data_2RGD # _model_server_result.job_id V69hOjAFs2duGVltHu4N1g _model_server_result.datetime_utc '2024-11-02 18:15:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 2RGD # _exptl.entry_id 2RGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RGD _cell.length_a 88.953 _cell.length_b 88.953 _cell.length_c 134.022 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A OE2 GLU 31 A GLU 31 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A OD1 ASP 33 A ASP 33 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc4 A OD2 ASP 33 A ASP 33 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc6 E O2B GNP . A GNP 528 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 E O2G GNP . A GNP 528 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 B CA CA . A CA 601 1_555 F O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc9 B CA CA . A CA 601 1_555 F O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc10 C MG MG . A MG 602 1_555 F O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc11 C MG MG . A MG 602 1_555 F O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc12 D MG MG . A MG 603 1_555 F O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc13 D MG MG . A MG 603 1_555 F O HOH . A HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2RGD _atom_sites.fract_transf_matrix[1][1] 0.011242 _atom_sites.fract_transf_matrix[1][2] 0.006491 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 601 1 CA CA . C 3 MG A 1 602 2 MG MG . D 3 MG A 1 603 3 MG MG . E 4 GNP A 1 528 528 GNP GNP . F 5 HOH A 1 604 4 HOH HOH . F 5 HOH A 2 605 5 HOH HOH . F 5 HOH A 3 606 6 HOH HOH . F 5 HOH A 4 607 7 HOH HOH . F 5 HOH A 5 608 8 HOH HOH . F 5 HOH A 6 609 9 HOH HOH . F 5 HOH A 7 610 10 HOH HOH . F 5 HOH A 8 611 11 HOH HOH . F 5 HOH A 9 612 12 HOH HOH . F 5 HOH A 10 613 13 HOH HOH . F 5 HOH A 11 614 14 HOH HOH . F 5 HOH A 12 615 16 HOH HOH . F 5 HOH A 13 616 17 HOH HOH . F 5 HOH A 14 617 18 HOH HOH . F 5 HOH A 15 618 20 HOH HOH . F 5 HOH A 16 619 21 HOH HOH . F 5 HOH A 17 620 22 HOH HOH . F 5 HOH A 18 621 23 HOH HOH . F 5 HOH A 19 622 24 HOH HOH . F 5 HOH A 20 623 25 HOH HOH . F 5 HOH A 21 624 27 HOH HOH . F 5 HOH A 22 625 28 HOH HOH . F 5 HOH A 23 626 29 HOH HOH . F 5 HOH A 24 627 31 HOH HOH . F 5 HOH A 25 628 32 HOH HOH . F 5 HOH A 26 629 35 HOH HOH . F 5 HOH A 27 630 36 HOH HOH . F 5 HOH A 28 631 37 HOH HOH . F 5 HOH A 29 632 38 HOH HOH . F 5 HOH A 30 633 39 HOH HOH . F 5 HOH A 31 634 41 HOH HOH . F 5 HOH A 32 635 42 HOH HOH . F 5 HOH A 33 636 43 HOH HOH . F 5 HOH A 34 637 45 HOH HOH . F 5 HOH A 35 638 46 HOH HOH . F 5 HOH A 36 639 47 HOH HOH . F 5 HOH A 37 640 49 HOH HOH . F 5 HOH A 38 641 50 HOH HOH . F 5 HOH A 39 642 53 HOH HOH . F 5 HOH A 40 643 54 HOH HOH . F 5 HOH A 41 644 57 HOH HOH . F 5 HOH A 42 645 58 HOH HOH . F 5 HOH A 43 646 59 HOH HOH . F 5 HOH A 44 647 61 HOH HOH . F 5 HOH A 45 648 62 HOH HOH . F 5 HOH A 46 649 63 HOH HOH . F 5 HOH A 47 650 64 HOH HOH . F 5 HOH A 48 651 66 HOH HOH . F 5 HOH A 49 652 68 HOH HOH . F 5 HOH A 50 653 70 HOH HOH . F 5 HOH A 51 654 72 HOH HOH . F 5 HOH A 52 655 73 HOH HOH . F 5 HOH A 53 656 75 HOH HOH . F 5 HOH A 54 657 76 HOH HOH . F 5 HOH A 55 658 82 HOH HOH . F 5 HOH A 56 659 83 HOH HOH . F 5 HOH A 57 660 86 HOH HOH . F 5 HOH A 58 661 88 HOH HOH . F 5 HOH A 59 662 89 HOH HOH . F 5 HOH A 60 663 90 HOH HOH . F 5 HOH A 61 664 91 HOH HOH . F 5 HOH A 62 665 92 HOH HOH . F 5 HOH A 63 666 95 HOH HOH . F 5 HOH A 64 667 98 HOH HOH . F 5 HOH A 65 668 99 HOH HOH . F 5 HOH A 66 669 106 HOH HOH . F 5 HOH A 67 670 108 HOH HOH . F 5 HOH A 68 671 109 HOH HOH . F 5 HOH A 69 672 114 HOH HOH . F 5 HOH A 70 673 115 HOH HOH . F 5 HOH A 71 674 116 HOH HOH . F 5 HOH A 72 675 117 HOH HOH . F 5 HOH A 73 676 119 HOH HOH . F 5 HOH A 74 677 120 HOH HOH . F 5 HOH A 75 678 123 HOH HOH . F 5 HOH A 76 679 125 HOH HOH . F 5 HOH A 77 680 126 HOH HOH . F 5 HOH A 78 681 128 HOH HOH . F 5 HOH A 79 682 134 HOH HOH . F 5 HOH A 80 683 135 HOH HOH . F 5 HOH A 81 684 136 HOH HOH . F 5 HOH A 82 685 137 HOH HOH . F 5 HOH A 83 686 139 HOH HOH . F 5 HOH A 84 687 140 HOH HOH . F 5 HOH A 85 688 141 HOH HOH . F 5 HOH A 86 689 145 HOH HOH . F 5 HOH A 87 690 146 HOH HOH . F 5 HOH A 88 691 147 HOH HOH . F 5 HOH A 89 692 152 HOH HOH . F 5 HOH A 90 693 158 HOH HOH . F 5 HOH A 91 694 159 HOH HOH . F 5 HOH A 92 695 161 HOH HOH . F 5 HOH A 93 696 162 HOH HOH . F 5 HOH A 94 697 163 HOH HOH . F 5 HOH A 95 698 165 HOH HOH . F 5 HOH A 96 699 166 HOH HOH . F 5 HOH A 97 700 169 HOH HOH . F 5 HOH A 98 701 172 HOH HOH . F 5 HOH A 99 702 174 HOH HOH . F 5 HOH A 100 703 176 HOH HOH . F 5 HOH A 101 704 178 HOH HOH . F 5 HOH A 102 705 179 HOH HOH . F 5 HOH A 103 706 180 HOH HOH . F 5 HOH A 104 707 181 HOH HOH . F 5 HOH A 105 708 182 HOH HOH . F 5 HOH A 106 709 183 HOH HOH . F 5 HOH A 107 710 184 HOH HOH . F 5 HOH A 108 711 190 HOH HOH . F 5 HOH A 109 712 191 HOH HOH . F 5 HOH A 110 713 197 HOH HOH . F 5 HOH A 111 714 200 HOH HOH . F 5 HOH A 112 715 202 HOH HOH . F 5 HOH A 113 716 206 HOH HOH . F 5 HOH A 114 717 207 HOH HOH . F 5 HOH A 115 718 209 HOH HOH . F 5 HOH A 116 719 215 HOH HOH . F 5 HOH A 117 720 216 HOH HOH . F 5 HOH A 118 721 218 HOH HOH . F 5 HOH A 119 722 220 HOH HOH . F 5 HOH A 120 723 221 HOH HOH . F 5 HOH A 121 724 223 HOH HOH . F 5 HOH A 122 725 224 HOH HOH . F 5 HOH A 123 726 225 HOH HOH . F 5 HOH A 124 727 227 HOH HOH . F 5 HOH A 125 728 229 HOH HOH . F 5 HOH A 126 729 232 HOH HOH . F 5 HOH A 127 730 233 HOH HOH . F 5 HOH A 128 731 235 HOH HOH . F 5 HOH A 129 732 236 HOH HOH . F 5 HOH A 130 733 242 HOH HOH . F 5 HOH A 131 734 245 HOH HOH . F 5 HOH A 132 735 252 HOH HOH . F 5 HOH A 133 736 253 HOH HOH . F 5 HOH A 134 737 254 HOH HOH . F 5 HOH A 135 738 255 HOH HOH . F 5 HOH A 136 739 256 HOH HOH . F 5 HOH A 137 740 257 HOH HOH . F 5 HOH A 138 741 258 HOH HOH . F 5 HOH A 139 742 259 HOH HOH . F 5 HOH A 140 743 260 HOH HOH . F 5 HOH A 141 744 261 HOH HOH . F 5 HOH A 142 745 262 HOH HOH . F 5 HOH A 143 746 263 HOH HOH . F 5 HOH A 144 747 264 HOH HOH . F 5 HOH A 145 748 265 HOH HOH . F 5 HOH A 146 749 266 HOH HOH . F 5 HOH A 147 750 267 HOH HOH . F 5 HOH A 148 751 268 HOH HOH . F 5 HOH A 149 752 269 HOH HOH . F 5 HOH A 150 753 270 HOH HOH . F 5 HOH A 151 754 271 HOH HOH . F 5 HOH A 152 755 272 HOH HOH . F 5 HOH A 153 756 273 HOH HOH . F 5 HOH A 154 757 274 HOH HOH . F 5 HOH A 155 758 275 HOH HOH . F 5 HOH A 156 759 276 HOH HOH . F 5 HOH A 157 760 277 HOH HOH . F 5 HOH A 158 761 278 HOH HOH . F 5 HOH A 159 762 279 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.01 _atom_site.Cartn_y 51.339 _atom_site.Cartn_z -85.01 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 18.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #