data_2RGG
#
_model_server_result.job_id            npg-Jibn17hCoqch1Id3RQ 
_model_server_result.datetime_utc      '2024-11-24 08:01:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rgg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":528}' 
#
_entry.id    2RGG 
#
_exptl.entry_id    2RGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2RGG 
_cell.length_a            39.688 
_cell.length_b            39.688 
_cell.length_c            159.015 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc3 C O2G GNP . A GNP 528 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc4 C O2B GNP . A GNP 528 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc5 B MG MG . A MG 601 1_555 D O HOH . A HOH 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc6 B MG MG . A MG 601 1_555 D O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     2RGG 
_atom_sites.fract_transf_matrix[1][1]    0.025197 
_atom_sites.fract_transf_matrix[1][2]    0.014547 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 601 1 MG MG . 
C 3 GNP A 1 528 528 GNP GNP . 
D 4 HOH A 1 602 529 HOH HOH . 
D 4 HOH A 2 603 530 HOH HOH . 
D 4 HOH A 3 604 531 HOH HOH . 
D 4 HOH A 4 605 532 HOH HOH . 
D 4 HOH A 5 606 533 HOH HOH . 
D 4 HOH A 6 607 534 HOH HOH . 
D 4 HOH A 7 608 536 HOH HOH . 
D 4 HOH A 8 609 537 HOH HOH . 
D 4 HOH A 9 610 538 HOH HOH . 
D 4 HOH A 10 611 539 HOH HOH . 
D 4 HOH A 11 612 540 HOH HOH . 
D 4 HOH A 12 613 541 HOH HOH . 
D 4 HOH A 13 614 542 HOH HOH . 
D 4 HOH A 14 615 543 HOH HOH . 
D 4 HOH A 15 616 544 HOH HOH . 
D 4 HOH A 16 617 545 HOH HOH . 
D 4 HOH A 17 618 546 HOH HOH . 
D 4 HOH A 18 619 547 HOH HOH . 
D 4 HOH A 19 620 548 HOH HOH . 
D 4 HOH A 20 621 549 HOH HOH . 
D 4 HOH A 21 622 550 HOH HOH . 
D 4 HOH A 22 623 551 HOH HOH . 
D 4 HOH A 23 624 552 HOH HOH . 
D 4 HOH A 24 625 553 HOH HOH . 
D 4 HOH A 25 626 554 HOH HOH . 
D 4 HOH A 26 627 555 HOH HOH . 
D 4 HOH A 27 628 556 HOH HOH . 
D 4 HOH A 28 629 557 HOH HOH . 
D 4 HOH A 29 630 558 HOH HOH . 
D 4 HOH A 30 631 559 HOH HOH . 
D 4 HOH A 31 632 561 HOH HOH . 
D 4 HOH A 32 633 562 HOH HOH . 
D 4 HOH A 33 634 563 HOH HOH . 
D 4 HOH A 34 635 564 HOH HOH . 
D 4 HOH A 35 636 565 HOH HOH . 
D 4 HOH A 36 637 566 HOH HOH . 
D 4 HOH A 37 638 567 HOH HOH . 
D 4 HOH A 38 639 570 HOH HOH . 
D 4 HOH A 39 640 571 HOH HOH . 
D 4 HOH A 40 641 572 HOH HOH . 
D 4 HOH A 41 642 573 HOH HOH . 
D 4 HOH A 42 643 574 HOH HOH . 
D 4 HOH A 43 644 575 HOH HOH . 
D 4 HOH A 44 645 576 HOH HOH . 
D 4 HOH A 45 646 577 HOH HOH . 
D 4 HOH A 46 647 579 HOH HOH . 
D 4 HOH A 47 648 580 HOH HOH . 
D 4 HOH A 48 649 582 HOH HOH . 
D 4 HOH A 49 650 583 HOH HOH . 
D 4 HOH A 50 651 584 HOH HOH . 
D 4 HOH A 51 652 585 HOH HOH . 
D 4 HOH A 52 653 586 HOH HOH . 
D 4 HOH A 53 654 587 HOH HOH . 
D 4 HOH A 54 655 588 HOH HOH . 
D 4 HOH A 55 656 590 HOH HOH . 
D 4 HOH A 56 657 591 HOH HOH . 
D 4 HOH A 57 658 592 HOH HOH . 
D 4 HOH A 58 659 593 HOH HOH . 
D 4 HOH A 59 660 595 HOH HOH . 
D 4 HOH A 60 661 596 HOH HOH . 
D 4 HOH A 61 662 597 HOH HOH . 
D 4 HOH A 62 663 598 HOH HOH . 
D 4 HOH A 63 664 604 HOH HOH . 
D 4 HOH A 64 665 605 HOH HOH . 
D 4 HOH A 65 666 606 HOH HOH . 
D 4 HOH A 66 667 607 HOH HOH . 
D 4 HOH A 67 668 608 HOH HOH . 
D 4 HOH A 68 669 609 HOH HOH . 
D 4 HOH A 69 670 610 HOH HOH . 
D 4 HOH A 70 671 611 HOH HOH . 
D 4 HOH A 71 672 612 HOH HOH . 
D 4 HOH A 72 673 613 HOH HOH . 
D 4 HOH A 73 674 614 HOH HOH . 
D 4 HOH A 74 675 615 HOH HOH . 
D 4 HOH A 75 676 616 HOH HOH . 
D 4 HOH A 76 677 617 HOH HOH . 
D 4 HOH A 77 678 618 HOH HOH . 
D 4 HOH A 78 679 619 HOH HOH . 
D 4 HOH A 79 680 620 HOH HOH . 
D 4 HOH A 80 681 621 HOH HOH . 
D 4 HOH A 81 682 622 HOH HOH . 
D 4 HOH A 82 683 623 HOH HOH . 
D 4 HOH A 83 684 624 HOH HOH . 
D 4 HOH A 84 685 625 HOH HOH . 
D 4 HOH A 85 686 626 HOH HOH . 
D 4 HOH A 86 687 627 HOH HOH . 
D 4 HOH A 87 688 628 HOH HOH . 
D 4 HOH A 88 689 629 HOH HOH . 
D 4 HOH A 89 690 630 HOH HOH . 
D 4 HOH A 90 691 631 HOH HOH . 
D 4 HOH A 91 692 632 HOH HOH . 
D 4 HOH A 92 693 633 HOH HOH . 
D 4 HOH A 93 694 634 HOH HOH . 
D 4 HOH A 94 695 635 HOH HOH . 
D 4 HOH A 95 696 636 HOH HOH . 
D 4 HOH A 96 697 637 HOH HOH . 
D 4 HOH A 97 698 638 HOH HOH . 
D 4 HOH A 98 699 639 HOH HOH . 
D 4 HOH A 99 700 640 HOH HOH . 
D 4 HOH A 100 701 641 HOH HOH . 
D 4 HOH A 101 702 642 HOH HOH . 
D 4 HOH A 102 703 643 HOH HOH . 
D 4 HOH A 103 704 644 HOH HOH . 
D 4 HOH A 104 705 645 HOH HOH . 
D 4 HOH A 105 706 646 HOH HOH . 
D 4 HOH A 106 707 647 HOH HOH . 
D 4 HOH A 107 708 648 HOH HOH . 
D 4 HOH A 108 709 649 HOH HOH . 
D 4 HOH A 109 710 650 HOH HOH . 
D 4 HOH A 110 711 651 HOH HOH . 
D 4 HOH A 111 712 652 HOH HOH . 
D 4 HOH A 112 713 653 HOH HOH . 
D 4 HOH A 113 714 654 HOH HOH . 
D 4 HOH A 114 715 655 HOH HOH . 
D 4 HOH A 115 716 656 HOH HOH . 
D 4 HOH A 116 717 657 HOH HOH . 
D 4 HOH A 117 718 658 HOH HOH . 
D 4 HOH A 118 719 659 HOH HOH . 
D 4 HOH A 119 720 660 HOH HOH . 
D 4 HOH A 120 721 661 HOH HOH . 
D 4 HOH A 121 722 662 HOH HOH . 
D 4 HOH A 122 723 663 HOH HOH . 
D 4 HOH A 123 724 664 HOH HOH . 
D 4 HOH A 124 725 665 HOH HOH . 
D 4 HOH A 125 726 666 HOH HOH . 
D 4 HOH A 126 727 667 HOH HOH . 
D 4 HOH A 127 728 668 HOH HOH . 
D 4 HOH A 128 729 669 HOH HOH . 
D 4 HOH A 129 730 670 HOH HOH . 
D 4 HOH A 130 731 671 HOH HOH . 
D 4 HOH A 131 732 672 HOH HOH . 
D 4 HOH A 132 733 673 HOH HOH . 
D 4 HOH A 133 734 674 HOH HOH . 
D 4 HOH A 134 735 675 HOH HOH . 
D 4 HOH A 135 736 676 HOH HOH . 
D 4 HOH A 136 737 677 HOH HOH . 
D 4 HOH A 137 738 678 HOH HOH . 
D 4 HOH A 138 739 679 HOH HOH . 
D 4 HOH A 139 740 680 HOH HOH . 
D 4 HOH A 140 741 681 HOH HOH . 
D 4 HOH A 141 742 682 HOH HOH . 
D 4 HOH A 142 743 683 HOH HOH . 
D 4 HOH A 143 744 684 HOH HOH . 
D 4 HOH A 144 745 685 HOH HOH . 
D 4 HOH A 145 746 686 HOH HOH . 
D 4 HOH A 146 747 687 HOH HOH . 
D 4 HOH A 147 748 688 HOH HOH . 
D 4 HOH A 148 749 689 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 4.926 31.704 21.699 1 14.95 ? PG GNP 528 A 1 
HETATM 2 O O1G GNP . . . C 3 4.709 32.099 23.11 1 17.31 ? O1G GNP 528 A 1 
HETATM 3 O O2G GNP . . . C 3 4.025 32.389 20.815 1 17.07 ? O2G GNP 528 A 1 
HETATM 4 O O3G GNP . . . C 3 4.449 30.249 21.585 1 16.98 ? O3G GNP 528 A 1 
HETATM 5 N N3B GNP . . . C 3 6.502 31.796 21.306 1 13.97 ? N3B GNP 528 A 1 
HETATM 6 P PB GNP . . . C 3 7.116 31.493 19.808 1 13.6 ? PB GNP 528 A 1 
HETATM 7 O O1B GNP . . . C 3 7.281 30.056 19.494 1 13.45 ? O1B GNP 528 A 1 
HETATM 8 O O2B GNP . . . C 3 6.498 32.254 18.731 1 15.72 ? O2B GNP 528 A 1 
HETATM 9 O O3A GNP . . . C 3 8.591 32.084 19.899 1 13.07 ? O3A GNP 528 A 1 
HETATM 10 P PA GNP . . . C 3 9.137 33.545 19.43 1 14.35 ? PA GNP 528 A 1 
HETATM 11 O O1A GNP . . . C 3 9.148 33.628 17.945 1 14.74 ? O1A GNP 528 A 1 
HETATM 12 O O2A GNP . . . C 3 8.462 34.626 20.194 1 15.72 ? O2A GNP 528 A 1 
HETATM 13 O O5' GNP . . . C 3 10.665 33.404 19.862 1 13.99 ? O5' GNP 528 A 1 
HETATM 14 C C5' GNP . . . C 3 11.007 33.294 21.276 1 16.26 ? C5' GNP 528 A 1 
HETATM 15 C C4' GNP . . . C 3 12.441 33.801 21.543 1 15.59 ? C4' GNP 528 A 1 
HETATM 16 O O4' GNP . . . C 3 13.361 33.011 20.756 1 16.53 ? O4' GNP 528 A 1 
HETATM 17 C C3' GNP . . . C 3 12.672 35.265 21.107 1 16.7 ? C3' GNP 528 A 1 
HETATM 18 O O3' GNP . . . C 3 13.565 35.96 22.014 1 19.9 ? O3' GNP 528 A 1 
HETATM 19 C C2' GNP . . . C 3 13.246 35.11 19.715 1 16.34 ? C2' GNP 528 A 1 
HETATM 20 O O2' GNP . . . C 3 14.105 36.175 19.302 1 18.48 ? O2' GNP 528 A 1 
HETATM 21 C C1' GNP . . . C 3 14.106 33.855 19.875 1 16.44 ? C1' GNP 528 A 1 
HETATM 22 N N9 GNP . . . C 3 14.283 33.127 18.61 1 14.83 ? N9 GNP 528 A 1 
HETATM 23 C C8 GNP . . . C 3 13.321 32.67 17.714 1 13.77 ? C8 GNP 528 A 1 
HETATM 24 N N7 GNP . . . C 3 13.788 32.05 16.685 1 13.58 ? N7 GNP 528 A 1 
HETATM 25 C C5 GNP . . . C 3 15.182 32.076 16.883 1 14.11 ? C5 GNP 528 A 1 
HETATM 26 C C6 GNP . . . C 3 16.276 31.545 16.084 1 12.89 ? C6 GNP 528 A 1 
HETATM 27 O O6 GNP . . . C 3 16.225 30.928 15.013 1 15.38 ? O6 GNP 528 A 1 
HETATM 28 N N1 GNP . . . C 3 17.532 31.798 16.663 1 14.82 ? N1 GNP 528 A 1 
HETATM 29 C C2 GNP . . . C 3 17.753 32.475 17.861 1 15.93 ? C2 GNP 528 A 1 
HETATM 30 N N2 GNP . . . C 3 19.026 32.632 18.275 1 17.69 ? N2 GNP 528 A 1 
HETATM 31 N N3 GNP . . . C 3 16.735 32.97 18.607 1 15.36 ? N3 GNP 528 A 1 
HETATM 32 C C4 GNP . . . C 3 15.485 32.74 18.071 1 14.24 ? C4 GNP 528 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#