data_2RFX # _model_server_result.job_id 4CWKE2JrwwWlmQm1qLeNuw _model_server_result.datetime_utc '2024-11-22 07:01:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3732}' # _entry.id 2RFX # _exptl.entry_id 2RFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.7 _cell.angle_gamma 90 _cell.entry_id 2RFX _cell.length_a 64.844 _cell.length_b 49.029 _cell.length_c 70.666 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2RFX _atom_sites.fract_transf_matrix[1][1] 0.015422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002914 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 3731 3731 GOL GOL . E 4 GOL A 1 3732 3732 GOL GOL . F 4 GOL B 1 3731 3731 GOL GOL . G 4 GOL B 1 3732 3732 GOL GOL . H 5 HOH A 1 3733 3733 HOH HOH . H 5 HOH A 2 3734 3734 HOH HOH . H 5 HOH A 3 3735 3735 HOH HOH . H 5 HOH A 4 3736 3736 HOH HOH . H 5 HOH A 5 3737 3737 HOH HOH . H 5 HOH A 6 3738 3738 HOH HOH . H 5 HOH A 7 3739 3739 HOH HOH . H 5 HOH A 8 3740 3740 HOH HOH . H 5 HOH A 9 3741 3741 HOH HOH . H 5 HOH A 10 3742 3742 HOH HOH . H 5 HOH A 11 3743 3743 HOH HOH . H 5 HOH A 12 3744 3744 HOH HOH . H 5 HOH A 13 3745 3745 HOH HOH . H 5 HOH A 14 3746 3746 HOH HOH . H 5 HOH A 15 3747 3747 HOH HOH . H 5 HOH A 16 3748 3748 HOH HOH . H 5 HOH A 17 3749 3749 HOH HOH . H 5 HOH A 18 3750 3750 HOH HOH . H 5 HOH A 19 3751 3751 HOH HOH . H 5 HOH A 20 3752 3752 HOH HOH . H 5 HOH A 21 3753 3753 HOH HOH . H 5 HOH A 22 3754 3754 HOH HOH . H 5 HOH A 23 3755 3755 HOH HOH . H 5 HOH A 24 3756 3756 HOH HOH . H 5 HOH A 25 3757 3757 HOH HOH . H 5 HOH A 26 3758 3758 HOH HOH . H 5 HOH A 27 3759 3759 HOH HOH . H 5 HOH A 28 3760 3760 HOH HOH . H 5 HOH A 29 3761 3761 HOH HOH . H 5 HOH A 30 3762 3762 HOH HOH . H 5 HOH A 31 3763 3763 HOH HOH . H 5 HOH A 32 3764 3764 HOH HOH . H 5 HOH A 33 3765 3765 HOH HOH . H 5 HOH A 34 3766 3766 HOH HOH . H 5 HOH A 35 3767 3767 HOH HOH . H 5 HOH A 36 3768 3768 HOH HOH . H 5 HOH A 37 3769 3769 HOH HOH . H 5 HOH A 38 3770 3770 HOH HOH . H 5 HOH A 39 3771 3771 HOH HOH . H 5 HOH A 40 3772 3772 HOH HOH . H 5 HOH A 41 3773 3773 HOH HOH . H 5 HOH A 42 3774 3774 HOH HOH . H 5 HOH A 43 3775 3775 HOH HOH . H 5 HOH A 44 3776 3776 HOH HOH . H 5 HOH A 45 3777 3777 HOH HOH . H 5 HOH A 46 3778 3778 HOH HOH . H 5 HOH A 47 3779 3779 HOH HOH . H 5 HOH A 48 3780 3780 HOH HOH . H 5 HOH A 49 3781 3781 HOH HOH . H 5 HOH A 50 3782 3782 HOH HOH . H 5 HOH A 51 3783 3783 HOH HOH . H 5 HOH A 52 3784 3784 HOH HOH . H 5 HOH A 53 3785 3785 HOH HOH . H 5 HOH A 54 3786 3786 HOH HOH . H 5 HOH A 55 3787 3787 HOH HOH . H 5 HOH A 56 3788 3788 HOH HOH . H 5 HOH A 57 3789 3789 HOH HOH . H 5 HOH A 58 3790 3790 HOH HOH . H 5 HOH A 59 3791 3791 HOH HOH . H 5 HOH A 60 3792 3792 HOH HOH . H 5 HOH A 61 3793 3793 HOH HOH . H 5 HOH A 62 3794 3794 HOH HOH . H 5 HOH A 63 3795 3795 HOH HOH . H 5 HOH A 64 3796 3796 HOH HOH . H 5 HOH A 65 3797 3797 HOH HOH . H 5 HOH A 66 3798 3798 HOH HOH . H 5 HOH A 67 3799 3799 HOH HOH . H 5 HOH A 68 3800 3800 HOH HOH . H 5 HOH A 69 3801 3801 HOH HOH . H 5 HOH A 70 3802 3802 HOH HOH . H 5 HOH A 71 3803 3803 HOH HOH . H 5 HOH A 72 3804 3804 HOH HOH . H 5 HOH A 73 3805 3805 HOH HOH . H 5 HOH A 74 3806 3806 HOH HOH . H 5 HOH A 75 3807 3807 HOH HOH . H 5 HOH A 76 3808 3808 HOH HOH . H 5 HOH A 77 3809 3809 HOH HOH . H 5 HOH A 78 3810 3810 HOH HOH . H 5 HOH A 79 3811 3811 HOH HOH . H 5 HOH A 80 3812 3812 HOH HOH . H 5 HOH A 81 3813 3813 HOH HOH . H 5 HOH A 82 3814 3814 HOH HOH . H 5 HOH A 83 3815 3815 HOH HOH . H 5 HOH A 84 3816 3816 HOH HOH . H 5 HOH A 85 3817 3817 HOH HOH . H 5 HOH A 86 3818 3818 HOH HOH . H 5 HOH A 87 3819 3819 HOH HOH . H 5 HOH A 88 3820 3820 HOH HOH . H 5 HOH A 89 3821 3821 HOH HOH . H 5 HOH A 90 3822 3822 HOH HOH . H 5 HOH A 91 3823 3823 HOH HOH . H 5 HOH A 92 3824 3824 HOH HOH . H 5 HOH A 93 3825 3825 HOH HOH . H 5 HOH A 94 3826 3826 HOH HOH . H 5 HOH A 95 3827 3827 HOH HOH . H 5 HOH A 96 3828 3828 HOH HOH . H 5 HOH A 97 3829 3829 HOH HOH . H 5 HOH A 98 3830 3830 HOH HOH . H 5 HOH A 99 3831 3831 HOH HOH . H 5 HOH A 100 3832 3832 HOH HOH . H 5 HOH A 101 3833 3833 HOH HOH . H 5 HOH A 102 3834 3834 HOH HOH . H 5 HOH A 103 3835 3835 HOH HOH . H 5 HOH A 104 3836 3836 HOH HOH . H 5 HOH A 105 3837 3837 HOH HOH . H 5 HOH A 106 3838 3838 HOH HOH . H 5 HOH A 107 3839 3839 HOH HOH . H 5 HOH A 108 3840 3840 HOH HOH . H 5 HOH A 109 3841 3841 HOH HOH . H 5 HOH A 110 3842 3842 HOH HOH . H 5 HOH A 111 3843 3843 HOH HOH . H 5 HOH A 112 3844 3844 HOH HOH . H 5 HOH A 113 3845 3845 HOH HOH . H 5 HOH A 114 3846 3846 HOH HOH . H 5 HOH A 115 3847 3847 HOH HOH . H 5 HOH A 116 3848 3848 HOH HOH . H 5 HOH A 117 3849 3849 HOH HOH . H 5 HOH A 118 3850 3850 HOH HOH . H 5 HOH A 119 3851 3851 HOH HOH . H 5 HOH A 120 3852 3852 HOH HOH . H 5 HOH A 121 3853 3853 HOH HOH . H 5 HOH A 122 3854 3854 HOH HOH . H 5 HOH A 123 3855 3855 HOH HOH . H 5 HOH A 124 3856 3856 HOH HOH . H 5 HOH A 125 3857 3857 HOH HOH . H 5 HOH A 126 3858 3858 HOH HOH . H 5 HOH A 127 3859 3859 HOH HOH . H 5 HOH A 128 3860 3860 HOH HOH . H 5 HOH A 129 3861 3861 HOH HOH . H 5 HOH A 130 3862 3862 HOH HOH . H 5 HOH A 131 3863 3863 HOH HOH . H 5 HOH A 132 3864 3864 HOH HOH . H 5 HOH A 133 3865 3740 HOH HOH . H 5 HOH A 134 3866 3781 HOH HOH . I 5 HOH B 1 3733 3733 HOH HOH . I 5 HOH B 2 3734 3734 HOH HOH . I 5 HOH B 3 3735 3735 HOH HOH . I 5 HOH B 4 3736 3736 HOH HOH . I 5 HOH B 5 3737 3737 HOH HOH . I 5 HOH B 6 3738 3738 HOH HOH . I 5 HOH B 7 3739 3739 HOH HOH . I 5 HOH B 8 3740 3741 HOH HOH . I 5 HOH B 9 3741 3742 HOH HOH . I 5 HOH B 10 3742 3743 HOH HOH . I 5 HOH B 11 3743 3744 HOH HOH . I 5 HOH B 12 3744 3745 HOH HOH . I 5 HOH B 13 3745 3746 HOH HOH . I 5 HOH B 14 3746 3747 HOH HOH . I 5 HOH B 15 3747 3748 HOH HOH . I 5 HOH B 16 3748 3749 HOH HOH . I 5 HOH B 17 3749 3750 HOH HOH . I 5 HOH B 18 3750 3751 HOH HOH . I 5 HOH B 19 3751 3752 HOH HOH . I 5 HOH B 20 3752 3753 HOH HOH . I 5 HOH B 21 3753 3754 HOH HOH . I 5 HOH B 22 3754 3755 HOH HOH . I 5 HOH B 23 3755 3756 HOH HOH . I 5 HOH B 24 3756 3757 HOH HOH . I 5 HOH B 25 3757 3758 HOH HOH . I 5 HOH B 26 3758 3759 HOH HOH . I 5 HOH B 27 3759 3760 HOH HOH . I 5 HOH B 28 3760 3761 HOH HOH . I 5 HOH B 29 3761 3762 HOH HOH . I 5 HOH B 30 3762 3763 HOH HOH . I 5 HOH B 31 3763 3764 HOH HOH . I 5 HOH B 32 3764 3765 HOH HOH . I 5 HOH B 33 3765 3766 HOH HOH . I 5 HOH B 34 3766 3767 HOH HOH . I 5 HOH B 35 3767 3768 HOH HOH . I 5 HOH B 36 3768 3769 HOH HOH . I 5 HOH B 37 3769 3770 HOH HOH . I 5 HOH B 38 3770 3771 HOH HOH . I 5 HOH B 39 3771 3772 HOH HOH . I 5 HOH B 40 3772 3773 HOH HOH . I 5 HOH B 41 3773 3774 HOH HOH . I 5 HOH B 42 3774 3775 HOH HOH . I 5 HOH B 43 3775 3776 HOH HOH . I 5 HOH B 44 3776 3777 HOH HOH . I 5 HOH B 45 3777 3778 HOH HOH . I 5 HOH B 46 3778 3779 HOH HOH . I 5 HOH B 47 3779 3780 HOH HOH . I 5 HOH B 48 3780 3782 HOH HOH . J 5 HOH C 1 3865 3865 HOH HOH . J 5 HOH C 2 3866 10 HOH HOH . J 5 HOH C 3 3867 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -10.89 -5.387 17.988 1 89.59 ? C1 GOL 3732 B 1 HETATM 2 O O1 GOL . . . G 4 -10.746 -6.348 19.032 1 89.47 ? O1 GOL 3732 B 1 HETATM 3 C C2 GOL . . . G 4 -10.447 -4.018 18.499 1 89.62 ? C2 GOL 3732 B 1 HETATM 4 O O2 GOL . . . G 4 -9.879 -3.282 17.434 1 89.67 ? O2 GOL 3732 B 1 HETATM 5 C C3 GOL . . . G 4 -11.655 -3.264 19.055 1 89.45 ? C3 GOL 3732 B 1 HETATM 6 O O3 GOL . . . G 4 -11.245 -2.014 19.575 1 89.06 ? O3 GOL 3732 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #