data_2RGZ
#
_model_server_result.job_id            J_Bhe9Y-WxWLAMAiMGtkMQ 
_model_server_result.datetime_utc      '2024-11-20 11:45:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":265}' 
#
_entry.id    2RGZ 
#
_exptl.entry_id    2RGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RGZ 
_cell.length_a            74.977 
_cell.length_b            85.094 
_cell.length_c            97.846 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 45 A HIS 45 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 B NE2 HIS 45 B HIS 45 1_555 D FE HEM . B HEM 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     2RGZ 
_atom_sites.fract_transf_matrix[1][1]    0.013337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011752 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 300 300 HEM HEM . 
D 2 HEM B 1 265 45 HEM HEM . 
E 3 HOH A 1 301 1 HOH HOH . 
E 3 HOH A 2 302 2 HOH HOH . 
E 3 HOH A 3 303 3 HOH HOH . 
E 3 HOH A 4 304 4 HOH HOH . 
E 3 HOH A 5 305 5 HOH HOH . 
E 3 HOH A 6 306 6 HOH HOH . 
E 3 HOH A 7 307 7 HOH HOH . 
E 3 HOH A 8 308 8 HOH HOH . 
E 3 HOH A 9 309 9 HOH HOH . 
E 3 HOH A 10 310 12 HOH HOH . 
E 3 HOH A 11 311 15 HOH HOH . 
E 3 HOH A 12 312 16 HOH HOH . 
E 3 HOH A 13 313 18 HOH HOH . 
E 3 HOH A 14 314 19 HOH HOH . 
E 3 HOH A 15 315 21 HOH HOH . 
E 3 HOH A 16 316 22 HOH HOH . 
E 3 HOH A 17 317 24 HOH HOH . 
E 3 HOH A 18 318 25 HOH HOH . 
E 3 HOH A 19 319 28 HOH HOH . 
E 3 HOH A 20 320 29 HOH HOH . 
E 3 HOH A 21 321 30 HOH HOH . 
E 3 HOH A 22 322 33 HOH HOH . 
E 3 HOH A 23 323 39 HOH HOH . 
E 3 HOH A 24 324 42 HOH HOH . 
E 3 HOH A 25 325 45 HOH HOH . 
E 3 HOH A 26 326 46 HOH HOH . 
E 3 HOH A 27 327 49 HOH HOH . 
E 3 HOH A 28 328 50 HOH HOH . 
E 3 HOH A 29 329 51 HOH HOH . 
E 3 HOH A 30 330 53 HOH HOH . 
E 3 HOH A 31 331 55 HOH HOH . 
E 3 HOH A 32 332 56 HOH HOH . 
E 3 HOH A 33 333 58 HOH HOH . 
E 3 HOH A 34 334 59 HOH HOH . 
E 3 HOH A 35 335 61 HOH HOH . 
E 3 HOH A 36 336 62 HOH HOH . 
E 3 HOH A 37 337 63 HOH HOH . 
E 3 HOH A 38 338 64 HOH HOH . 
E 3 HOH A 39 339 66 HOH HOH . 
E 3 HOH A 40 340 67 HOH HOH . 
E 3 HOH A 41 341 69 HOH HOH . 
E 3 HOH A 42 342 71 HOH HOH . 
E 3 HOH A 43 343 72 HOH HOH . 
E 3 HOH A 44 344 73 HOH HOH . 
E 3 HOH A 45 345 79 HOH HOH . 
E 3 HOH A 46 346 80 HOH HOH . 
E 3 HOH A 47 347 81 HOH HOH . 
E 3 HOH A 48 348 82 HOH HOH . 
E 3 HOH A 49 349 83 HOH HOH . 
F 3 HOH B 1 266 10 HOH HOH . 
F 3 HOH B 2 267 11 HOH HOH . 
F 3 HOH B 3 268 13 HOH HOH . 
F 3 HOH B 4 269 14 HOH HOH . 
F 3 HOH B 5 270 17 HOH HOH . 
F 3 HOH B 6 271 20 HOH HOH . 
F 3 HOH B 7 272 23 HOH HOH . 
F 3 HOH B 8 273 26 HOH HOH . 
F 3 HOH B 9 274 27 HOH HOH . 
F 3 HOH B 10 275 31 HOH HOH . 
F 3 HOH B 11 276 32 HOH HOH . 
F 3 HOH B 12 277 34 HOH HOH . 
F 3 HOH B 13 278 35 HOH HOH . 
F 3 HOH B 14 279 36 HOH HOH . 
F 3 HOH B 15 280 37 HOH HOH . 
F 3 HOH B 16 281 38 HOH HOH . 
F 3 HOH B 17 282 40 HOH HOH . 
F 3 HOH B 18 283 41 HOH HOH . 
F 3 HOH B 19 284 43 HOH HOH . 
F 3 HOH B 20 285 44 HOH HOH . 
F 3 HOH B 21 286 47 HOH HOH . 
F 3 HOH B 22 287 48 HOH HOH . 
F 3 HOH B 23 288 52 HOH HOH . 
F 3 HOH B 24 289 54 HOH HOH . 
F 3 HOH B 25 290 57 HOH HOH . 
F 3 HOH B 26 291 60 HOH HOH . 
F 3 HOH B 27 292 65 HOH HOH . 
F 3 HOH B 28 293 68 HOH HOH . 
F 3 HOH B 29 294 70 HOH HOH . 
F 3 HOH B 30 295 74 HOH HOH . 
F 3 HOH B 31 296 75 HOH HOH . 
F 3 HOH B 32 297 76 HOH HOH . 
F 3 HOH B 33 298 77 HOH HOH . 
F 3 HOH B 34 299 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 57.017 6.971 27.28 0.06 63.74 ? CHA HEM 265 B 1 
HETATM 2 C CHB HEM . . . D 2 60.795 9.722 26.227 0.06 65.05 ? CHB HEM 265 B 1 
HETATM 3 C CHC HEM . . . D 2 57.834 13.122 24.548 0.06 64.01 ? CHC HEM 265 B 1 
HETATM 4 C CHD HEM . . . D 2 54.039 10.331 25.547 0.06 64.09 ? CHD HEM 265 B 1 
HETATM 5 C C1A HEM . . . D 2 58.305 7.401 27.079 0.06 63.74 ? C1A HEM 265 B 1 
HETATM 6 C C2A HEM . . . D 2 59.496 6.651 27.481 0.06 63.73 ? C2A HEM 265 B 1 
HETATM 7 C C3A HEM . . . D 2 60.552 7.415 27.145 0.06 64.09 ? C3A HEM 265 B 1 
HETATM 8 C C4A HEM . . . D 2 60.019 8.649 26.6 0.06 64.33 ? C4A HEM 265 B 1 
HETATM 9 C CMA HEM . . . D 2 62.015 7.018 27.242 0.06 63.74 ? CMA HEM 265 B 1 
HETATM 10 C CAA HEM . . . D 2 59.539 5.365 28.311 0.06 62.58 ? CAA HEM 265 B 1 
HETATM 11 C CBA HEM . . . D 2 58.986 4.135 27.581 0.06 63.39 ? CBA HEM 265 B 1 
HETATM 12 C CGA HEM . . . D 2 58.151 3.217 28.483 0.06 60.94 ? CGA HEM 265 B 1 
HETATM 13 O O1A HEM . . . D 2 57.101 3.673 28.985 0.06 59.79 ? O1A HEM 265 B 1 
HETATM 14 O O2A HEM . . . D 2 58.54 2.045 28.681 0.06 57.96 ? O2A HEM 265 B 1 
HETATM 15 C C1B HEM . . . D 2 60.313 10.907 25.716 0.06 65.79 ? C1B HEM 265 B 1 
HETATM 16 C C2B HEM . . . D 2 61.146 12.053 25.401 0.06 65.39 ? C2B HEM 265 B 1 
HETATM 17 C C3B HEM . . . D 2 60.308 13.03 24.979 0.06 64.29 ? C3B HEM 265 B 1 
HETATM 18 C C4B HEM . . . D 2 58.965 12.461 24.98 0.06 63.83 ? C4B HEM 265 B 1 
HETATM 19 C CMB HEM . . . D 2 62.668 12.134 25.477 0.06 63.31 ? CMB HEM 265 B 1 
HETATM 20 C CAB HEM . . . D 2 60.647 14.346 24.741 0.06 65.6 ? CAB HEM 265 B 1 
HETATM 21 C CBB HEM . . . D 2 60.263 15.403 25.664 0.06 65.6 ? CBB HEM 265 B 1 
HETATM 22 C C1C HEM . . . D 2 56.55 12.634 24.622 0.06 64.32 ? C1C HEM 265 B 1 
HETATM 23 C C2C HEM . . . D 2 55.387 13.317 24.083 0.06 65.66 ? C2C HEM 265 B 1 
HETATM 24 C C3C HEM . . . D 2 54.317 12.543 24.363 0.06 64.05 ? C3C HEM 265 B 1 
HETATM 25 C C4C HEM . . . D 2 54.825 11.387 25.094 0.06 64.84 ? C4C HEM 265 B 1 
HETATM 26 C CMC HEM . . . D 2 55.362 14.653 23.341 0.06 65.25 ? CMC HEM 265 B 1 
HETATM 27 C CAC HEM . . . D 2 53.027 12.743 23.893 0.06 62.44 ? CAC HEM 265 B 1 
HETATM 28 C CBC HEM . . . D 2 51.986 13.31 24.718 0.06 62.65 ? CBC HEM 265 B 1 
HETATM 29 C C1D HEM . . . D 2 54.519 9.186 26.153 0.06 63.97 ? C1D HEM 265 B 1 
HETATM 30 C C2D HEM . . . D 2 53.69 8.054 26.538 0.06 64.11 ? C2D HEM 265 B 1 
HETATM 31 C C3D HEM . . . D 2 54.527 7.123 27.073 0.06 64.12 ? C3D HEM 265 B 1 
HETATM 32 C C4D HEM . . . D 2 55.875 7.678 26.975 0.06 64.03 ? C4D HEM 265 B 1 
HETATM 33 C CMD HEM . . . D 2 52.212 7.859 26.222 0.06 62.97 ? CMD HEM 265 B 1 
HETATM 34 C CAD HEM . . . D 2 54.137 5.72 27.56 0.06 61.04 ? CAD HEM 265 B 1 
HETATM 35 C CBD HEM . . . D 2 54.614 4.605 26.617 0.06 60.16 ? CBD HEM 265 B 1 
HETATM 36 C CGD HEM . . . D 2 54.276 3.198 27.102 0.06 59.77 ? CGD HEM 265 B 1 
HETATM 37 O O1D HEM . . . D 2 53.147 2.727 26.843 0.06 59.45 ? O1D HEM 265 B 1 
HETATM 38 O O2D HEM . . . D 2 55.143 2.566 27.747 0.06 57.91 ? O2D HEM 265 B 1 
HETATM 39 N NA HEM . . . D 2 58.634 8.627 26.536 0.06 64 ? NA HEM 265 B 1 
HETATM 40 N NB HEM . . . D 2 58.966 11.168 25.468 0.06 65.03 ? NB HEM 265 B 1 
HETATM 41 N NC HEM . . . D 2 56.209 11.435 25.216 0.06 64.29 ? NC HEM 265 B 1 
HETATM 42 N ND HEM . . . D 2 55.868 8.943 26.405 0.06 64.21 ? ND HEM 265 B 1 
HETATM 43 FE FE HEM . . . D 2 57.417 9.983 25.765 0.06 64.18 ? FE HEM 265 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    445 
_model_server_stats.query_time_ms           4954 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           43 
#