data_2RDU # _model_server_result.job_id 7CfPHmqyh2Gc9VBK2SR_sA _model_server_result.datetime_utc '2024-11-24 09:30:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":372}' # _entry.id 2RDU # _exptl.entry_id 2RDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 74.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RDU _cell.length_a 97.386 _cell.length_b 97.386 _cell.length_c 80.468 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H2 O3' _chem_comp.formula_weight 74.035 _chem_comp.id GLV _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYOXALATE;GLYOXYLATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLV doub 174 n n C1 C2 GLV sing 175 n n C1 H1 GLV sing 176 n n C2 O2 GLV doub 177 n n C2 O3 GLV sing 178 n n O3 HO3 GLV sing 179 n n # _atom_sites.entry_id 2RDU _atom_sites.fract_transf_matrix[1][1] 0.010268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 371 1 FMN FMN . C 3 GLV A 1 372 2 GLV GLV . D 4 HOH A 1 373 1 HOH HOH . D 4 HOH A 2 374 2 HOH HOH . D 4 HOH A 3 375 3 HOH HOH . D 4 HOH A 4 376 4 HOH HOH . D 4 HOH A 5 377 5 HOH HOH . D 4 HOH A 6 378 6 HOH HOH . D 4 HOH A 7 379 7 HOH HOH . D 4 HOH A 8 380 8 HOH HOH . D 4 HOH A 9 381 9 HOH HOH . D 4 HOH A 10 382 10 HOH HOH . D 4 HOH A 11 383 11 HOH HOH . D 4 HOH A 12 384 12 HOH HOH . D 4 HOH A 13 385 13 HOH HOH . D 4 HOH A 14 386 14 HOH HOH . D 4 HOH A 15 387 15 HOH HOH . D 4 HOH A 16 388 16 HOH HOH . D 4 HOH A 17 389 17 HOH HOH . D 4 HOH A 18 390 18 HOH HOH . D 4 HOH A 19 391 19 HOH HOH . D 4 HOH A 20 392 20 HOH HOH . D 4 HOH A 21 393 21 HOH HOH . D 4 HOH A 22 394 22 HOH HOH . D 4 HOH A 23 395 23 HOH HOH . D 4 HOH A 24 396 24 HOH HOH . D 4 HOH A 25 397 25 HOH HOH . D 4 HOH A 26 398 26 HOH HOH . D 4 HOH A 27 399 27 HOH HOH . D 4 HOH A 28 400 28 HOH HOH . D 4 HOH A 29 401 29 HOH HOH . D 4 HOH A 30 402 30 HOH HOH . D 4 HOH A 31 403 31 HOH HOH . D 4 HOH A 32 404 32 HOH HOH . D 4 HOH A 33 405 33 HOH HOH . D 4 HOH A 34 406 34 HOH HOH . D 4 HOH A 35 407 35 HOH HOH . D 4 HOH A 36 408 36 HOH HOH . D 4 HOH A 37 409 37 HOH HOH . D 4 HOH A 38 410 38 HOH HOH . D 4 HOH A 39 411 39 HOH HOH . D 4 HOH A 40 412 40 HOH HOH . D 4 HOH A 41 413 41 HOH HOH . D 4 HOH A 42 414 42 HOH HOH . D 4 HOH A 43 415 43 HOH HOH . D 4 HOH A 44 416 44 HOH HOH . D 4 HOH A 45 417 45 HOH HOH . D 4 HOH A 46 418 46 HOH HOH . D 4 HOH A 47 419 47 HOH HOH . D 4 HOH A 48 420 48 HOH HOH . D 4 HOH A 49 421 49 HOH HOH . D 4 HOH A 50 422 50 HOH HOH . D 4 HOH A 51 423 51 HOH HOH . D 4 HOH A 52 424 52 HOH HOH . D 4 HOH A 53 425 53 HOH HOH . D 4 HOH A 54 426 54 HOH HOH . D 4 HOH A 55 427 55 HOH HOH . D 4 HOH A 56 428 56 HOH HOH . D 4 HOH A 57 429 57 HOH HOH . D 4 HOH A 58 430 58 HOH HOH . D 4 HOH A 59 431 59 HOH HOH . D 4 HOH A 60 432 60 HOH HOH . D 4 HOH A 61 433 61 HOH HOH . D 4 HOH A 62 434 62 HOH HOH . D 4 HOH A 63 435 63 HOH HOH . D 4 HOH A 64 436 64 HOH HOH . D 4 HOH A 65 437 65 HOH HOH . D 4 HOH A 66 438 66 HOH HOH . D 4 HOH A 67 439 67 HOH HOH . D 4 HOH A 68 440 68 HOH HOH . D 4 HOH A 69 441 69 HOH HOH . D 4 HOH A 70 442 70 HOH HOH . D 4 HOH A 71 443 71 HOH HOH . D 4 HOH A 72 444 72 HOH HOH . D 4 HOH A 73 445 73 HOH HOH . D 4 HOH A 74 446 74 HOH HOH . D 4 HOH A 75 447 75 HOH HOH . D 4 HOH A 76 448 76 HOH HOH . D 4 HOH A 77 449 77 HOH HOH . D 4 HOH A 78 450 78 HOH HOH . D 4 HOH A 79 451 79 HOH HOH . D 4 HOH A 80 452 80 HOH HOH . D 4 HOH A 81 453 81 HOH HOH . D 4 HOH A 82 454 82 HOH HOH . D 4 HOH A 83 455 83 HOH HOH . D 4 HOH A 84 456 84 HOH HOH . D 4 HOH A 85 457 85 HOH HOH . D 4 HOH A 86 458 86 HOH HOH . D 4 HOH A 87 459 87 HOH HOH . D 4 HOH A 88 460 88 HOH HOH . D 4 HOH A 89 461 89 HOH HOH . D 4 HOH A 90 462 90 HOH HOH . D 4 HOH A 91 463 91 HOH HOH . D 4 HOH A 92 464 92 HOH HOH . D 4 HOH A 93 465 93 HOH HOH . D 4 HOH A 94 466 94 HOH HOH . D 4 HOH A 95 467 95 HOH HOH . D 4 HOH A 96 468 96 HOH HOH . D 4 HOH A 97 469 97 HOH HOH . D 4 HOH A 98 470 98 HOH HOH . D 4 HOH A 99 471 99 HOH HOH . D 4 HOH A 100 472 100 HOH HOH . D 4 HOH A 101 473 101 HOH HOH . D 4 HOH A 102 474 102 HOH HOH . D 4 HOH A 103 475 103 HOH HOH . D 4 HOH A 104 476 104 HOH HOH . D 4 HOH A 105 477 105 HOH HOH . D 4 HOH A 106 478 106 HOH HOH . D 4 HOH A 107 479 107 HOH HOH . D 4 HOH A 108 480 108 HOH HOH . D 4 HOH A 109 481 109 HOH HOH . D 4 HOH A 110 482 110 HOH HOH . D 4 HOH A 111 483 111 HOH HOH . D 4 HOH A 112 484 112 HOH HOH . D 4 HOH A 113 485 113 HOH HOH . D 4 HOH A 114 486 114 HOH HOH . D 4 HOH A 115 487 115 HOH HOH . D 4 HOH A 116 488 116 HOH HOH . D 4 HOH A 117 489 117 HOH HOH . D 4 HOH A 118 490 118 HOH HOH . D 4 HOH A 119 491 119 HOH HOH . D 4 HOH A 120 492 120 HOH HOH . D 4 HOH A 121 493 121 HOH HOH . D 4 HOH A 122 494 122 HOH HOH . D 4 HOH A 123 495 123 HOH HOH . D 4 HOH A 124 496 124 HOH HOH . D 4 HOH A 125 497 125 HOH HOH . D 4 HOH A 126 498 126 HOH HOH . D 4 HOH A 127 499 127 HOH HOH . D 4 HOH A 128 500 128 HOH HOH . D 4 HOH A 129 501 129 HOH HOH . D 4 HOH A 130 502 130 HOH HOH . D 4 HOH A 131 503 131 HOH HOH . D 4 HOH A 132 504 132 HOH HOH . D 4 HOH A 133 505 133 HOH HOH . D 4 HOH A 134 506 134 HOH HOH . D 4 HOH A 135 507 135 HOH HOH . D 4 HOH A 136 508 136 HOH HOH . D 4 HOH A 137 509 137 HOH HOH . D 4 HOH A 138 510 138 HOH HOH . D 4 HOH A 139 511 139 HOH HOH . D 4 HOH A 140 512 140 HOH HOH . D 4 HOH A 141 513 141 HOH HOH . D 4 HOH A 142 514 142 HOH HOH . D 4 HOH A 143 515 143 HOH HOH . D 4 HOH A 144 516 144 HOH HOH . D 4 HOH A 145 517 145 HOH HOH . D 4 HOH A 146 518 146 HOH HOH . D 4 HOH A 147 519 147 HOH HOH . D 4 HOH A 148 520 148 HOH HOH . D 4 HOH A 149 521 149 HOH HOH . D 4 HOH A 150 522 150 HOH HOH . D 4 HOH A 151 523 151 HOH HOH . D 4 HOH A 152 524 152 HOH HOH . D 4 HOH A 153 525 153 HOH HOH . D 4 HOH A 154 526 154 HOH HOH . D 4 HOH A 155 527 155 HOH HOH . D 4 HOH A 156 528 156 HOH HOH . D 4 HOH A 157 529 157 HOH HOH . D 4 HOH A 158 530 158 HOH HOH . D 4 HOH A 159 531 159 HOH HOH . D 4 HOH A 160 532 160 HOH HOH . D 4 HOH A 161 533 161 HOH HOH . D 4 HOH A 162 534 162 HOH HOH . D 4 HOH A 163 535 163 HOH HOH . D 4 HOH A 164 536 165 HOH HOH . D 4 HOH A 165 537 166 HOH HOH . D 4 HOH A 166 538 167 HOH HOH . D 4 HOH A 167 539 168 HOH HOH . D 4 HOH A 168 540 169 HOH HOH . D 4 HOH A 169 541 170 HOH HOH . D 4 HOH A 170 542 171 HOH HOH . D 4 HOH A 171 543 172 HOH HOH . D 4 HOH A 172 544 173 HOH HOH . D 4 HOH A 173 545 174 HOH HOH . D 4 HOH A 174 546 175 HOH HOH . D 4 HOH A 175 547 176 HOH HOH . D 4 HOH A 176 548 177 HOH HOH . D 4 HOH A 177 549 178 HOH HOH . D 4 HOH A 178 550 179 HOH HOH . D 4 HOH A 179 551 180 HOH HOH . D 4 HOH A 180 552 181 HOH HOH . D 4 HOH A 181 553 182 HOH HOH . D 4 HOH A 182 554 183 HOH HOH . D 4 HOH A 183 555 184 HOH HOH . D 4 HOH A 184 556 185 HOH HOH . D 4 HOH A 185 557 186 HOH HOH . D 4 HOH A 186 558 187 HOH HOH . D 4 HOH A 187 559 188 HOH HOH . D 4 HOH A 188 560 189 HOH HOH . D 4 HOH A 189 561 190 HOH HOH . D 4 HOH A 190 562 191 HOH HOH . D 4 HOH A 191 563 192 HOH HOH . D 4 HOH A 192 564 193 HOH HOH . D 4 HOH A 193 565 195 HOH HOH . D 4 HOH A 194 566 196 HOH HOH . D 4 HOH A 195 567 197 HOH HOH . D 4 HOH A 196 568 198 HOH HOH . D 4 HOH A 197 569 199 HOH HOH . D 4 HOH A 198 570 200 HOH HOH . D 4 HOH A 199 571 201 HOH HOH . D 4 HOH A 200 572 202 HOH HOH . D 4 HOH A 201 573 203 HOH HOH . D 4 HOH A 202 574 204 HOH HOH . D 4 HOH A 203 575 205 HOH HOH . D 4 HOH A 204 576 206 HOH HOH . D 4 HOH A 205 577 207 HOH HOH . D 4 HOH A 206 578 209 HOH HOH . D 4 HOH A 207 579 210 HOH HOH . D 4 HOH A 208 580 211 HOH HOH . D 4 HOH A 209 581 212 HOH HOH . D 4 HOH A 210 582 213 HOH HOH . D 4 HOH A 211 583 214 HOH HOH . D 4 HOH A 212 584 215 HOH HOH . D 4 HOH A 213 585 216 HOH HOH . D 4 HOH A 214 586 217 HOH HOH . D 4 HOH A 215 587 218 HOH HOH . D 4 HOH A 216 588 219 HOH HOH . D 4 HOH A 217 589 220 HOH HOH . D 4 HOH A 218 590 221 HOH HOH . D 4 HOH A 219 591 222 HOH HOH . D 4 HOH A 220 592 223 HOH HOH . D 4 HOH A 221 593 224 HOH HOH . D 4 HOH A 222 594 225 HOH HOH . D 4 HOH A 223 595 226 HOH HOH . D 4 HOH A 224 596 227 HOH HOH . D 4 HOH A 225 597 228 HOH HOH . D 4 HOH A 226 598 229 HOH HOH . D 4 HOH A 227 599 231 HOH HOH . D 4 HOH A 228 600 232 HOH HOH . D 4 HOH A 229 601 233 HOH HOH . D 4 HOH A 230 602 234 HOH HOH . D 4 HOH A 231 603 237 HOH HOH . D 4 HOH A 232 604 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLV . . . C 3 31.007 -5.77 -13.809 1 29.09 ? C1 GLV 372 A 1 HETATM 2 O O1 GLV . . . C 3 30.955 -5.896 -15.027 1 27.18 ? O1 GLV 372 A 1 HETATM 3 C C2 GLV . . . C 3 29.707 -5.444 -13.116 1 29.18 ? C2 GLV 372 A 1 HETATM 4 O O2 GLV . . . C 3 29.752 -5.274 -11.888 1 31.25 ? O2 GLV 372 A 1 HETATM 5 O O3 GLV . . . C 3 28.684 -5.334 -13.835 1 31.9 ? O3 GLV 372 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #