data_2RGI
#
_model_server_result.job_id            doGM4wHlf0zPoTK4qcKRWA 
_model_server_result.datetime_utc      '2025-04-02 02:46:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rgi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":98}' 
#
_entry.id    2RGI 
#
_exptl.entry_id    2RGI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RGI 
_cell.length_a            43.516 
_cell.length_b            57.82 
_cell.length_c            59.794 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RGI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 21 A SER 20 1_555 C NA NA . A NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc2 A O GLU 24 A GLU 23 1_555 C NA NA . A NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc3 A O ASP 26 A ASP 25 1_555 C NA NA . A NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc4 A O LYS 29 A LYS 28 1_555 C NA NA . A NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 A O HIS 40 A HIS 39 1_555 D NA NA . A NA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc6 A O LEU 43 A LEU 42 1_555 D NA NA . A NA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc7 C NA NA . A NA 98 1_555 G O HOH . A HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc8 C NA NA . A NA 98 1_555 G O HOH . A HOH 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc9 D NA NA . A NA 99 1_555 G O HOH . A HOH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc10 B O SER 21 B SER 20 1_555 F NA NA . B NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc11 B O GLU 24 B GLU 23 1_555 F NA NA . B NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc12 B O ASP 26 B ASP 25 1_555 F NA NA . B NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc13 B O LYS 29 B LYS 28 1_555 F NA NA . B NA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc14 F NA NA . B NA 98 1_555 H O HOH . B HOH 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc15 F NA NA . B NA 98 1_555 H O HOH . B HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2RGI 
_atom_sites.fract_transf_matrix[1][1]    0.02298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017295 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 98 2 NA NA . 
D 2 NA A 1 99 3 NA NA . 
E 3 IPA A 1 100 5 IPA IPA . 
F 2 NA B 1 98 1 NA NA . 
G 4 HOH A 1 101 2 HOH HOH . 
G 4 HOH A 2 102 3 HOH HOH . 
G 4 HOH A 3 103 6 HOH HOH . 
G 4 HOH A 4 104 7 HOH HOH . 
G 4 HOH A 5 105 8 HOH HOH . 
G 4 HOH A 6 106 9 HOH HOH . 
G 4 HOH A 7 107 12 HOH HOH . 
G 4 HOH A 8 108 17 HOH HOH . 
G 4 HOH A 9 109 18 HOH HOH . 
G 4 HOH A 10 110 20 HOH HOH . 
G 4 HOH A 11 111 21 HOH HOH . 
G 4 HOH A 12 112 22 HOH HOH . 
G 4 HOH A 13 113 23 HOH HOH . 
G 4 HOH A 14 114 24 HOH HOH . 
G 4 HOH A 15 115 26 HOH HOH . 
G 4 HOH A 16 116 31 HOH HOH . 
G 4 HOH A 17 117 33 HOH HOH . 
G 4 HOH A 18 118 36 HOH HOH . 
G 4 HOH A 19 119 37 HOH HOH . 
G 4 HOH A 20 120 39 HOH HOH . 
G 4 HOH A 21 121 40 HOH HOH . 
G 4 HOH A 22 122 41 HOH HOH . 
G 4 HOH A 23 123 42 HOH HOH . 
G 4 HOH A 24 124 43 HOH HOH . 
G 4 HOH A 25 125 44 HOH HOH . 
G 4 HOH A 26 126 46 HOH HOH . 
G 4 HOH A 27 127 47 HOH HOH . 
G 4 HOH A 28 128 49 HOH HOH . 
G 4 HOH A 29 129 53 HOH HOH . 
G 4 HOH A 30 130 54 HOH HOH . 
G 4 HOH A 31 131 56 HOH HOH . 
G 4 HOH A 32 132 57 HOH HOH . 
G 4 HOH A 33 133 62 HOH HOH . 
G 4 HOH A 34 134 63 HOH HOH . 
G 4 HOH A 35 135 64 HOH HOH . 
G 4 HOH A 36 136 67 HOH HOH . 
G 4 HOH A 37 137 70 HOH HOH . 
G 4 HOH A 38 138 72 HOH HOH . 
G 4 HOH A 39 139 73 HOH HOH . 
G 4 HOH A 40 140 74 HOH HOH . 
G 4 HOH A 41 141 75 HOH HOH . 
G 4 HOH A 42 142 76 HOH HOH . 
G 4 HOH A 43 143 78 HOH HOH . 
G 4 HOH A 44 144 79 HOH HOH . 
G 4 HOH A 45 145 82 HOH HOH . 
G 4 HOH A 46 146 83 HOH HOH . 
G 4 HOH A 47 147 86 HOH HOH . 
G 4 HOH A 48 148 87 HOH HOH . 
G 4 HOH A 49 149 88 HOH HOH . 
G 4 HOH A 50 150 90 HOH HOH . 
G 4 HOH A 51 151 91 HOH HOH . 
G 4 HOH A 52 152 92 HOH HOH . 
G 4 HOH A 53 153 93 HOH HOH . 
G 4 HOH A 54 154 94 HOH HOH . 
G 4 HOH A 55 155 95 HOH HOH . 
G 4 HOH A 56 156 97 HOH HOH . 
G 4 HOH A 57 157 99 HOH HOH . 
G 4 HOH A 58 158 100 HOH HOH . 
G 4 HOH A 59 159 101 HOH HOH . 
G 4 HOH A 60 160 102 HOH HOH . 
G 4 HOH A 61 161 104 HOH HOH . 
G 4 HOH A 62 162 105 HOH HOH . 
G 4 HOH A 63 163 106 HOH HOH . 
G 4 HOH A 64 164 109 HOH HOH . 
G 4 HOH A 65 165 114 HOH HOH . 
G 4 HOH A 66 166 117 HOH HOH . 
G 4 HOH A 67 167 120 HOH HOH . 
G 4 HOH A 68 168 121 HOH HOH . 
G 4 HOH A 69 169 122 HOH HOH . 
G 4 HOH A 70 170 123 HOH HOH . 
G 4 HOH A 71 171 124 HOH HOH . 
G 4 HOH A 72 172 129 HOH HOH . 
G 4 HOH A 73 173 130 HOH HOH . 
G 4 HOH A 74 174 131 HOH HOH . 
G 4 HOH A 75 175 133 HOH HOH . 
G 4 HOH A 76 176 135 HOH HOH . 
G 4 HOH A 77 177 136 HOH HOH . 
G 4 HOH A 78 178 137 HOH HOH . 
G 4 HOH A 79 179 143 HOH HOH . 
G 4 HOH A 80 180 148 HOH HOH . 
G 4 HOH A 81 181 149 HOH HOH . 
G 4 HOH A 82 182 153 HOH HOH . 
G 4 HOH A 83 183 155 HOH HOH . 
G 4 HOH A 84 184 158 HOH HOH . 
G 4 HOH A 85 185 159 HOH HOH . 
G 4 HOH A 86 186 164 HOH HOH . 
G 4 HOH A 87 187 167 HOH HOH . 
G 4 HOH A 88 188 169 HOH HOH . 
G 4 HOH A 89 189 170 HOH HOH . 
G 4 HOH A 90 190 171 HOH HOH . 
G 4 HOH A 91 191 125 HOH HOH . 
G 4 HOH A 92 192 166 HOH HOH . 
H 4 HOH B 1 99 55 HOH HOH . 
H 4 HOH B 2 100 89 HOH HOH . 
H 4 HOH B 3 101 113 HOH HOH . 
H 4 HOH B 4 102 128 HOH HOH . 
H 4 HOH B 5 103 1 HOH HOH . 
H 4 HOH B 6 104 4 HOH HOH . 
H 4 HOH B 7 105 5 HOH HOH . 
H 4 HOH B 8 106 10 HOH HOH . 
H 4 HOH B 9 107 11 HOH HOH . 
H 4 HOH B 10 108 13 HOH HOH . 
H 4 HOH B 11 109 14 HOH HOH . 
H 4 HOH B 12 110 15 HOH HOH . 
H 4 HOH B 13 111 16 HOH HOH . 
H 4 HOH B 14 112 19 HOH HOH . 
H 4 HOH B 15 113 25 HOH HOH . 
H 4 HOH B 16 114 27 HOH HOH . 
H 4 HOH B 17 115 28 HOH HOH . 
H 4 HOH B 18 116 29 HOH HOH . 
H 4 HOH B 19 117 30 HOH HOH . 
H 4 HOH B 20 118 32 HOH HOH . 
H 4 HOH B 21 119 34 HOH HOH . 
H 4 HOH B 22 120 35 HOH HOH . 
H 4 HOH B 23 121 38 HOH HOH . 
H 4 HOH B 24 122 45 HOH HOH . 
H 4 HOH B 25 123 48 HOH HOH . 
H 4 HOH B 26 124 50 HOH HOH . 
H 4 HOH B 27 125 51 HOH HOH . 
H 4 HOH B 28 126 52 HOH HOH . 
H 4 HOH B 29 127 58 HOH HOH . 
H 4 HOH B 30 128 59 HOH HOH . 
H 4 HOH B 31 129 60 HOH HOH . 
H 4 HOH B 32 130 61 HOH HOH . 
H 4 HOH B 33 131 65 HOH HOH . 
H 4 HOH B 34 132 66 HOH HOH . 
H 4 HOH B 35 133 68 HOH HOH . 
H 4 HOH B 36 134 69 HOH HOH . 
H 4 HOH B 37 135 71 HOH HOH . 
H 4 HOH B 38 136 77 HOH HOH . 
H 4 HOH B 39 137 80 HOH HOH . 
H 4 HOH B 40 138 81 HOH HOH . 
H 4 HOH B 41 139 84 HOH HOH . 
H 4 HOH B 42 140 85 HOH HOH . 
H 4 HOH B 43 141 96 HOH HOH . 
H 4 HOH B 44 142 98 HOH HOH . 
H 4 HOH B 45 143 103 HOH HOH . 
H 4 HOH B 46 144 107 HOH HOH . 
H 4 HOH B 47 145 108 HOH HOH . 
H 4 HOH B 48 146 110 HOH HOH . 
H 4 HOH B 49 147 111 HOH HOH . 
H 4 HOH B 50 148 112 HOH HOH . 
H 4 HOH B 51 149 115 HOH HOH . 
H 4 HOH B 52 150 116 HOH HOH . 
H 4 HOH B 53 151 118 HOH HOH . 
H 4 HOH B 54 152 119 HOH HOH . 
H 4 HOH B 55 153 126 HOH HOH . 
H 4 HOH B 56 154 127 HOH HOH . 
H 4 HOH B 57 155 132 HOH HOH . 
H 4 HOH B 58 156 134 HOH HOH . 
H 4 HOH B 59 157 138 HOH HOH . 
H 4 HOH B 60 158 139 HOH HOH . 
H 4 HOH B 61 159 140 HOH HOH . 
H 4 HOH B 62 160 141 HOH HOH . 
H 4 HOH B 63 161 142 HOH HOH . 
H 4 HOH B 64 162 144 HOH HOH . 
H 4 HOH B 65 163 145 HOH HOH . 
H 4 HOH B 66 164 146 HOH HOH . 
H 4 HOH B 67 165 147 HOH HOH . 
H 4 HOH B 68 166 150 HOH HOH . 
H 4 HOH B 69 167 151 HOH HOH . 
H 4 HOH B 70 168 152 HOH HOH . 
H 4 HOH B 71 169 154 HOH HOH . 
H 4 HOH B 72 170 156 HOH HOH . 
H 4 HOH B 73 171 157 HOH HOH . 
H 4 HOH B 74 172 160 HOH HOH . 
H 4 HOH B 75 173 161 HOH HOH . 
H 4 HOH B 76 174 162 HOH HOH . 
H 4 HOH B 77 175 163 HOH HOH . 
H 4 HOH B 78 176 165 HOH HOH . 
H 4 HOH B 79 177 168 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -1.513 
_atom_site.Cartn_y               -0.183 
_atom_site.Cartn_z               0.844 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        9.4 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           98 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#