data_2RF8
#
_model_server_result.job_id            1eTHCw_Uk-rN2gx3ulmWRw 
_model_server_result.datetime_utc      '2024-10-12 21:16:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rf8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":334}' 
#
_entry.id    2RF8 
#
_exptl.entry_id    2RF8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RF8 
_cell.length_a            64.64 
_cell.length_b            64.64 
_cell.length_c            338.833 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RF8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1,2 
A,C,D,F 2 1,3 
B,E,G 2 2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_554 y,x,-z-1/4 0 1 0 1 0 0 0 0 -1 0 0 -84.70825 
3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 3_555 -y,x,z+1/4 0 -1 0 1 0 0 0 0 1 0 0 84.70825 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2RF8 
_atom_sites.fract_transf_matrix[1][1]    0.01547 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01547 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 332 332 GOL GOL . 
D 2 GOL A 1 334 334 GOL GOL . 
E 2 GOL B 1 333 333 GOL GOL . 
F 3 HOH A 1 335 1 HOH HOH . 
F 3 HOH A 2 336 2 HOH HOH . 
F 3 HOH A 3 337 4 HOH HOH . 
F 3 HOH A 4 338 5 HOH HOH . 
F 3 HOH A 5 339 7 HOH HOH . 
F 3 HOH A 6 340 9 HOH HOH . 
F 3 HOH A 7 341 13 HOH HOH . 
F 3 HOH A 8 342 14 HOH HOH . 
F 3 HOH A 9 343 15 HOH HOH . 
F 3 HOH A 10 344 16 HOH HOH . 
F 3 HOH A 11 345 18 HOH HOH . 
F 3 HOH A 12 346 19 HOH HOH . 
F 3 HOH A 13 347 20 HOH HOH . 
F 3 HOH A 14 348 22 HOH HOH . 
F 3 HOH A 15 349 25 HOH HOH . 
F 3 HOH A 16 350 28 HOH HOH . 
F 3 HOH A 17 351 35 HOH HOH . 
F 3 HOH A 18 352 37 HOH HOH . 
F 3 HOH A 19 353 38 HOH HOH . 
F 3 HOH A 20 354 40 HOH HOH . 
F 3 HOH A 21 355 41 HOH HOH . 
F 3 HOH A 22 356 42 HOH HOH . 
F 3 HOH A 23 357 43 HOH HOH . 
F 3 HOH A 24 358 45 HOH HOH . 
F 3 HOH A 25 359 47 HOH HOH . 
F 3 HOH A 26 360 48 HOH HOH . 
F 3 HOH A 27 361 49 HOH HOH . 
F 3 HOH A 28 362 51 HOH HOH . 
F 3 HOH A 29 363 52 HOH HOH . 
F 3 HOH A 30 364 54 HOH HOH . 
F 3 HOH A 31 365 55 HOH HOH . 
F 3 HOH A 32 366 56 HOH HOH . 
F 3 HOH A 33 367 57 HOH HOH . 
F 3 HOH A 34 368 58 HOH HOH . 
F 3 HOH A 35 369 59 HOH HOH . 
F 3 HOH A 36 370 61 HOH HOH . 
F 3 HOH A 37 371 62 HOH HOH . 
F 3 HOH A 38 372 65 HOH HOH . 
F 3 HOH A 39 373 68 HOH HOH . 
F 3 HOH A 40 374 69 HOH HOH . 
F 3 HOH A 41 375 72 HOH HOH . 
F 3 HOH A 42 376 74 HOH HOH . 
F 3 HOH A 43 377 75 HOH HOH . 
F 3 HOH A 44 378 76 HOH HOH . 
F 3 HOH A 45 379 78 HOH HOH . 
F 3 HOH A 46 380 80 HOH HOH . 
F 3 HOH A 47 381 81 HOH HOH . 
F 3 HOH A 48 382 82 HOH HOH . 
F 3 HOH A 49 383 83 HOH HOH . 
F 3 HOH A 50 384 84 HOH HOH . 
F 3 HOH A 51 385 85 HOH HOH . 
F 3 HOH A 52 386 87 HOH HOH . 
F 3 HOH A 53 387 88 HOH HOH . 
F 3 HOH A 54 388 90 HOH HOH . 
F 3 HOH A 55 389 91 HOH HOH . 
F 3 HOH A 56 390 98 HOH HOH . 
F 3 HOH A 57 391 99 HOH HOH . 
F 3 HOH A 58 392 103 HOH HOH . 
F 3 HOH A 59 393 104 HOH HOH . 
F 3 HOH A 60 394 109 HOH HOH . 
F 3 HOH A 61 395 111 HOH HOH . 
F 3 HOH A 62 396 116 HOH HOH . 
F 3 HOH A 63 397 117 HOH HOH . 
F 3 HOH A 64 398 118 HOH HOH . 
F 3 HOH A 65 399 123 HOH HOH . 
F 3 HOH A 66 400 125 HOH HOH . 
F 3 HOH A 67 401 131 HOH HOH . 
F 3 HOH A 68 402 132 HOH HOH . 
F 3 HOH A 69 403 134 HOH HOH . 
F 3 HOH A 70 404 135 HOH HOH . 
F 3 HOH A 71 405 138 HOH HOH . 
F 3 HOH A 72 406 139 HOH HOH . 
F 3 HOH A 73 407 140 HOH HOH . 
F 3 HOH A 74 408 144 HOH HOH . 
F 3 HOH A 75 409 145 HOH HOH . 
F 3 HOH A 76 410 146 HOH HOH . 
F 3 HOH A 77 411 149 HOH HOH . 
F 3 HOH A 78 412 150 HOH HOH . 
F 3 HOH A 79 413 151 HOH HOH . 
F 3 HOH A 80 414 152 HOH HOH . 
F 3 HOH A 81 415 153 HOH HOH . 
F 3 HOH A 82 416 157 HOH HOH . 
F 3 HOH A 83 417 158 HOH HOH . 
F 3 HOH A 84 418 159 HOH HOH . 
F 3 HOH A 85 419 160 HOH HOH . 
F 3 HOH A 86 420 163 HOH HOH . 
F 3 HOH A 87 421 164 HOH HOH . 
F 3 HOH A 88 422 166 HOH HOH . 
F 3 HOH A 89 423 167 HOH HOH . 
F 3 HOH A 90 424 170 HOH HOH . 
F 3 HOH A 91 425 171 HOH HOH . 
F 3 HOH A 92 426 174 HOH HOH . 
F 3 HOH A 93 427 182 HOH HOH . 
F 3 HOH A 94 428 186 HOH HOH . 
F 3 HOH A 95 429 187 HOH HOH . 
F 3 HOH A 96 430 188 HOH HOH . 
F 3 HOH A 97 431 192 HOH HOH . 
F 3 HOH A 98 432 193 HOH HOH . 
F 3 HOH A 99 433 201 HOH HOH . 
F 3 HOH A 100 434 202 HOH HOH . 
F 3 HOH A 101 435 203 HOH HOH . 
F 3 HOH A 102 436 204 HOH HOH . 
F 3 HOH A 103 437 205 HOH HOH . 
F 3 HOH A 104 438 206 HOH HOH . 
F 3 HOH A 105 439 208 HOH HOH . 
F 3 HOH A 106 440 209 HOH HOH . 
F 3 HOH A 107 441 211 HOH HOH . 
F 3 HOH A 108 442 213 HOH HOH . 
G 3 HOH B 1 334 3 HOH HOH . 
G 3 HOH B 2 335 6 HOH HOH . 
G 3 HOH B 3 336 8 HOH HOH . 
G 3 HOH B 4 337 10 HOH HOH . 
G 3 HOH B 5 338 11 HOH HOH . 
G 3 HOH B 6 339 12 HOH HOH . 
G 3 HOH B 7 340 17 HOH HOH . 
G 3 HOH B 8 341 21 HOH HOH . 
G 3 HOH B 9 342 23 HOH HOH . 
G 3 HOH B 10 343 24 HOH HOH . 
G 3 HOH B 11 344 26 HOH HOH . 
G 3 HOH B 12 345 27 HOH HOH . 
G 3 HOH B 13 346 29 HOH HOH . 
G 3 HOH B 14 347 30 HOH HOH . 
G 3 HOH B 15 348 31 HOH HOH . 
G 3 HOH B 16 349 32 HOH HOH . 
G 3 HOH B 17 350 33 HOH HOH . 
G 3 HOH B 18 351 34 HOH HOH . 
G 3 HOH B 19 352 36 HOH HOH . 
G 3 HOH B 20 353 39 HOH HOH . 
G 3 HOH B 21 354 44 HOH HOH . 
G 3 HOH B 22 355 46 HOH HOH . 
G 3 HOH B 23 356 50 HOH HOH . 
G 3 HOH B 24 357 53 HOH HOH . 
G 3 HOH B 25 358 60 HOH HOH . 
G 3 HOH B 26 359 63 HOH HOH . 
G 3 HOH B 27 360 64 HOH HOH . 
G 3 HOH B 28 361 66 HOH HOH . 
G 3 HOH B 29 362 67 HOH HOH . 
G 3 HOH B 30 363 70 HOH HOH . 
G 3 HOH B 31 364 71 HOH HOH . 
G 3 HOH B 32 365 73 HOH HOH . 
G 3 HOH B 33 366 77 HOH HOH . 
G 3 HOH B 34 367 79 HOH HOH . 
G 3 HOH B 35 368 86 HOH HOH . 
G 3 HOH B 36 369 89 HOH HOH . 
G 3 HOH B 37 370 92 HOH HOH . 
G 3 HOH B 38 371 93 HOH HOH . 
G 3 HOH B 39 372 94 HOH HOH . 
G 3 HOH B 40 373 95 HOH HOH . 
G 3 HOH B 41 374 96 HOH HOH . 
G 3 HOH B 42 375 97 HOH HOH . 
G 3 HOH B 43 376 100 HOH HOH . 
G 3 HOH B 44 377 101 HOH HOH . 
G 3 HOH B 45 378 102 HOH HOH . 
G 3 HOH B 46 379 105 HOH HOH . 
G 3 HOH B 47 380 106 HOH HOH . 
G 3 HOH B 48 381 107 HOH HOH . 
G 3 HOH B 49 382 108 HOH HOH . 
G 3 HOH B 50 383 110 HOH HOH . 
G 3 HOH B 51 384 112 HOH HOH . 
G 3 HOH B 52 385 113 HOH HOH . 
G 3 HOH B 53 386 114 HOH HOH . 
G 3 HOH B 54 387 115 HOH HOH . 
G 3 HOH B 55 388 119 HOH HOH . 
G 3 HOH B 56 389 120 HOH HOH . 
G 3 HOH B 57 390 121 HOH HOH . 
G 3 HOH B 58 391 122 HOH HOH . 
G 3 HOH B 59 392 124 HOH HOH . 
G 3 HOH B 60 393 126 HOH HOH . 
G 3 HOH B 61 394 127 HOH HOH . 
G 3 HOH B 62 395 128 HOH HOH . 
G 3 HOH B 63 396 129 HOH HOH . 
G 3 HOH B 64 397 130 HOH HOH . 
G 3 HOH B 65 398 133 HOH HOH . 
G 3 HOH B 66 399 136 HOH HOH . 
G 3 HOH B 67 400 137 HOH HOH . 
G 3 HOH B 68 401 141 HOH HOH . 
G 3 HOH B 69 402 142 HOH HOH . 
G 3 HOH B 70 403 143 HOH HOH . 
G 3 HOH B 71 404 147 HOH HOH . 
G 3 HOH B 72 405 148 HOH HOH . 
G 3 HOH B 73 406 154 HOH HOH . 
G 3 HOH B 74 407 155 HOH HOH . 
G 3 HOH B 75 408 156 HOH HOH . 
G 3 HOH B 76 409 161 HOH HOH . 
G 3 HOH B 77 410 162 HOH HOH . 
G 3 HOH B 78 411 165 HOH HOH . 
G 3 HOH B 79 412 168 HOH HOH . 
G 3 HOH B 80 413 169 HOH HOH . 
G 3 HOH B 81 414 172 HOH HOH . 
G 3 HOH B 82 415 173 HOH HOH . 
G 3 HOH B 83 416 175 HOH HOH . 
G 3 HOH B 84 417 176 HOH HOH . 
G 3 HOH B 85 418 177 HOH HOH . 
G 3 HOH B 86 419 178 HOH HOH . 
G 3 HOH B 87 420 179 HOH HOH . 
G 3 HOH B 88 421 180 HOH HOH . 
G 3 HOH B 89 422 181 HOH HOH . 
G 3 HOH B 90 423 183 HOH HOH . 
G 3 HOH B 91 424 184 HOH HOH . 
G 3 HOH B 92 425 185 HOH HOH . 
G 3 HOH B 93 426 189 HOH HOH . 
G 3 HOH B 94 427 190 HOH HOH . 
G 3 HOH B 95 428 191 HOH HOH . 
G 3 HOH B 96 429 194 HOH HOH . 
G 3 HOH B 97 430 195 HOH HOH . 
G 3 HOH B 98 431 196 HOH HOH . 
G 3 HOH B 99 432 197 HOH HOH . 
G 3 HOH B 100 433 198 HOH HOH . 
G 3 HOH B 101 434 199 HOH HOH . 
G 3 HOH B 102 435 200 HOH HOH . 
G 3 HOH B 103 436 207 HOH HOH . 
G 3 HOH B 104 437 210 HOH HOH . 
G 3 HOH B 105 438 212 HOH HOH . 
G 3 HOH B 106 439 214 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -2.127 -16.725 -0.181 1 49.64 ? C1 GOL 334 A 1 
HETATM 2 O O1 GOL . . . D 2 -1.4 -17.873 0.194 1 49.58 ? O1 GOL 334 A 1 
HETATM 3 C C2 GOL . . . D 2 -1.291 -15.937 -1.177 1 49.75 ? C2 GOL 334 A 1 
HETATM 4 O O2 GOL . . . D 2 -1.198 -16.665 -2.378 1 49.77 ? O2 GOL 334 A 1 
HETATM 5 C C3 GOL . . . D 2 -1.882 -14.55 -1.396 1 49.92 ? C3 GOL 334 A 1 
HETATM 6 O O3 GOL . . . D 2 -0.866 -13.631 -1.742 1 49.94 ? O3 GOL 334 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#