data_2RFX
#
_model_server_result.job_id            rZg8Q6NCAiOgxfzJJqYF7w 
_model_server_result.datetime_utc      '2024-11-01 21:32:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rfx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":3732}' 
#
_entry.id    2RFX 
#
_exptl.entry_id    2RFX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.7 
_cell.angle_gamma         90 
_cell.entry_id            2RFX 
_cell.length_a            64.844 
_cell.length_b            49.029 
_cell.length_c            70.666 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RFX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2RFX 
_atom_sites.fract_transf_matrix[1][1]    0.015422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002914 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020396 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 3731 3731 GOL GOL . 
E 4 GOL A 1 3732 3732 GOL GOL . 
F 4 GOL B 1 3731 3731 GOL GOL . 
G 4 GOL B 1 3732 3732 GOL GOL . 
H 5 HOH A 1 3733 3733 HOH HOH . 
H 5 HOH A 2 3734 3734 HOH HOH . 
H 5 HOH A 3 3735 3735 HOH HOH . 
H 5 HOH A 4 3736 3736 HOH HOH . 
H 5 HOH A 5 3737 3737 HOH HOH . 
H 5 HOH A 6 3738 3738 HOH HOH . 
H 5 HOH A 7 3739 3739 HOH HOH . 
H 5 HOH A 8 3740 3740 HOH HOH . 
H 5 HOH A 9 3741 3741 HOH HOH . 
H 5 HOH A 10 3742 3742 HOH HOH . 
H 5 HOH A 11 3743 3743 HOH HOH . 
H 5 HOH A 12 3744 3744 HOH HOH . 
H 5 HOH A 13 3745 3745 HOH HOH . 
H 5 HOH A 14 3746 3746 HOH HOH . 
H 5 HOH A 15 3747 3747 HOH HOH . 
H 5 HOH A 16 3748 3748 HOH HOH . 
H 5 HOH A 17 3749 3749 HOH HOH . 
H 5 HOH A 18 3750 3750 HOH HOH . 
H 5 HOH A 19 3751 3751 HOH HOH . 
H 5 HOH A 20 3752 3752 HOH HOH . 
H 5 HOH A 21 3753 3753 HOH HOH . 
H 5 HOH A 22 3754 3754 HOH HOH . 
H 5 HOH A 23 3755 3755 HOH HOH . 
H 5 HOH A 24 3756 3756 HOH HOH . 
H 5 HOH A 25 3757 3757 HOH HOH . 
H 5 HOH A 26 3758 3758 HOH HOH . 
H 5 HOH A 27 3759 3759 HOH HOH . 
H 5 HOH A 28 3760 3760 HOH HOH . 
H 5 HOH A 29 3761 3761 HOH HOH . 
H 5 HOH A 30 3762 3762 HOH HOH . 
H 5 HOH A 31 3763 3763 HOH HOH . 
H 5 HOH A 32 3764 3764 HOH HOH . 
H 5 HOH A 33 3765 3765 HOH HOH . 
H 5 HOH A 34 3766 3766 HOH HOH . 
H 5 HOH A 35 3767 3767 HOH HOH . 
H 5 HOH A 36 3768 3768 HOH HOH . 
H 5 HOH A 37 3769 3769 HOH HOH . 
H 5 HOH A 38 3770 3770 HOH HOH . 
H 5 HOH A 39 3771 3771 HOH HOH . 
H 5 HOH A 40 3772 3772 HOH HOH . 
H 5 HOH A 41 3773 3773 HOH HOH . 
H 5 HOH A 42 3774 3774 HOH HOH . 
H 5 HOH A 43 3775 3775 HOH HOH . 
H 5 HOH A 44 3776 3776 HOH HOH . 
H 5 HOH A 45 3777 3777 HOH HOH . 
H 5 HOH A 46 3778 3778 HOH HOH . 
H 5 HOH A 47 3779 3779 HOH HOH . 
H 5 HOH A 48 3780 3780 HOH HOH . 
H 5 HOH A 49 3781 3781 HOH HOH . 
H 5 HOH A 50 3782 3782 HOH HOH . 
H 5 HOH A 51 3783 3783 HOH HOH . 
H 5 HOH A 52 3784 3784 HOH HOH . 
H 5 HOH A 53 3785 3785 HOH HOH . 
H 5 HOH A 54 3786 3786 HOH HOH . 
H 5 HOH A 55 3787 3787 HOH HOH . 
H 5 HOH A 56 3788 3788 HOH HOH . 
H 5 HOH A 57 3789 3789 HOH HOH . 
H 5 HOH A 58 3790 3790 HOH HOH . 
H 5 HOH A 59 3791 3791 HOH HOH . 
H 5 HOH A 60 3792 3792 HOH HOH . 
H 5 HOH A 61 3793 3793 HOH HOH . 
H 5 HOH A 62 3794 3794 HOH HOH . 
H 5 HOH A 63 3795 3795 HOH HOH . 
H 5 HOH A 64 3796 3796 HOH HOH . 
H 5 HOH A 65 3797 3797 HOH HOH . 
H 5 HOH A 66 3798 3798 HOH HOH . 
H 5 HOH A 67 3799 3799 HOH HOH . 
H 5 HOH A 68 3800 3800 HOH HOH . 
H 5 HOH A 69 3801 3801 HOH HOH . 
H 5 HOH A 70 3802 3802 HOH HOH . 
H 5 HOH A 71 3803 3803 HOH HOH . 
H 5 HOH A 72 3804 3804 HOH HOH . 
H 5 HOH A 73 3805 3805 HOH HOH . 
H 5 HOH A 74 3806 3806 HOH HOH . 
H 5 HOH A 75 3807 3807 HOH HOH . 
H 5 HOH A 76 3808 3808 HOH HOH . 
H 5 HOH A 77 3809 3809 HOH HOH . 
H 5 HOH A 78 3810 3810 HOH HOH . 
H 5 HOH A 79 3811 3811 HOH HOH . 
H 5 HOH A 80 3812 3812 HOH HOH . 
H 5 HOH A 81 3813 3813 HOH HOH . 
H 5 HOH A 82 3814 3814 HOH HOH . 
H 5 HOH A 83 3815 3815 HOH HOH . 
H 5 HOH A 84 3816 3816 HOH HOH . 
H 5 HOH A 85 3817 3817 HOH HOH . 
H 5 HOH A 86 3818 3818 HOH HOH . 
H 5 HOH A 87 3819 3819 HOH HOH . 
H 5 HOH A 88 3820 3820 HOH HOH . 
H 5 HOH A 89 3821 3821 HOH HOH . 
H 5 HOH A 90 3822 3822 HOH HOH . 
H 5 HOH A 91 3823 3823 HOH HOH . 
H 5 HOH A 92 3824 3824 HOH HOH . 
H 5 HOH A 93 3825 3825 HOH HOH . 
H 5 HOH A 94 3826 3826 HOH HOH . 
H 5 HOH A 95 3827 3827 HOH HOH . 
H 5 HOH A 96 3828 3828 HOH HOH . 
H 5 HOH A 97 3829 3829 HOH HOH . 
H 5 HOH A 98 3830 3830 HOH HOH . 
H 5 HOH A 99 3831 3831 HOH HOH . 
H 5 HOH A 100 3832 3832 HOH HOH . 
H 5 HOH A 101 3833 3833 HOH HOH . 
H 5 HOH A 102 3834 3834 HOH HOH . 
H 5 HOH A 103 3835 3835 HOH HOH . 
H 5 HOH A 104 3836 3836 HOH HOH . 
H 5 HOH A 105 3837 3837 HOH HOH . 
H 5 HOH A 106 3838 3838 HOH HOH . 
H 5 HOH A 107 3839 3839 HOH HOH . 
H 5 HOH A 108 3840 3840 HOH HOH . 
H 5 HOH A 109 3841 3841 HOH HOH . 
H 5 HOH A 110 3842 3842 HOH HOH . 
H 5 HOH A 111 3843 3843 HOH HOH . 
H 5 HOH A 112 3844 3844 HOH HOH . 
H 5 HOH A 113 3845 3845 HOH HOH . 
H 5 HOH A 114 3846 3846 HOH HOH . 
H 5 HOH A 115 3847 3847 HOH HOH . 
H 5 HOH A 116 3848 3848 HOH HOH . 
H 5 HOH A 117 3849 3849 HOH HOH . 
H 5 HOH A 118 3850 3850 HOH HOH . 
H 5 HOH A 119 3851 3851 HOH HOH . 
H 5 HOH A 120 3852 3852 HOH HOH . 
H 5 HOH A 121 3853 3853 HOH HOH . 
H 5 HOH A 122 3854 3854 HOH HOH . 
H 5 HOH A 123 3855 3855 HOH HOH . 
H 5 HOH A 124 3856 3856 HOH HOH . 
H 5 HOH A 125 3857 3857 HOH HOH . 
H 5 HOH A 126 3858 3858 HOH HOH . 
H 5 HOH A 127 3859 3859 HOH HOH . 
H 5 HOH A 128 3860 3860 HOH HOH . 
H 5 HOH A 129 3861 3861 HOH HOH . 
H 5 HOH A 130 3862 3862 HOH HOH . 
H 5 HOH A 131 3863 3863 HOH HOH . 
H 5 HOH A 132 3864 3864 HOH HOH . 
H 5 HOH A 133 3865 3740 HOH HOH . 
H 5 HOH A 134 3866 3781 HOH HOH . 
I 5 HOH B 1 3733 3733 HOH HOH . 
I 5 HOH B 2 3734 3734 HOH HOH . 
I 5 HOH B 3 3735 3735 HOH HOH . 
I 5 HOH B 4 3736 3736 HOH HOH . 
I 5 HOH B 5 3737 3737 HOH HOH . 
I 5 HOH B 6 3738 3738 HOH HOH . 
I 5 HOH B 7 3739 3739 HOH HOH . 
I 5 HOH B 8 3740 3741 HOH HOH . 
I 5 HOH B 9 3741 3742 HOH HOH . 
I 5 HOH B 10 3742 3743 HOH HOH . 
I 5 HOH B 11 3743 3744 HOH HOH . 
I 5 HOH B 12 3744 3745 HOH HOH . 
I 5 HOH B 13 3745 3746 HOH HOH . 
I 5 HOH B 14 3746 3747 HOH HOH . 
I 5 HOH B 15 3747 3748 HOH HOH . 
I 5 HOH B 16 3748 3749 HOH HOH . 
I 5 HOH B 17 3749 3750 HOH HOH . 
I 5 HOH B 18 3750 3751 HOH HOH . 
I 5 HOH B 19 3751 3752 HOH HOH . 
I 5 HOH B 20 3752 3753 HOH HOH . 
I 5 HOH B 21 3753 3754 HOH HOH . 
I 5 HOH B 22 3754 3755 HOH HOH . 
I 5 HOH B 23 3755 3756 HOH HOH . 
I 5 HOH B 24 3756 3757 HOH HOH . 
I 5 HOH B 25 3757 3758 HOH HOH . 
I 5 HOH B 26 3758 3759 HOH HOH . 
I 5 HOH B 27 3759 3760 HOH HOH . 
I 5 HOH B 28 3760 3761 HOH HOH . 
I 5 HOH B 29 3761 3762 HOH HOH . 
I 5 HOH B 30 3762 3763 HOH HOH . 
I 5 HOH B 31 3763 3764 HOH HOH . 
I 5 HOH B 32 3764 3765 HOH HOH . 
I 5 HOH B 33 3765 3766 HOH HOH . 
I 5 HOH B 34 3766 3767 HOH HOH . 
I 5 HOH B 35 3767 3768 HOH HOH . 
I 5 HOH B 36 3768 3769 HOH HOH . 
I 5 HOH B 37 3769 3770 HOH HOH . 
I 5 HOH B 38 3770 3771 HOH HOH . 
I 5 HOH B 39 3771 3772 HOH HOH . 
I 5 HOH B 40 3772 3773 HOH HOH . 
I 5 HOH B 41 3773 3774 HOH HOH . 
I 5 HOH B 42 3774 3775 HOH HOH . 
I 5 HOH B 43 3775 3776 HOH HOH . 
I 5 HOH B 44 3776 3777 HOH HOH . 
I 5 HOH B 45 3777 3778 HOH HOH . 
I 5 HOH B 46 3778 3779 HOH HOH . 
I 5 HOH B 47 3779 3780 HOH HOH . 
I 5 HOH B 48 3780 3782 HOH HOH . 
J 5 HOH C 1 3865 3865 HOH HOH . 
J 5 HOH C 2 3866 10 HOH HOH . 
J 5 HOH C 3 3867 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -10.89 -5.387 17.988 1 89.59 ? C1 GOL 3732 B 1 
HETATM 2 O O1 GOL . . . G 4 -10.746 -6.348 19.032 1 89.47 ? O1 GOL 3732 B 1 
HETATM 3 C C2 GOL . . . G 4 -10.447 -4.018 18.499 1 89.62 ? C2 GOL 3732 B 1 
HETATM 4 O O2 GOL . . . G 4 -9.879 -3.282 17.434 1 89.67 ? O2 GOL 3732 B 1 
HETATM 5 C C3 GOL . . . G 4 -11.655 -3.264 19.055 1 89.45 ? C3 GOL 3732 B 1 
HETATM 6 O O3 GOL . . . G 4 -11.245 -2.014 19.575 1 89.06 ? O3 GOL 3732 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#