data_2RGD
#
_model_server_result.job_id            7RQt8UP04zZKUkaaeKMkFw 
_model_server_result.datetime_utc      '2024-11-02 18:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    2RGD 
#
_exptl.entry_id    2RGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2RGD 
_cell.length_a            88.953 
_cell.length_b            88.953 
_cell.length_c            134.022 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc2 A OE2 GLU 31 A GLU 31 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 A OD1 ASP 33 A ASP 33 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc4 A OD2 ASP 33 A ASP 33 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc5 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc6 E O2B GNP . A GNP 528 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc7 E O2G GNP . A GNP 528 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc8 B CA CA . A CA 601 1_555 F O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc9 B CA CA . A CA 601 1_555 F O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc10 C MG MG . A MG 602 1_555 F O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc11 C MG MG . A MG 602 1_555 F O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc12 D MG MG . A MG 603 1_555 F O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc13 D MG MG . A MG 603 1_555 F O HOH . A HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2RGD 
_atom_sites.fract_transf_matrix[1][1]    0.011242 
_atom_sites.fract_transf_matrix[1][2]    0.006491 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 601 1 CA CA . 
C 3 MG A 1 602 2 MG MG . 
D 3 MG A 1 603 3 MG MG . 
E 4 GNP A 1 528 528 GNP GNP . 
F 5 HOH A 1 604 4 HOH HOH . 
F 5 HOH A 2 605 5 HOH HOH . 
F 5 HOH A 3 606 6 HOH HOH . 
F 5 HOH A 4 607 7 HOH HOH . 
F 5 HOH A 5 608 8 HOH HOH . 
F 5 HOH A 6 609 9 HOH HOH . 
F 5 HOH A 7 610 10 HOH HOH . 
F 5 HOH A 8 611 11 HOH HOH . 
F 5 HOH A 9 612 12 HOH HOH . 
F 5 HOH A 10 613 13 HOH HOH . 
F 5 HOH A 11 614 14 HOH HOH . 
F 5 HOH A 12 615 16 HOH HOH . 
F 5 HOH A 13 616 17 HOH HOH . 
F 5 HOH A 14 617 18 HOH HOH . 
F 5 HOH A 15 618 20 HOH HOH . 
F 5 HOH A 16 619 21 HOH HOH . 
F 5 HOH A 17 620 22 HOH HOH . 
F 5 HOH A 18 621 23 HOH HOH . 
F 5 HOH A 19 622 24 HOH HOH . 
F 5 HOH A 20 623 25 HOH HOH . 
F 5 HOH A 21 624 27 HOH HOH . 
F 5 HOH A 22 625 28 HOH HOH . 
F 5 HOH A 23 626 29 HOH HOH . 
F 5 HOH A 24 627 31 HOH HOH . 
F 5 HOH A 25 628 32 HOH HOH . 
F 5 HOH A 26 629 35 HOH HOH . 
F 5 HOH A 27 630 36 HOH HOH . 
F 5 HOH A 28 631 37 HOH HOH . 
F 5 HOH A 29 632 38 HOH HOH . 
F 5 HOH A 30 633 39 HOH HOH . 
F 5 HOH A 31 634 41 HOH HOH . 
F 5 HOH A 32 635 42 HOH HOH . 
F 5 HOH A 33 636 43 HOH HOH . 
F 5 HOH A 34 637 45 HOH HOH . 
F 5 HOH A 35 638 46 HOH HOH . 
F 5 HOH A 36 639 47 HOH HOH . 
F 5 HOH A 37 640 49 HOH HOH . 
F 5 HOH A 38 641 50 HOH HOH . 
F 5 HOH A 39 642 53 HOH HOH . 
F 5 HOH A 40 643 54 HOH HOH . 
F 5 HOH A 41 644 57 HOH HOH . 
F 5 HOH A 42 645 58 HOH HOH . 
F 5 HOH A 43 646 59 HOH HOH . 
F 5 HOH A 44 647 61 HOH HOH . 
F 5 HOH A 45 648 62 HOH HOH . 
F 5 HOH A 46 649 63 HOH HOH . 
F 5 HOH A 47 650 64 HOH HOH . 
F 5 HOH A 48 651 66 HOH HOH . 
F 5 HOH A 49 652 68 HOH HOH . 
F 5 HOH A 50 653 70 HOH HOH . 
F 5 HOH A 51 654 72 HOH HOH . 
F 5 HOH A 52 655 73 HOH HOH . 
F 5 HOH A 53 656 75 HOH HOH . 
F 5 HOH A 54 657 76 HOH HOH . 
F 5 HOH A 55 658 82 HOH HOH . 
F 5 HOH A 56 659 83 HOH HOH . 
F 5 HOH A 57 660 86 HOH HOH . 
F 5 HOH A 58 661 88 HOH HOH . 
F 5 HOH A 59 662 89 HOH HOH . 
F 5 HOH A 60 663 90 HOH HOH . 
F 5 HOH A 61 664 91 HOH HOH . 
F 5 HOH A 62 665 92 HOH HOH . 
F 5 HOH A 63 666 95 HOH HOH . 
F 5 HOH A 64 667 98 HOH HOH . 
F 5 HOH A 65 668 99 HOH HOH . 
F 5 HOH A 66 669 106 HOH HOH . 
F 5 HOH A 67 670 108 HOH HOH . 
F 5 HOH A 68 671 109 HOH HOH . 
F 5 HOH A 69 672 114 HOH HOH . 
F 5 HOH A 70 673 115 HOH HOH . 
F 5 HOH A 71 674 116 HOH HOH . 
F 5 HOH A 72 675 117 HOH HOH . 
F 5 HOH A 73 676 119 HOH HOH . 
F 5 HOH A 74 677 120 HOH HOH . 
F 5 HOH A 75 678 123 HOH HOH . 
F 5 HOH A 76 679 125 HOH HOH . 
F 5 HOH A 77 680 126 HOH HOH . 
F 5 HOH A 78 681 128 HOH HOH . 
F 5 HOH A 79 682 134 HOH HOH . 
F 5 HOH A 80 683 135 HOH HOH . 
F 5 HOH A 81 684 136 HOH HOH . 
F 5 HOH A 82 685 137 HOH HOH . 
F 5 HOH A 83 686 139 HOH HOH . 
F 5 HOH A 84 687 140 HOH HOH . 
F 5 HOH A 85 688 141 HOH HOH . 
F 5 HOH A 86 689 145 HOH HOH . 
F 5 HOH A 87 690 146 HOH HOH . 
F 5 HOH A 88 691 147 HOH HOH . 
F 5 HOH A 89 692 152 HOH HOH . 
F 5 HOH A 90 693 158 HOH HOH . 
F 5 HOH A 91 694 159 HOH HOH . 
F 5 HOH A 92 695 161 HOH HOH . 
F 5 HOH A 93 696 162 HOH HOH . 
F 5 HOH A 94 697 163 HOH HOH . 
F 5 HOH A 95 698 165 HOH HOH . 
F 5 HOH A 96 699 166 HOH HOH . 
F 5 HOH A 97 700 169 HOH HOH . 
F 5 HOH A 98 701 172 HOH HOH . 
F 5 HOH A 99 702 174 HOH HOH . 
F 5 HOH A 100 703 176 HOH HOH . 
F 5 HOH A 101 704 178 HOH HOH . 
F 5 HOH A 102 705 179 HOH HOH . 
F 5 HOH A 103 706 180 HOH HOH . 
F 5 HOH A 104 707 181 HOH HOH . 
F 5 HOH A 105 708 182 HOH HOH . 
F 5 HOH A 106 709 183 HOH HOH . 
F 5 HOH A 107 710 184 HOH HOH . 
F 5 HOH A 108 711 190 HOH HOH . 
F 5 HOH A 109 712 191 HOH HOH . 
F 5 HOH A 110 713 197 HOH HOH . 
F 5 HOH A 111 714 200 HOH HOH . 
F 5 HOH A 112 715 202 HOH HOH . 
F 5 HOH A 113 716 206 HOH HOH . 
F 5 HOH A 114 717 207 HOH HOH . 
F 5 HOH A 115 718 209 HOH HOH . 
F 5 HOH A 116 719 215 HOH HOH . 
F 5 HOH A 117 720 216 HOH HOH . 
F 5 HOH A 118 721 218 HOH HOH . 
F 5 HOH A 119 722 220 HOH HOH . 
F 5 HOH A 120 723 221 HOH HOH . 
F 5 HOH A 121 724 223 HOH HOH . 
F 5 HOH A 122 725 224 HOH HOH . 
F 5 HOH A 123 726 225 HOH HOH . 
F 5 HOH A 124 727 227 HOH HOH . 
F 5 HOH A 125 728 229 HOH HOH . 
F 5 HOH A 126 729 232 HOH HOH . 
F 5 HOH A 127 730 233 HOH HOH . 
F 5 HOH A 128 731 235 HOH HOH . 
F 5 HOH A 129 732 236 HOH HOH . 
F 5 HOH A 130 733 242 HOH HOH . 
F 5 HOH A 131 734 245 HOH HOH . 
F 5 HOH A 132 735 252 HOH HOH . 
F 5 HOH A 133 736 253 HOH HOH . 
F 5 HOH A 134 737 254 HOH HOH . 
F 5 HOH A 135 738 255 HOH HOH . 
F 5 HOH A 136 739 256 HOH HOH . 
F 5 HOH A 137 740 257 HOH HOH . 
F 5 HOH A 138 741 258 HOH HOH . 
F 5 HOH A 139 742 259 HOH HOH . 
F 5 HOH A 140 743 260 HOH HOH . 
F 5 HOH A 141 744 261 HOH HOH . 
F 5 HOH A 142 745 262 HOH HOH . 
F 5 HOH A 143 746 263 HOH HOH . 
F 5 HOH A 144 747 264 HOH HOH . 
F 5 HOH A 145 748 265 HOH HOH . 
F 5 HOH A 146 749 266 HOH HOH . 
F 5 HOH A 147 750 267 HOH HOH . 
F 5 HOH A 148 751 268 HOH HOH . 
F 5 HOH A 149 752 269 HOH HOH . 
F 5 HOH A 150 753 270 HOH HOH . 
F 5 HOH A 151 754 271 HOH HOH . 
F 5 HOH A 152 755 272 HOH HOH . 
F 5 HOH A 153 756 273 HOH HOH . 
F 5 HOH A 154 757 274 HOH HOH . 
F 5 HOH A 155 758 275 HOH HOH . 
F 5 HOH A 156 759 276 HOH HOH . 
F 5 HOH A 157 760 277 HOH HOH . 
F 5 HOH A 158 761 278 HOH HOH . 
F 5 HOH A 159 762 279 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -4.773 
_atom_site.Cartn_y               74.804 
_atom_site.Cartn_z               -61.962 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#