data_2RDW # _model_server_result.job_id 0IlurfkpIyiYAMkJyxtU-g _model_server_result.datetime_utc '2024-11-24 08:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":372}' # _entry.id 2RDW # _exptl.entry_id 2RDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RDW _cell.length_a 143.649 _cell.length_b 143.649 _cell.length_c 110.461 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2RDW _atom_sites.fract_transf_matrix[1][1] 0.006961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 371 2 SO4 SO4 . C 3 FMN A 1 372 1 FMN FMN . D 4 HOH A 1 373 1 HOH HOH . D 4 HOH A 2 374 2 HOH HOH . D 4 HOH A 3 375 3 HOH HOH . D 4 HOH A 4 376 4 HOH HOH . D 4 HOH A 5 377 5 HOH HOH . D 4 HOH A 6 378 6 HOH HOH . D 4 HOH A 7 379 7 HOH HOH . D 4 HOH A 8 380 8 HOH HOH . D 4 HOH A 9 381 9 HOH HOH . D 4 HOH A 10 382 10 HOH HOH . D 4 HOH A 11 383 11 HOH HOH . D 4 HOH A 12 384 12 HOH HOH . D 4 HOH A 13 385 13 HOH HOH . D 4 HOH A 14 386 14 HOH HOH . D 4 HOH A 15 387 15 HOH HOH . D 4 HOH A 16 388 16 HOH HOH . D 4 HOH A 17 389 17 HOH HOH . D 4 HOH A 18 390 18 HOH HOH . D 4 HOH A 19 391 19 HOH HOH . D 4 HOH A 20 392 20 HOH HOH . D 4 HOH A 21 393 21 HOH HOH . D 4 HOH A 22 394 22 HOH HOH . D 4 HOH A 23 395 23 HOH HOH . D 4 HOH A 24 396 24 HOH HOH . D 4 HOH A 25 397 25 HOH HOH . D 4 HOH A 26 398 26 HOH HOH . D 4 HOH A 27 399 27 HOH HOH . D 4 HOH A 28 400 28 HOH HOH . D 4 HOH A 29 401 29 HOH HOH . D 4 HOH A 30 402 30 HOH HOH . D 4 HOH A 31 403 31 HOH HOH . D 4 HOH A 32 404 32 HOH HOH . D 4 HOH A 33 405 33 HOH HOH . D 4 HOH A 34 406 34 HOH HOH . D 4 HOH A 35 407 35 HOH HOH . D 4 HOH A 36 408 36 HOH HOH . D 4 HOH A 37 409 37 HOH HOH . D 4 HOH A 38 410 38 HOH HOH . D 4 HOH A 39 411 39 HOH HOH . D 4 HOH A 40 412 40 HOH HOH . D 4 HOH A 41 413 41 HOH HOH . D 4 HOH A 42 414 42 HOH HOH . D 4 HOH A 43 415 43 HOH HOH . D 4 HOH A 44 416 44 HOH HOH . D 4 HOH A 45 417 45 HOH HOH . D 4 HOH A 46 418 46 HOH HOH . D 4 HOH A 47 419 47 HOH HOH . D 4 HOH A 48 420 48 HOH HOH . D 4 HOH A 49 421 49 HOH HOH . D 4 HOH A 50 422 50 HOH HOH . D 4 HOH A 51 423 51 HOH HOH . D 4 HOH A 52 424 52 HOH HOH . D 4 HOH A 53 425 53 HOH HOH . D 4 HOH A 54 426 54 HOH HOH . D 4 HOH A 55 427 55 HOH HOH . D 4 HOH A 56 428 56 HOH HOH . D 4 HOH A 57 429 57 HOH HOH . D 4 HOH A 58 430 58 HOH HOH . D 4 HOH A 59 431 59 HOH HOH . D 4 HOH A 60 432 60 HOH HOH . D 4 HOH A 61 433 61 HOH HOH . D 4 HOH A 62 434 62 HOH HOH . D 4 HOH A 63 435 63 HOH HOH . D 4 HOH A 64 436 64 HOH HOH . D 4 HOH A 65 437 65 HOH HOH . D 4 HOH A 66 438 66 HOH HOH . D 4 HOH A 67 439 67 HOH HOH . D 4 HOH A 68 440 68 HOH HOH . D 4 HOH A 69 441 69 HOH HOH . D 4 HOH A 70 442 70 HOH HOH . D 4 HOH A 71 443 71 HOH HOH . D 4 HOH A 72 444 72 HOH HOH . D 4 HOH A 73 445 73 HOH HOH . D 4 HOH A 74 446 74 HOH HOH . D 4 HOH A 75 447 75 HOH HOH . D 4 HOH A 76 448 76 HOH HOH . D 4 HOH A 77 449 77 HOH HOH . D 4 HOH A 78 450 78 HOH HOH . D 4 HOH A 79 451 79 HOH HOH . D 4 HOH A 80 452 80 HOH HOH . D 4 HOH A 81 453 81 HOH HOH . D 4 HOH A 82 454 82 HOH HOH . D 4 HOH A 83 455 83 HOH HOH . D 4 HOH A 84 456 84 HOH HOH . D 4 HOH A 85 457 85 HOH HOH . D 4 HOH A 86 458 86 HOH HOH . D 4 HOH A 87 459 87 HOH HOH . D 4 HOH A 88 460 88 HOH HOH . D 4 HOH A 89 461 89 HOH HOH . D 4 HOH A 90 462 90 HOH HOH . D 4 HOH A 91 463 91 HOH HOH . D 4 HOH A 92 464 92 HOH HOH . D 4 HOH A 93 465 93 HOH HOH . D 4 HOH A 94 466 94 HOH HOH . D 4 HOH A 95 467 95 HOH HOH . D 4 HOH A 96 468 96 HOH HOH . D 4 HOH A 97 469 97 HOH HOH . D 4 HOH A 98 470 98 HOH HOH . D 4 HOH A 99 471 99 HOH HOH . D 4 HOH A 100 472 100 HOH HOH . D 4 HOH A 101 473 101 HOH HOH . D 4 HOH A 102 474 102 HOH HOH . D 4 HOH A 103 475 103 HOH HOH . D 4 HOH A 104 476 104 HOH HOH . D 4 HOH A 105 477 105 HOH HOH . D 4 HOH A 106 478 106 HOH HOH . D 4 HOH A 107 479 107 HOH HOH . D 4 HOH A 108 480 108 HOH HOH . D 4 HOH A 109 481 109 HOH HOH . D 4 HOH A 110 482 110 HOH HOH . D 4 HOH A 111 483 111 HOH HOH . D 4 HOH A 112 484 112 HOH HOH . D 4 HOH A 113 485 113 HOH HOH . D 4 HOH A 114 486 114 HOH HOH . D 4 HOH A 115 487 115 HOH HOH . D 4 HOH A 116 488 116 HOH HOH . D 4 HOH A 117 489 117 HOH HOH . D 4 HOH A 118 490 118 HOH HOH . D 4 HOH A 119 491 119 HOH HOH . D 4 HOH A 120 492 120 HOH HOH . D 4 HOH A 121 493 121 HOH HOH . D 4 HOH A 122 494 122 HOH HOH . D 4 HOH A 123 495 123 HOH HOH . D 4 HOH A 124 496 124 HOH HOH . D 4 HOH A 125 497 125 HOH HOH . D 4 HOH A 126 498 126 HOH HOH . D 4 HOH A 127 499 127 HOH HOH . D 4 HOH A 128 500 128 HOH HOH . D 4 HOH A 129 501 129 HOH HOH . D 4 HOH A 130 502 130 HOH HOH . D 4 HOH A 131 503 131 HOH HOH . D 4 HOH A 132 504 132 HOH HOH . D 4 HOH A 133 505 133 HOH HOH . D 4 HOH A 134 506 134 HOH HOH . D 4 HOH A 135 507 135 HOH HOH . D 4 HOH A 136 508 136 HOH HOH . D 4 HOH A 137 509 137 HOH HOH . D 4 HOH A 138 510 138 HOH HOH . D 4 HOH A 139 511 139 HOH HOH . D 4 HOH A 140 512 140 HOH HOH . D 4 HOH A 141 513 141 HOH HOH . D 4 HOH A 142 514 142 HOH HOH . D 4 HOH A 143 515 143 HOH HOH . D 4 HOH A 144 516 144 HOH HOH . D 4 HOH A 145 517 145 HOH HOH . D 4 HOH A 146 518 146 HOH HOH . D 4 HOH A 147 519 147 HOH HOH . D 4 HOH A 148 520 148 HOH HOH . D 4 HOH A 149 521 149 HOH HOH . D 4 HOH A 150 522 150 HOH HOH . D 4 HOH A 151 523 151 HOH HOH . D 4 HOH A 152 524 152 HOH HOH . D 4 HOH A 153 525 153 HOH HOH . D 4 HOH A 154 526 154 HOH HOH . D 4 HOH A 155 527 155 HOH HOH . D 4 HOH A 156 528 156 HOH HOH . D 4 HOH A 157 529 157 HOH HOH . D 4 HOH A 158 530 158 HOH HOH . D 4 HOH A 159 531 159 HOH HOH . D 4 HOH A 160 532 160 HOH HOH . D 4 HOH A 161 533 161 HOH HOH . D 4 HOH A 162 534 162 HOH HOH . D 4 HOH A 163 535 163 HOH HOH . D 4 HOH A 164 536 164 HOH HOH . D 4 HOH A 165 537 165 HOH HOH . D 4 HOH A 166 538 166 HOH HOH . D 4 HOH A 167 539 167 HOH HOH . D 4 HOH A 168 540 168 HOH HOH . D 4 HOH A 169 541 169 HOH HOH . D 4 HOH A 170 542 170 HOH HOH . D 4 HOH A 171 543 171 HOH HOH . D 4 HOH A 172 544 172 HOH HOH . D 4 HOH A 173 545 173 HOH HOH . D 4 HOH A 174 546 174 HOH HOH . D 4 HOH A 175 547 175 HOH HOH . D 4 HOH A 176 548 176 HOH HOH . D 4 HOH A 177 549 177 HOH HOH . D 4 HOH A 178 550 178 HOH HOH . D 4 HOH A 179 551 179 HOH HOH . D 4 HOH A 180 552 180 HOH HOH . D 4 HOH A 181 553 181 HOH HOH . D 4 HOH A 182 554 182 HOH HOH . D 4 HOH A 183 555 183 HOH HOH . D 4 HOH A 184 556 184 HOH HOH . D 4 HOH A 185 557 185 HOH HOH . D 4 HOH A 186 558 186 HOH HOH . D 4 HOH A 187 559 187 HOH HOH . D 4 HOH A 188 560 188 HOH HOH . D 4 HOH A 189 561 189 HOH HOH . D 4 HOH A 190 562 190 HOH HOH . D 4 HOH A 191 563 191 HOH HOH . D 4 HOH A 192 564 192 HOH HOH . D 4 HOH A 193 565 193 HOH HOH . D 4 HOH A 194 566 194 HOH HOH . D 4 HOH A 195 567 195 HOH HOH . D 4 HOH A 196 568 196 HOH HOH . D 4 HOH A 197 569 197 HOH HOH . D 4 HOH A 198 570 198 HOH HOH . D 4 HOH A 199 571 199 HOH HOH . D 4 HOH A 200 572 200 HOH HOH . D 4 HOH A 201 573 201 HOH HOH . D 4 HOH A 202 574 202 HOH HOH . D 4 HOH A 203 575 203 HOH HOH . D 4 HOH A 204 576 204 HOH HOH . D 4 HOH A 205 577 205 HOH HOH . D 4 HOH A 206 578 206 HOH HOH . D 4 HOH A 207 579 207 HOH HOH . D 4 HOH A 208 580 208 HOH HOH . D 4 HOH A 209 581 209 HOH HOH . D 4 HOH A 210 582 210 HOH HOH . D 4 HOH A 211 583 211 HOH HOH . D 4 HOH A 212 584 212 HOH HOH . D 4 HOH A 213 585 213 HOH HOH . D 4 HOH A 214 586 214 HOH HOH . D 4 HOH A 215 587 215 HOH HOH . D 4 HOH A 216 588 216 HOH HOH . D 4 HOH A 217 589 217 HOH HOH . D 4 HOH A 218 590 218 HOH HOH . D 4 HOH A 219 591 219 HOH HOH . D 4 HOH A 220 592 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 13.022 -28.364 22.884 1 44.14 ? N1 FMN 372 A 1 HETATM 2 C C2 FMN . . . C 3 13.863 -29.37 22.416 1 43.59 ? C2 FMN 372 A 1 HETATM 3 O O2 FMN . . . C 3 14.033 -29.505 21.206 1 41.76 ? O2 FMN 372 A 1 HETATM 4 N N3 FMN . . . C 3 14.519 -30.205 23.35 1 44.34 ? N3 FMN 372 A 1 HETATM 5 C C4 FMN . . . C 3 14.319 -30.037 24.728 1 44.48 ? C4 FMN 372 A 1 HETATM 6 O O4 FMN . . . C 3 14.895 -30.799 25.51 1 44.02 ? O4 FMN 372 A 1 HETATM 7 C C4A FMN . . . C 3 13.459 -29.022 25.184 1 44.36 ? C4A FMN 372 A 1 HETATM 8 N N5 FMN . . . C 3 13.243 -28.84 26.562 1 44.1 ? N5 FMN 372 A 1 HETATM 9 C C5A FMN . . . C 3 12.389 -27.856 27.017 1 43.87 ? C5A FMN 372 A 1 HETATM 10 C C6 FMN . . . C 3 12.225 -27.728 28.394 1 44.56 ? C6 FMN 372 A 1 HETATM 11 C C7 FMN . . . C 3 11.383 -26.741 28.892 1 44.48 ? C7 FMN 372 A 1 HETATM 12 C C7M FMN . . . C 3 11.188 -26.624 30.396 1 44.3 ? C7M FMN 372 A 1 HETATM 13 C C8 FMN . . . C 3 10.708 -25.878 28.009 1 45.68 ? C8 FMN 372 A 1 HETATM 14 C C8M FMN . . . C 3 9.779 -24.797 28.548 1 44.69 ? C8M FMN 372 A 1 HETATM 15 C C9 FMN . . . C 3 10.885 -25.992 26.617 1 46.04 ? C9 FMN 372 A 1 HETATM 16 C C9A FMN . . . C 3 11.745 -26.984 26.11 1 45.2 ? C9A FMN 372 A 1 HETATM 17 N N10 FMN . . . C 3 11.933 -27.155 24.713 1 43.74 ? N10 FMN 372 A 1 HETATM 18 C C10 FMN . . . C 3 12.81 -28.172 24.266 1 44.7 ? C10 FMN 372 A 1 HETATM 19 C C1' FMN . . . C 3 11.145 -26.378 23.712 1 41.82 ? C1' FMN 372 A 1 HETATM 20 C C2' FMN . . . C 3 9.817 -27.155 23.474 1 40.5 ? C2' FMN 372 A 1 HETATM 21 O O2' FMN . . . C 3 10.006 -28.352 22.647 1 38.75 ? O2' FMN 372 A 1 HETATM 22 C C3' FMN . . . C 3 8.699 -26.286 22.867 1 39.17 ? C3' FMN 372 A 1 HETATM 23 O O3' FMN . . . C 3 9.188 -25.689 21.681 1 39.45 ? O3' FMN 372 A 1 HETATM 24 C C4' FMN . . . C 3 8.13 -25.206 23.782 1 38.65 ? C4' FMN 372 A 1 HETATM 25 O O4' FMN . . . C 3 8.044 -25.609 25.172 1 39.8 ? O4' FMN 372 A 1 HETATM 26 C C5' FMN . . . C 3 6.724 -24.889 23.291 1 36.74 ? C5' FMN 372 A 1 HETATM 27 O O5' FMN . . . C 3 6.294 -23.661 23.811 1 32.6 ? O5' FMN 372 A 1 HETATM 28 P P FMN . . . C 3 5.333 -23.628 25.065 1 28.02 ? P FMN 372 A 1 HETATM 29 O O1P FMN . . . C 3 4.121 -24.462 25.002 1 31.38 ? O1P FMN 372 A 1 HETATM 30 O O2P FMN . . . C 3 6.312 -23.982 26.29 1 33.17 ? O2P FMN 372 A 1 HETATM 31 O O3P FMN . . . C 3 4.983 -22.128 25.209 1 26.52 ? O3P FMN 372 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #