH A 30 395 395 HOH HOH . D 4 HOH A 31 396 396 HOH HOH . D 4 HOH A 32 397 397 HOH HOH . D 4 HOH A 33 398 398 HOH HOH . D 4 HOH A 34 399 399 HOH HOH . D 4 HOH A 35 400 400 HOH HOH . D 4 HOH A 36 401 401 HOH HOH . D 4 HOH A 37 402 402 HOH HOH . D 4 HOH A 38 403 403 HOH HOH . D 4 HOH A 39 404 404 HOH HOH . D 4 HOH A 40 405 405 HOH HOH . D 4 HOH A 41 406 406 HOH HOH . D 4 HOH A 42 407 407 HOH HOH . D 4 HOH A 43 408 408 HOH HOH . D 4 HOH A 44 409 409 HOH HOH . D 4 HOH A 45 410 410 HOH HOH . D 4 HOH A 46 411 411 HOH HOH . D 4 HOH A 47 412 412 HOH HOH . D 4 HOH A 48 413 413 HOH HOH . D 4 HOH A 49 414 414 HOH HOH . D 4 HOH A 50 415 415 HOH HOH . D 4 HOH A 51 416 416 HOH HOH . D 4 HOH A 52 417 417 HOH HOH . D 4 HOH A 53 418 418 HOH HOH . D 4 HOH A 54 419 419 HOH HOH . D 4 HOH A 55 420 420 HOH HOH . D 4 HOH A 56 421 421 HOH HOH . D 4 HOH A 57 422 422 HOH HOH . D 4 HOH A 58 423 423 HOH HOH . D 4 HOH A 59 424 424 HOH HOH . D 4 HOH A 60 425 425 HOH HOH . D 4 HOH A 61 426 426 HOH HOH . D 4 HOH A 62 427 427 HOH HOH . D 4 HOH A 63 428 428 HOH HOH . D 4 HOH A 64 429 429 HOH HOH . D 4 HOH A 65 430 430 HOH HOH . D 4 HOH A 66 431 431 HOH HOH . D 4 HOH A 67 432 432 HOH HOH . D 4 HOH A 68 433 433 HOH HOH . D 4 HOH A 69 434 434 HOH HOH . D 4 HOH A 70 435 435 HOH HOH . D 4 HOH A 71 436 436 HOH HOH . D 4 HOH A 72 437 437 HOH HOH . D 4 HOH A 73 438 438 HOH HOH . D 4 HOH A 74 439 439 HOH HOH . D 4 HOH A 75 440 440 HOH HOH . D 4 HOH A 76 441 441 HOH HOH . D 4 HOH A 77 442 442 HOH HOH . D 4 HOH A 78 443 443 HOH HOH . D 4 HOH A 79 444 444 HOH HOH . D 4 HOH A 80 445 445 HOH HOH . D 4 HOH A 81 446 446 HOH HOH . D 4 HOH A 82 447 447 HOH HOH . D 4 HOH A 83 448 448 HOH HOH . D 4 HOH A 84 449 449 HOH HOH . D 4 HOH A 85 450 450 HOH HOH . D 4 HOH A 86 451 451 HOH HOH . D 4 HOH A 87 452 452 HOH HOH . D 4 HOH A 88 453 453 HOH HOH . D 4 HOH A 89 454 454 HOH HOH . D 4 HOH A 90 455 455 HOH HOH . D 4 HOH A 91 456 456 HOH HOH . D 4 HOH A 92 457 457 HOH HOH . D 4 HOH A 93 458 458 HOH HOH . D 4 HOH A 94 459 459 HOH HOH . D 4 HOH A 95 460 460 HOH HOH . D 4 HOH A 96 461 461 HOH HOH . D 4 HOH A 97 462 462 HOH HOH . D 4 HOH A 98 463 463 HOH HOH . D 4 HOH A 99 464 464 HOH HOH . D 4 HOH A 100 465 465 HOH HOH . D 4 HOH A 101 466 466 HOH HOH . D 4 HOH A 102 467 467 HOH HOH . D 4 HOH A 103 468 468 HOH HOH . D 4 HOH A 104 469 469 HOH HOH . D 4 HOH A 105 470 470 HOH HOH . D 4 HOH A 106 471 471 HOH HOH . D 4 HOH A 107 472 472 HOH HOH . D 4 HOH A 108 473 473 HOH HOH . D 4 HOH A 109 474 474 HOH HOH . D 4 HOH A 110 475 475 HOH HOH . D 4 HOH A 111 476 476 HOH HOH . D 4 HOH A 112 477 477 HOH HOH . D 4 HOH A 113 478 478 HOH HOH . D 4 HOH A 114 479 479 HOH HOH . D 4 HOH A 115 480 480 HOH HOH . D 4 HOH A 116 481 481 HOH HOH . D 4 HOH A 117 482 482 HOH HOH . D 4 HOH A 118 483 483 HOH HOH . D 4 HOH A 119 484 484 HOH HOH . D 4 HOH A 120 485 485 HOH HOH . D 4 HOH A 121 486 486 HOH HOH . D 4 HOH A 122 487 487 HOH HOH . D 4 HOH A 123 488 488 HOH HOH . D 4 HOH A 124 489 489 HOH HOH . D 4 HOH A 125 490 490 HOH HOH . D 4 HOH A 126 491 491 HOH HOH . D 4 HOH A 127 492 492 HOH HOH . D 4 HOH A 128 493 493 HOH HOH . D 4 HOH A 129 494 494 HOH HOH . D 4 HOH A 130 495 495 HOH HOH . D 4 HOH A 131 496 496 HOH HOH . D 4 HOH A 132 497 497 HOH HOH . D 4 HOH A 133 498 498 HOH HOH . D 4 HOH A 134 499 499 HOH HOH . D 4 HOH A 135 500 500 HOH HOH . D 4 HOH A 136 501 501 HOH HOH . D 4 HOH A 137 502 502 HOH HOH . D 4 HOH A 138 503 503 HOH HOH . D 4 HOH A 139 504 504 HOH HOH . D 4 HOH A 140 505 505 HOH HOH . D 4 HOH A 141 506 506 HOH HOH . D 4 HOH A 142 507 507 HOH HOH . D 4 HOH A 143 508 508 HOH HOH . D 4 HOH A 144 509 509 HOH HOH . D 4 HOH A 145 510 510 HOH HOH . D 4 HOH A 146 511 511 HOH HOH . D 4 HOH A 147 512 512 HOH HOH . D 4 HOH A 148 513 513 HOH HOH . D 4 HOH A 149 514 514 HOH HOH . D 4 HOH A 150 515 515 HOH HOH . D 4 HOH A 151 516 516 HOH HOH . D 4 HOH A 152 517 517 HOH HOH . D 4 HOH A 153 518 518 HOH HOH . D 4 HOH A 154 519 519 HOH HOH . D 4 HOH A 155 520 520 HOH HOH . D 4 HOH A 156 521 521 HOH HOH . D 4 HOH A 157 522 522 HOH HOH . D 4 HOH A 158 523 523 HOH HOH . D 4 HOH A 159 524 524 HOH HOH . D 4 HOH A 160 525 525 HOH HOH . D 4 HOH A 161 526 526 HOH HOH . D 4 HOH A 162 527 527 HOH HOH . D 4 HOH A 163 528 528 HOH HOH . D 4 HOH A 164 529 529 HOH HOH . D 4 HOH A 165 530 530 HOH HOH . D 4 HOH A 166 531 531 HOH HOH . D 4 HOH A 167 532 532 HOH HOH . D 4 HOH A 168 533 533 HOH HOH . D 4 HOH A 169 534 534 HOH HOH . D 4 HOH A 170 535 535 HOH HOH . D 4 HOH A 171 536 536 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 2RD . . . C 3 41.087 11.661 6.365 1 60 ? CAA 2RD 365 A 1 HETATM 2 C CAD 2RD . . . C 3 41.746 10.372 6.878 1 60.35 ? CAD 2RD 365 A 1 HETATM 3 C CAE 2RD . . . C 3 40.72 9.421 7.517 1 59.79 ? CAE 2RD 365 A 1 HETATM 4 C CAF 2RD . . . C 3 40.715 9.523 9.056 1 59.14 ? CAF 2RD 365 A 1 HETATM 5 C CAG 2RD . . . C 3 40.359 8.188 9.738 1 57.72 ? CAG 2RD 365 A 1 HETATM 6 C CAH 2RD . . . C 3 38.87 7.825 9.616 1 55.73 ? CAH 2RD 365 A 1 HETATM 7 C CAI 2RD . . . C 3 38.683 6.309 9.775 1 55.06 ? CAI 2RD 365 A 1 HETATM 8 C CAJ 2RD . . . C 3 37.26 5.933 10.238 1 52.89 ? CAJ 2RD 365 A 1 HETATM 9 C CAK 2RD . . . C 3 36.961 4.446 9.966 1 50.09 ? CAK 2RD 365 A 1 HETATM 10 C CAL 2RD . . . C 3 36.364 3.752 11.196 1 45.66 ? CAL 2RD 365 A 1 HETATM 11 C CAM 2RD . . . C 3 34.832 3.794 11.175 1 40.56 ? CAM 2RD 365 A 1 HETATM 12 C CAN 2RD . . . C 3 34.273 4.66 12.306 1 36.08 ? CAN 2RD 365 A 1 HETATM 13 S SAR 2RD . . . C 3 32.446 4.635 12.326 1 30.16 ? SAR 2RD 365 A 1 HETATM 14 C CAU 2RD . . . C 3 32.086 5.114 14.011 1 29.7 ? CAU 2RD 365 A 1 HETATM 15 N NAQ 2RD . . . C 3 32.955 5.291 15.018 1 26.18 ? NAQ 2RD 365 A 1 HETATM 16 N NAO 2RD . . . C 3 32.281 5.627 16.011 1 26.45 ? NAO 2RD 365 A 1 HETATM 17 N NAP 2RD . . . C 3 31.047 5.685 15.812 1 27.22 ? NAP 2RD 365 A 1 HETATM 18 C CAT 2RD . . . C 3 30.842 5.374 14.545 1 25.52 ? CAT 2RD 365 A 1 HETATM 19 C CAS 2RD . . . C 3 29.507 5.285 13.883 1 23.51 ? CAS 2RD 365 A 1 HETATM 20 O OAC 2RD . . . C 3 29.443 4.971 12.667 1 21.56 ? OAC 2RD 365 A 1 HETATM 21 O OAB 2RD . . . C 3 28.523 5.47 14.628 1 24.03 ? OAB 2RD 365 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #