data_2RGP # _model_server_result.job_id 8qhKSZiguT7xl5eR-H5HZQ _model_server_result.datetime_utc '2024-12-21 06:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 2RGP # _exptl.entry_id 2RGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.523 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[1-(3-fluorobenzyl)-1H-indazol-5-yl]-5-[(piperidin-1-ylamino)methyl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RGP _cell.length_a 45.85 _cell.length_b 68.03 _cell.length_c 103.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 F N8' _chem_comp.formula_weight 446.523 _chem_comp.id HYZ _chem_comp.mon_nstd_flag . _chem_comp.name N-[1-(3-fluorobenzyl)-1H-indazol-5-yl]-5-[(piperidin-1-ylamino)methyl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HYZ doub 152 n y C6 C1 HYZ sing 153 n y C1 H1 HYZ sing 154 n n C2 C3 HYZ sing 155 n y C2 H2 HYZ sing 156 n n C3 C4 HYZ doub 157 n y C3 H3 HYZ sing 158 n n N6 C15 HYZ sing 159 n n N6 HN6 HYZ sing 160 n n N6 HN6A HYZ sing 161 n n N1 C7 HYZ sing 162 n n C4 C7 HYZ sing 163 n n C7 H7 HYZ sing 164 n n C7 H7A HYZ sing 165 n n C9 C8 HYZ sing 166 n y C8 N2 HYZ doub 167 n y C8 H8 HYZ sing 168 n n C14 C9 HYZ doub 169 n y C9 C10 HYZ sing 170 n y C11 C10 HYZ doub 171 n y C10 N1 HYZ sing 172 n y C12 C11 HYZ sing 173 n y C11 H11 HYZ sing 174 n n C13 C12 HYZ doub 175 n y C12 H12 HYZ sing 176 n n N3 C13 HYZ sing 177 n n C13 C14 HYZ sing 178 n y C14 H14 HYZ sing 179 n n C15 C16 HYZ doub 180 n y C15 N4 HYZ sing 181 n y C19 C16 HYZ sing 182 n n C16 C17 HYZ sing 183 n y N7 C19 HYZ sing 184 n n C19 H19 HYZ sing 185 n n C19 H19A HYZ sing 186 n n C20 C21 HYZ sing 187 n n C20 C24 HYZ sing 188 n n C20 H20 HYZ sing 189 n n C20 H20A HYZ sing 190 n n C21 N8 HYZ sing 191 n n C21 H21 HYZ sing 192 n n C21 H21A HYZ sing 193 n n N8 C22 HYZ sing 194 n n C23 C22 HYZ sing 195 n n C22 H22 HYZ sing 196 n n C22 H22A HYZ sing 197 n n C24 C23 HYZ sing 198 n n C24 H24 HYZ sing 199 n n C24 H24A HYZ sing 200 n n C4 C5 HYZ sing 201 n y C5 C6 HYZ doub 202 n y C5 H5 HYZ sing 203 n n F1 C6 HYZ sing 204 n n N1 N2 HYZ sing 205 n y C17 N3 HYZ sing 206 n n N3 HN3 HYZ sing 207 n n N4 C18 HYZ doub 208 n y C17 N5 HYZ doub 209 n y C18 N5 HYZ sing 210 n y C18 H18 HYZ sing 211 n n N8 N7 HYZ sing 212 n n N7 HN7 HYZ sing 213 n n C23 H23 HYZ sing 214 n n C23 H23A HYZ sing 215 n n # _atom_sites.entry_id 2RGP _atom_sites.fract_transf_matrix[1][1] 0.02181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 81 81 PO4 PO4 . C 2 PO4 A 1 82 82 PO4 PO4 . D 3 HYZ A 1 1 1 HYZ HYZ . E 4 HOH A 1 1017 1017 HOH HOH . E 4 HOH A 2 1018 1018 HOH HOH . E 4 HOH A 3 1019 1019 HOH HOH . E 4 HOH A 4 1020 1020 HOH HOH . E 4 HOH A 5 1021 1021 HOH HOH . E 4 HOH A 6 1022 1022 HOH HOH . E 4 HOH A 7 1023 1023 HOH HOH . E 4 HOH A 8 1024 1024 HOH HOH . E 4 HOH A 9 1025 1025 HOH HOH . E 4 HOH A 10 1026 1026 HOH HOH . E 4 HOH A 11 1027 1027 HOH HOH . E 4 HOH A 12 1028 1028 HOH HOH . E 4 HOH A 13 1029 1029 HOH HOH . E 4 HOH A 14 1030 1030 HOH HOH . E 4 HOH A 15 1031 1031 HOH HOH . E 4 HOH A 16 1032 1032 HOH HOH . E 4 HOH A 17 1033 1033 HOH HOH . E 4 HOH A 18 1034 1034 HOH HOH . E 4 HOH A 19 1035 1035 HOH HOH . E 4 HOH A 20 1036 1036 HOH HOH . E 4 HOH A 21 1037 1037 HOH HOH . E 4 HOH A 22 1038 1038 HOH HOH . E 4 HOH A 23 1039 1039 HOH HOH . E 4 HOH A 24 1040 1040 HOH HOH . E 4 HOH A 25 1041 1041 HOH HOH . E 4 HOH A 26 1042 1042 HOH HOH . E 4 HOH A 27 1043 1043 HOH HOH . E 4 HOH A 28 1044 1044 HOH HOH . E 4 HOH A 29 1045 1045 HOH HOH . E 4 HOH A 30 1046 1046 HOH HOH . E 4 HOH A 31 1047 1047 HOH HOH . E 4 HOH A 32 1048 1048 HOH HOH . E 4 HOH A 33 1049 1049 HOH HOH . E 4 HOH A 34 1050 1050 HOH HOH . E 4 HOH A 35 1051 1051 HOH HOH . E 4 HOH A 36 1052 1052 HOH HOH . E 4 HOH A 37 1053 1053 HOH HOH . E 4 HOH A 38 1054 1054 HOH HOH . E 4 HOH A 39 1055 1055 HOH HOH . E 4 HOH A 40 1056 1056 HOH HOH . E 4 HOH A 41 1057 1057 HOH HOH . E 4 HOH A 42 1058 1058 HOH HOH . E 4 HOH A 43 1059 1059 HOH HOH . E 4 HOH A 44 1060 1060 HOH HOH . E 4 HOH A 45 1061 1061 HOH HOH . E 4 HOH A 46 1062 1062 HOH HOH . E 4 HOH A 47 1063 1063 HOH HOH . E 4 HOH A 48 1064 1064 HOH HOH . E 4 HOH A 49 1065 1065 HOH HOH . E 4 HOH A 50 1066 1066 HOH HOH . E 4 HOH A 51 1067 1067 HOH HOH . E 4 HOH A 52 1068 1068 HOH HOH . E 4 HOH A 53 1069 1069 HOH HOH . E 4 HOH A 54 1070 1070 HOH HOH . E 4 HOH A 55 1071 1071 HOH HOH . E 4 HOH A 56 1072 1072 HOH HOH . E 4 HOH A 57 1073 1073 HOH HOH . E 4 HOH A 58 1074 1074 HOH HOH . E 4 HOH A 59 1075 1075 HOH HOH . E 4 HOH A 60 1076 1076 HOH HOH . E 4 HOH A 61 1077 1077 HOH HOH . E 4 HOH A 62 1078 1078 HOH HOH . E 4 HOH A 63 1081 1081 HOH HOH . E 4 HOH A 64 1083 1083 HOH HOH . E 4 HOH A 65 1084 1084 HOH HOH . E 4 HOH A 66 1085 1085 HOH HOH . E 4 HOH A 67 1086 1086 HOH HOH . E 4 HOH A 68 1087 1087 HOH HOH . E 4 HOH A 69 1088 1088 HOH HOH . E 4 HOH A 70 1089 1089 HOH HOH . E 4 HOH A 71 1090 1090 HOH HOH . E 4 HOH A 72 1091 1091 HOH HOH . E 4 HOH A 73 1092 1092 HOH HOH . E 4 HOH A 74 1093 1093 HOH HOH . E 4 HOH A 75 1094 1094 HOH HOH . E 4 HOH A 76 1095 1095 HOH HOH . E 4 HOH A 77 1096 1096 HOH HOH . E 4 HOH A 78 1098 1098 HOH HOH . E 4 HOH A 79 1099 1099 HOH HOH . E 4 HOH A 80 1100 1100 HOH HOH . E 4 HOH A 81 1101 1101 HOH HOH . E 4 HOH A 82 1102 1102 HOH HOH . E 4 HOH A 83 1103 1103 HOH HOH . E 4 HOH A 84 1104 1104 HOH HOH . E 4 HOH A 85 1105 1105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HYZ . . . D 3 14.718 40.116 97.099 1 26.58 ? C1 HYZ 1 A 1 HETATM 2 C C2 HYZ . . . D 3 16.031 40.222 97.632 1 26.39 ? C2 HYZ 1 A 1 HETATM 3 C C3 HYZ . . . D 3 16.878 39.076 97.686 1 26.49 ? C3 HYZ 1 A 1 HETATM 4 N N6 HYZ . . . D 3 13.967 33.258 86.949 1 30.41 ? N6 HYZ 1 A 1 HETATM 5 C C7 HYZ . . . D 3 17.323 36.558 97.26 1 29.7 ? C7 HYZ 1 A 1 HETATM 6 C C8 HYZ . . . D 3 15.585 33.76 95.994 1 27.63 ? C8 HYZ 1 A 1 HETATM 7 C C9 HYZ . . . D 3 16.075 34.221 94.756 1 28.62 ? C9 HYZ 1 A 1 HETATM 8 C C10 HYZ . . . D 3 16.84 35.358 95.07 1 28.78 ? C10 HYZ 1 A 1 HETATM 9 C C11 HYZ . . . D 3 17.514 36.129 94.076 1 29.95 ? C11 HYZ 1 A 1 HETATM 10 C C12 HYZ . . . D 3 17.39 35.712 92.735 1 28.59 ? C12 HYZ 1 A 1 HETATM 11 C C13 HYZ . . . D 3 16.625 34.574 92.382 1 28.21 ? C13 HYZ 1 A 1 HETATM 12 C C14 HYZ . . . D 3 15.965 33.817 93.403 1 26.85 ? C14 HYZ 1 A 1 HETATM 13 C C15 HYZ . . . D 3 14.124 33.645 88.264 1 31.82 ? C15 HYZ 1 A 1 HETATM 14 C C16 HYZ . . . D 3 15.391 33.719 88.896 1 33.4 ? C16 HYZ 1 A 1 HETATM 15 C C19 HYZ . . . D 3 16.644 33.395 88.186 1 36.43 ? C19 HYZ 1 A 1 HETATM 16 C C20 HYZ . . . D 3 19.509 31.997 84.858 1 52.96 ? C20 HYZ 1 A 1 HETATM 17 C C21 HYZ . . . D 3 18.127 31.934 85.537 1 51.73 ? C21 HYZ 1 A 1 HETATM 18 C C22 HYZ . . . D 3 19.167 31.524 87.74 1 52.67 ? C22 HYZ 1 A 1 HETATM 19 C C24 HYZ . . . D 3 20.554 31.19 85.635 1 54.58 ? C24 HYZ 1 A 1 HETATM 20 C C4 HYZ . . . D 3 16.419 37.808 97.209 1 28.26 ? C4 HYZ 1 A 1 HETATM 21 C C5 HYZ . . . D 3 15.083 37.73 96.675 1 27.89 ? C5 HYZ 1 A 1 HETATM 22 C C6 HYZ . . . D 3 14.256 38.869 96.625 1 27.99 ? C6 HYZ 1 A 1 HETATM 23 F F1 HYZ . . . D 3 13.011 38.756 96.118 1 30.98 ? F1 HYZ 1 A 1 HETATM 24 N N1 HYZ . . . D 3 16.731 35.493 96.434 1 29.97 ? N1 HYZ 1 A 1 HETATM 25 N N2 HYZ . . . D 3 15.971 34.519 97.019 1 29.65 ? N2 HYZ 1 A 1 HETATM 26 N N3 HYZ . . . D 3 16.525 34.248 91.037 1 27.61 ? N3 HYZ 1 A 1 HETATM 27 N N4 HYZ . . . D 3 12.954 33.963 88.911 1 31.48 ? N4 HYZ 1 A 1 HETATM 28 C C17 HYZ . . . D 3 15.391 34.12 90.231 1 31.53 ? C17 HYZ 1 A 1 HETATM 29 N N5 HYZ . . . D 3 14.212 34.444 90.892 1 30.04 ? N5 HYZ 1 A 1 HETATM 30 C C18 HYZ . . . D 3 13.041 34.352 90.201 1 31.32 ? C18 HYZ 1 A 1 HETATM 31 N N7 HYZ . . . D 3 16.9 32.29 87.559 1 46.14 ? N7 HYZ 1 A 1 HETATM 32 N N8 HYZ . . . D 3 18.146 32.344 86.984 1 50.47 ? N8 HYZ 1 A 1 HETATM 33 C C23 HYZ . . . D 3 20.573 31.596 87.112 1 53.73 ? C23 HYZ 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #