data_2RG3 # _model_server_result.job_id 0JCITEn4MFO9hesNCH1KaQ _model_server_result.datetime_utc '2024-11-15 08:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":404}' # _entry.id 2RG3 # _exptl.entry_id 2RG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RG3 _cell.length_a 73.2 _cell.length_b 73.2 _cell.length_c 70.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 401 NAG 2 n B NAG 2 B 2 NAG A 403 NAG 2 n B FUC 3 B 3 FUC A 402 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 179 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 158 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 169 A CYS 191 1_555 A SG CYS 194 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 144 A ASN 159 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A C ASP 172 A ASP 194 1_555 A N BG1 173 A BG1 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C BG1 173 A BG1 195 1_555 A N GLY 174 A GLY 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # _atom_sites.entry_id 2RG3 _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0.007887 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE A 1 404 404 EPE EPE . D 4 HOH A 1 405 405 HOH HOH . D 4 HOH A 2 406 406 HOH HOH . D 4 HOH A 3 407 407 HOH HOH . D 4 HOH A 4 408 408 HOH HOH . D 4 HOH A 5 409 409 HOH HOH . D 4 HOH A 6 410 410 HOH HOH . D 4 HOH A 7 411 411 HOH HOH . D 4 HOH A 8 412 412 HOH HOH . D 4 HOH A 9 413 413 HOH HOH . D 4 HOH A 10 414 414 HOH HOH . D 4 HOH A 11 415 415 HOH HOH . D 4 HOH A 12 416 416 HOH HOH . D 4 HOH A 13 417 417 HOH HOH . D 4 HOH A 14 418 418 HOH HOH . D 4 HOH A 15 419 419 HOH HOH . D 4 HOH A 16 420 420 HOH HOH . D 4 HOH A 17 421 421 HOH HOH . D 4 HOH A 18 422 422 HOH HOH . D 4 HOH A 19 423 423 HOH HOH . D 4 HOH A 20 424 424 HOH HOH . D 4 HOH A 21 425 425 HOH HOH . D 4 HOH A 22 426 426 HOH HOH . D 4 HOH A 23 427 427 HOH HOH . D 4 HOH A 24 428 428 HOH HOH . D 4 HOH A 25 429 429 HOH HOH . D 4 HOH A 26 430 430 HOH HOH . D 4 HOH A 27 431 431 HOH HOH . D 4 HOH A 28 432 432 HOH HOH . D 4 HOH A 29 433 433 HOH HOH . D 4 HOH A 30 434 434 HOH HOH . D 4 HOH A 31 435 435 HOH HOH . D 4 HOH A 32 436 436 HOH HOH . D 4 HOH A 33 437 437 HOH HOH . D 4 HOH A 34 438 438 HOH HOH . D 4 HOH A 35 439 439 HOH HOH . D 4 HOH A 36 440 440 HOH HOH . D 4 HOH A 37 441 441 HOH HOH . D 4 HOH A 38 442 442 HOH HOH . D 4 HOH A 39 443 443 HOH HOH . D 4 HOH A 40 444 444 HOH HOH . D 4 HOH A 41 445 445 HOH HOH . D 4 HOH A 42 446 446 HOH HOH . D 4 HOH A 43 447 447 HOH HOH . D 4 HOH A 44 448 448 HOH HOH . D 4 HOH A 45 449 449 HOH HOH . D 4 HOH A 46 450 450 HOH HOH . D 4 HOH A 47 451 451 HOH HOH . D 4 HOH A 48 452 452 HOH HOH . D 4 HOH A 49 453 453 HOH HOH . D 4 HOH A 50 454 454 HOH HOH . D 4 HOH A 51 455 455 HOH HOH . D 4 HOH A 52 456 456 HOH HOH . D 4 HOH A 53 457 457 HOH HOH . D 4 HOH A 54 458 458 HOH HOH . D 4 HOH A 55 459 459 HOH HOH . D 4 HOH A 56 460 460 HOH HOH . D 4 HOH A 57 461 461 HOH HOH . D 4 HOH A 58 462 462 HOH HOH . D 4 HOH A 59 463 463 HOH HOH . D 4 HOH A 60 464 464 HOH HOH . D 4 HOH A 61 465 465 HOH HOH . D 4 HOH A 62 466 466 HOH HOH . D 4 HOH A 63 467 467 HOH HOH . D 4 HOH A 64 468 468 HOH HOH . D 4 HOH A 65 469 469 HOH HOH . D 4 HOH A 66 470 470 HOH HOH . D 4 HOH A 67 471 471 HOH HOH . D 4 HOH A 68 472 472 HOH HOH . D 4 HOH A 69 473 473 HOH HOH . D 4 HOH A 70 474 474 HOH HOH . D 4 HOH A 71 475 475 HOH HOH . D 4 HOH A 72 476 476 HOH HOH . D 4 HOH A 73 477 477 HOH HOH . D 4 HOH A 74 478 478 HOH HOH . D 4 HOH A 75 479 479 HOH HOH . D 4 HOH A 76 480 480 HOH HOH . D 4 HOH A 77 481 481 HOH HOH . D 4 HOH A 78 482 482 HOH HOH . D 4 HOH A 79 483 483 HOH HOH . D 4 HOH A 80 484 484 HOH HOH . D 4 HOH A 81 485 485 HOH HOH . D 4 HOH A 82 486 486 HOH HOH . D 4 HOH A 83 487 487 HOH HOH . D 4 HOH A 84 488 488 HOH HOH . D 4 HOH A 85 489 489 HOH HOH . D 4 HOH A 86 490 490 HOH HOH . D 4 HOH A 87 491 491 HOH HOH . D 4 HOH A 88 492 492 HOH HOH . D 4 HOH A 89 493 493 HOH HOH . D 4 HOH A 90 494 494 HOH HOH . D 4 HOH A 91 495 495 HOH HOH . D 4 HOH A 92 496 496 HOH HOH . D 4 HOH A 93 497 497 HOH HOH . D 4 HOH A 94 498 498 HOH HOH . D 4 HOH A 95 499 499 HOH HOH . D 4 HOH A 96 500 500 HOH HOH . D 4 HOH A 97 501 501 HOH HOH . D 4 HOH A 98 502 502 HOH HOH . D 4 HOH A 99 503 503 HOH HOH . D 4 HOH A 100 504 504 HOH HOH . D 4 HOH A 101 505 505 HOH HOH . D 4 HOH A 102 506 506 HOH HOH . D 4 HOH A 103 507 507 HOH HOH . D 4 HOH A 104 508 508 HOH HOH . D 4 HOH A 105 509 509 HOH HOH . D 4 HOH A 106 510 510 HOH HOH . D 4 HOH A 107 511 511 HOH HOH . D 4 HOH A 108 512 512 HOH HOH . D 4 HOH A 109 513 513 HOH HOH . D 4 HOH A 110 514 514 HOH HOH . D 4 HOH A 111 515 515 HOH HOH . D 4 HOH A 112 516 516 HOH HOH . D 4 HOH A 113 517 517 HOH HOH . D 4 HOH A 114 518 518 HOH HOH . D 4 HOH A 115 519 519 HOH HOH . D 4 HOH A 116 520 520 HOH HOH . D 4 HOH A 117 521 521 HOH HOH . D 4 HOH A 118 522 522 HOH HOH . D 4 HOH A 119 523 523 HOH HOH . D 4 HOH A 120 524 524 HOH HOH . D 4 HOH A 121 525 525 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 27.736 -18.508 -0.527 1 34.43 ? N1 EPE 404 A 1 HETATM 2 C C2 EPE . . . C 3 28.812 -17.764 0.182 1 35.81 ? C2 EPE 404 A 1 HETATM 3 C C3 EPE . . . C 3 30.136 -17.884 -0.609 1 37.57 ? C3 EPE 404 A 1 HETATM 4 N N4 EPE . . . C 3 29.957 -17.384 -1.999 1 37.75 ? N4 EPE 404 A 1 HETATM 5 C C5 EPE . . . C 3 28.905 -18.207 -2.662 1 36.8 ? C5 EPE 404 A 1 HETATM 6 C C6 EPE . . . C 3 27.576 -18.016 -1.911 1 35.54 ? C6 EPE 404 A 1 HETATM 7 C C7 EPE . . . C 3 31.26 -17.547 -2.699 1 40.9 ? C7 EPE 404 A 1 HETATM 8 C C8 EPE . . . C 3 31.221 -17.058 -4.167 1 43.32 ? C8 EPE 404 A 1 HETATM 9 O O8 EPE . . . C 3 30.397 -15.892 -4.287 1 46.84 ? O8 EPE 404 A 1 HETATM 10 C C9 EPE . . . C 3 26.484 -18.363 0.278 1 31.64 ? C9 EPE 404 A 1 HETATM 11 C C10 EPE . . . C 3 25.279 -19.049 -0.399 1 27.68 ? C10 EPE 404 A 1 HETATM 12 S S EPE . . . C 3 23.809 -18.939 0.659 1 20.19 ? S EPE 404 A 1 HETATM 13 O O1S EPE . . . C 3 23.985 -19.777 1.786 1 24.19 ? O1S EPE 404 A 1 HETATM 14 O O2S EPE . . . C 3 23.454 -17.573 0.894 1 26.31 ? O2S EPE 404 A 1 HETATM 15 O O3S EPE . . . C 3 22.677 -19.58 -0.128 1 25.28 ? O3S EPE 404 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #