data_2RFC
#
_model_server_result.job_id            kAJ4mm86NhbKCvA3FfUsjA 
_model_server_result.datetime_utc      '2024-10-19 12:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":411}' 
#
_entry.id    2RFC 
#
_exptl.entry_id    2RFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-PHENYL-1H-IMIDAZOLE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.3 
_cell.angle_gamma         90 
_cell.entry_id            2RFC 
_cell.length_a            48.52 
_cell.length_b            141.01 
_cell.length_c            101.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 295 A CYS 304 1_555 E FE HEM . A HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc2 E FE HEM . A HEM 410 1_555 F N3 PIM . A PIM 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc3 B SG CYS 295 B CYS 304 1_555 G FE HEM . B HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc4 G FE HEM . B HEM 410 1_555 H N3 PIM . B PIM 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc5 C SG CYS 295 C CYS 304 1_555 I FE HEM . C HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc6 I FE HEM . C HEM 410 1_555 J N3 PIM . C PIM 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc7 D SG CYS 295 D CYS 304 1_555 K FE HEM . D HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc8 K FE HEM . D HEM 410 1_555 L N3 PIM . D PIM 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
#
_chem_comp.formula           'C9 H8 N2' 
_chem_comp.formula_weight    144.173 
_chem_comp.id                PIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-PHENYL-1H-IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PIM sing 342 n y 
N1 C5 PIM sing 343 n y 
N1 HN1 PIM sing 344 n n 
C2 N3 PIM doub 345 n y 
C2 H2 PIM sing 346 n n 
N3 C4 PIM sing 347 n y 
C4 C5 PIM doub 348 n y 
C4 H4 PIM sing 349 n n 
C5 C6 PIM sing 350 n y 
C6 C7 PIM doub 351 n y 
C6 C11 PIM sing 352 n y 
C7 C8 PIM sing 353 n y 
C7 H7 PIM sing 354 n n 
C8 C9 PIM doub 355 n y 
C8 H8 PIM sing 356 n n 
C9 C10 PIM sing 357 n y 
C9 H9 PIM sing 358 n n 
C10 C11 PIM doub 359 n y 
C10 H10 PIM sing 360 n n 
C11 H11 PIM sing 361 n n 
#
_atom_sites.entry_id                     2RFC 
_atom_sites.fract_transf_matrix[1][1]    0.02061 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000108 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007092 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 410 410 HEM HEM . 
F 3 PIM A 1 411 411 PIM PIM . 
G 2 HEM B 1 410 410 HEM HEM . 
H 3 PIM B 1 411 411 PIM PIM . 
I 2 HEM C 1 410 410 HEM HEM . 
J 3 PIM C 1 411 411 PIM PIM . 
K 2 HEM D 1 410 410 HEM HEM . 
L 3 PIM D 1 411 411 PIM PIM . 
M 4 HOH A 1 412 2 HOH HOH . 
M 4 HOH A 2 413 3 HOH HOH . 
M 4 HOH A 3 414 4 HOH HOH . 
M 4 HOH A 4 415 5 HOH HOH . 
M 4 HOH A 5 416 19 HOH HOH . 
N 4 HOH B 1 412 1 HOH HOH . 
N 4 HOH B 2 413 7 HOH HOH . 
N 4 HOH B 3 414 9 HOH HOH . 
N 4 HOH B 4 415 10 HOH HOH . 
N 4 HOH B 5 416 17 HOH HOH . 
O 4 HOH C 1 412 6 HOH HOH . 
O 4 HOH C 2 413 8 HOH HOH . 
O 4 HOH C 3 414 11 HOH HOH . 
O 4 HOH C 4 415 12 HOH HOH . 
O 4 HOH C 5 416 13 HOH HOH . 
O 4 HOH C 6 417 14 HOH HOH . 
O 4 HOH C 7 418 15 HOH HOH . 
O 4 HOH C 8 419 16 HOH HOH . 
O 4 HOH C 9 420 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PIM . . . H 3 16.094 -13.915 50.358 1 42.12 ? N1 PIM 411 B 1 
HETATM 2 C C2 PIM . . . H 3 15.539 -12.638 50.564 1 42.12 ? C2 PIM 411 B 1 
HETATM 3 N N3 PIM . . . H 3 14.605 -12.437 49.646 1 42.12 ? N3 PIM 411 B 1 
HETATM 4 C C4 PIM . . . H 3 14.542 -13.519 48.878 1 42.12 ? C4 PIM 411 B 1 
HETATM 5 C C5 PIM . . . H 3 15.451 -14.432 49.303 1 42.12 ? C5 PIM 411 B 1 
HETATM 6 C C6 PIM . . . H 3 15.679 -15.799 48.658 1 42.12 ? C6 PIM 411 B 1 
HETATM 7 C C7 PIM . . . H 3 16.889 -15.986 47.836 1 42.12 ? C7 PIM 411 B 1 
HETATM 8 C C8 PIM . . . H 3 17.135 -17.297 47.193 1 42.12 ? C8 PIM 411 B 1 
HETATM 9 C C9 PIM . . . H 3 16.174 -18.35 47.395 1 42.12 ? C9 PIM 411 B 1 
HETATM 10 C C10 PIM . . . H 3 14.974 -18.16 48.211 1 42.12 ? C10 PIM 411 B 1 
HETATM 11 C C11 PIM . . . H 3 14.761 -16.853 48.831 1 42.12 ? C11 PIM 411 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#