data_2RH1 # _model_server_result.job_id cgqFCVEdbV3NYdW75dT6bA _model_server_result.datetime_utc '2024-10-18 04:24:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":416}' # _entry.id 2RH1 # _exptl.entry_id 2RH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.62 _cell.angle_gamma 90 _cell.entry_id 2RH1 _cell.length_a 106.318 _cell.length_b 169.24 _cell.length_c 40.154 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 401 MAL 2 n B GLC 2 B 2 GLC A 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 L C2 ACM . A ACM 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 P C1 PLM . A PLM 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale3 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 2RH1 _atom_sites.fract_transf_matrix[1][1] 0.009406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 402 402 SO4 SO4 . D 3 SO4 A 1 403 403 SO4 SO4 . E 3 SO4 A 1 404 404 SO4 SO4 . F 3 SO4 A 1 405 405 SO4 SO4 . G 3 SO4 A 1 406 406 SO4 SO4 . H 3 SO4 A 1 407 407 SO4 SO4 . I 4 CAU A 1 408 408 CAU CAU . J 5 BU1 A 1 409 409 BU1 BU1 . K 5 BU1 A 1 410 410 BU1 BU1 . L 6 ACM A 1 411 411 ACM ACM . M 7 CLR A 1 412 412 CLR CLR . N 7 CLR A 1 413 413 CLR CLR . O 7 CLR A 1 414 414 CLR CLR . P 8 PLM A 1 415 415 PLM PLM . Q 9 12P A 1 416 416 12P 12P . R 10 HOH A 1 501 501 HOH HOH . R 10 HOH A 2 502 502 HOH HOH . R 10 HOH A 3 503 503 HOH HOH . R 10 HOH A 4 504 504 HOH HOH . R 10 HOH A 5 505 505 HOH HOH . R 10 HOH A 6 506 506 HOH HOH . R 10 HOH A 7 507 507 HOH HOH . R 10 HOH A 8 508 508 HOH HOH . R 10 HOH A 9 509 509 HOH HOH . R 10 HOH A 10 510 510 HOH HOH . R 10 HOH A 11 511 511 HOH HOH . R 10 HOH A 12 512 512 HOH HOH . R 10 HOH A 13 513 513 HOH HOH . R 10 HOH A 14 514 514 HOH HOH . R 10 HOH A 15 515 515 HOH HOH . R 10 HOH A 16 516 516 HOH HOH . R 10 HOH A 17 517 517 HOH HOH . R 10 HOH A 18 518 518 HOH HOH . R 10 HOH A 19 519 519 HOH HOH . R 10 HOH A 20 520 520 HOH HOH . R 10 HOH A 21 521 521 HOH HOH . R 10 HOH A 22 522 522 HOH HOH . R 10 HOH A 23 523 523 HOH HOH . R 10 HOH A 24 524 524 HOH HOH . R 10 HOH A 25 525 525 HOH HOH . R 10 HOH A 26 526 526 HOH HOH . R 10 HOH A 27 527 527 HOH HOH . R 10 HOH A 28 528 528 HOH HOH . R 10 HOH A 29 529 529 HOH HOH . R 10 HOH A 30 530 530 HOH HOH . R 10 HOH A 31 531 531 HOH HOH . R 10 HOH A 32 532 532 HOH HOH . R 10 HOH A 33 533 533 HOH HOH . R 10 HOH A 34 534 534 HOH HOH . R 10 HOH A 35 535 535 HOH HOH . R 10 HOH A 36 536 536 HOH HOH . R 10 HOH A 37 537 537 HOH HOH . R 10 HOH A 38 538 538 HOH HOH . R 10 HOH A 39 539 539 HOH HOH . R 10 HOH A 40 540 540 HOH HOH . R 10 HOH A 41 541 541 HOH HOH . R 10 HOH A 42 542 542 HOH HOH . R 10 HOH A 43 543 543 HOH HOH . R 10 HOH A 44 544 544 HOH HOH . R 10 HOH A 45 545 545 HOH HOH . R 10 HOH A 46 546 546 HOH HOH . R 10 HOH A 47 547 547 HOH HOH . R 10 HOH A 48 548 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 12P . . . Q 9 -12.915 54.897 17.807 1 109.6 ? C35 12P 416 A 1 HETATM 2 O O34 12P . . . Q 9 -13.949 54.683 18.777 1 110.8 ? O34 12P 416 A 1 HETATM 3 C C33 12P . . . Q 9 -13.451 54.394 20.091 1 108.13 ? C33 12P 416 A 1 HETATM 4 C C32 12P . . . Q 9 -13.568 55.622 20.982 1 105.37 ? C32 12P 416 A 1 HETATM 5 O O31 12P . . . Q 9 -12.299 56.022 21.539 1 101.39 ? O31 12P 416 A 1 HETATM 6 C C30 12P . . . Q 9 -12.283 57.34 22.133 1 102 ? C30 12P 416 A 1 HETATM 7 C C29 12P . . . Q 9 -13.231 57.476 23.346 1 99.93 ? C29 12P 416 A 1 HETATM 8 O O28 12P . . . Q 9 -14.58 57.575 22.874 1 94.22 ? O28 12P 416 A 1 HETATM 9 C C27 12P . . . Q 9 -15.58 58.132 23.72 1 91.37 ? C27 12P 416 A 1 HETATM 10 C C26 12P . . . Q 9 -16.528 58.912 22.82 1 89.49 ? C26 12P 416 A 1 HETATM 11 O O25 12P . . . Q 9 -15.752 59.825 22.016 1 91.31 ? O25 12P 416 A 1 HETATM 12 C C24 12P . . . Q 9 -16.081 59.833 20.621 1 89.9 ? C24 12P 416 A 1 HETATM 13 C C23 12P . . . Q 9 -14.998 60.574 19.838 1 88.02 ? C23 12P 416 A 1 HETATM 14 O O22 12P . . . Q 9 -14.838 61.904 20.352 1 86.45 ? O22 12P 416 A 1 HETATM 15 C C21 12P . . . Q 9 -15.839 62.838 19.944 1 77.75 ? C21 12P 416 A 1 HETATM 16 C C20 12P . . . Q 9 -15.146 63.916 19.149 1 82.56 ? C20 12P 416 A 1 HETATM 17 O O19 12P . . . Q 9 -14.005 64.462 19.834 1 79.81 ? O19 12P 416 A 1 HETATM 18 C C18 12P . . . Q 9 -14.323 65.263 20.988 1 86 ? C18 12P 416 A 1 HETATM 19 C C17 12P . . . Q 9 -13.223 66.275 21.332 1 87.84 ? C17 12P 416 A 1 HETATM 20 O O16 12P . . . Q 9 -11.998 65.967 20.653 1 93.31 ? O16 12P 416 A 1 HETATM 21 C C15 12P . . . Q 9 -11.011 65.354 21.493 1 96.79 ? C15 12P 416 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #