data_2RH1 # _model_server_result.job_id 57jyLlFuQYQNV1m-qsR3pA _model_server_result.datetime_utc '2024-11-22 11:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":409}' # _entry.id 2RH1 # _exptl.entry_id 2RH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.62 _cell.angle_gamma 90 _cell.entry_id 2RH1 _cell.length_a 106.318 _cell.length_b 169.24 _cell.length_c 40.154 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 401 MAL 2 n B GLC 2 B 2 GLC A 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 L C2 ACM . A ACM 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 P C1 PLM . A PLM 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale3 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 164 n n C1 O5 BU1 sing 165 n n C1 H11 BU1 sing 166 n n C1 H12 BU1 sing 167 n n C2 C3 BU1 sing 168 n n C2 H21 BU1 sing 169 n n C2 H22 BU1 sing 170 n n C3 C4 BU1 sing 171 n n C3 H31 BU1 sing 172 n n C3 H32 BU1 sing 173 n n C4 O6 BU1 sing 174 n n C4 H41 BU1 sing 175 n n C4 H42 BU1 sing 176 n n O5 HO5 BU1 sing 177 n n O6 HO6 BU1 sing 178 n n # _atom_sites.entry_id 2RH1 _atom_sites.fract_transf_matrix[1][1] 0.009406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 402 402 SO4 SO4 . D 3 SO4 A 1 403 403 SO4 SO4 . E 3 SO4 A 1 404 404 SO4 SO4 . F 3 SO4 A 1 405 405 SO4 SO4 . G 3 SO4 A 1 406 406 SO4 SO4 . H 3 SO4 A 1 407 407 SO4 SO4 . I 4 CAU A 1 408 408 CAU CAU . J 5 BU1 A 1 409 409 BU1 BU1 . K 5 BU1 A 1 410 410 BU1 BU1 . L 6 ACM A 1 411 411 ACM ACM . M 7 CLR A 1 412 412 CLR CLR . N 7 CLR A 1 413 413 CLR CLR . O 7 CLR A 1 414 414 CLR CLR . P 8 PLM A 1 415 415 PLM PLM . Q 9 12P A 1 416 416 12P 12P . R 10 HOH A 1 501 501 HOH HOH . R 10 HOH A 2 502 502 HOH HOH . R 10 HOH A 3 503 503 HOH HOH . R 10 HOH A 4 504 504 HOH HOH . R 10 HOH A 5 505 505 HOH HOH . R 10 HOH A 6 506 506 HOH HOH . R 10 HOH A 7 507 507 HOH HOH . R 10 HOH A 8 508 508 HOH HOH . R 10 HOH A 9 509 509 HOH HOH . R 10 HOH A 10 510 510 HOH HOH . R 10 HOH A 11 511 511 HOH HOH . R 10 HOH A 12 512 512 HOH HOH . R 10 HOH A 13 513 513 HOH HOH . R 10 HOH A 14 514 514 HOH HOH . R 10 HOH A 15 515 515 HOH HOH . R 10 HOH A 16 516 516 HOH HOH . R 10 HOH A 17 517 517 HOH HOH . R 10 HOH A 18 518 518 HOH HOH . R 10 HOH A 19 519 519 HOH HOH . R 10 HOH A 20 520 520 HOH HOH . R 10 HOH A 21 521 521 HOH HOH . R 10 HOH A 22 522 522 HOH HOH . R 10 HOH A 23 523 523 HOH HOH . R 10 HOH A 24 524 524 HOH HOH . R 10 HOH A 25 525 525 HOH HOH . R 10 HOH A 26 526 526 HOH HOH . R 10 HOH A 27 527 527 HOH HOH . R 10 HOH A 28 528 528 HOH HOH . R 10 HOH A 29 529 529 HOH HOH . R 10 HOH A 30 530 530 HOH HOH . R 10 HOH A 31 531 531 HOH HOH . R 10 HOH A 32 532 532 HOH HOH . R 10 HOH A 33 533 533 HOH HOH . R 10 HOH A 34 534 534 HOH HOH . R 10 HOH A 35 535 535 HOH HOH . R 10 HOH A 36 536 536 HOH HOH . R 10 HOH A 37 537 537 HOH HOH . R 10 HOH A 38 538 538 HOH HOH . R 10 HOH A 39 539 539 HOH HOH . R 10 HOH A 40 540 540 HOH HOH . R 10 HOH A 41 541 541 HOH HOH . R 10 HOH A 42 542 542 HOH HOH . R 10 HOH A 43 543 543 HOH HOH . R 10 HOH A 44 544 544 HOH HOH . R 10 HOH A 45 545 545 HOH HOH . R 10 HOH A 46 546 546 HOH HOH . R 10 HOH A 47 547 547 HOH HOH . R 10 HOH A 48 548 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . J 5 -26.142 41.424 19.127 1 52.74 ? C1 BU1 409 A 1 HETATM 2 C C2 BU1 . . . J 5 -24.673 41.194 19.349 1 50.5 ? C2 BU1 409 A 1 HETATM 3 C C3 BU1 . . . J 5 -24.361 39.703 19.256 1 58.68 ? C3 BU1 409 A 1 HETATM 4 C C4 BU1 . . . J 5 -23.639 39.193 20.492 1 60.9 ? C4 BU1 409 A 1 HETATM 5 O O5 BU1 . . . J 5 -26.449 42.812 19.063 1 46.89 ? O5 BU1 409 A 1 HETATM 6 O O6 BU1 . . . J 5 -23.397 37.796 20.358 1 65.39 ? O6 BU1 409 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #