data_2RH4 # _model_server_result.job_id hIhnJRt3zAqM7lCzrOcfXQ _model_server_result.datetime_utc '2024-11-25 01:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2RH4 # _exptl.entry_id 2RH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RH4 _cell.length_a 104 _cell.length_b 104 _cell.length_c 123.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -82.266667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id EMO _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EMODIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EMO sing 83 n n C1 C2 EMO doub 84 n y C1 C20 EMO sing 85 n y O1 HO1 EMO sing 86 n n C2 C3 EMO sing 87 n y C2 H2 EMO sing 88 n n C3 O3 EMO sing 89 n n C3 C4 EMO doub 90 n y O3 HO3 EMO sing 91 n n C4 C5 EMO sing 92 n y C4 H4 EMO sing 93 n n C5 C6 EMO sing 94 n n C5 C20 EMO doub 95 n y C6 O6 EMO doub 96 n n C6 C7 EMO sing 97 n n C7 C8 EMO doub 98 n y C7 C18 EMO sing 99 n y C8 C9 EMO sing 100 n y C8 H8 EMO sing 101 n n C9 C10 EMO sing 102 n n C9 C16 EMO doub 103 n y C10 H101 EMO sing 104 n n C10 H102 EMO sing 105 n n C10 H103 EMO sing 106 n n C16 C17 EMO sing 107 n y C16 H16 EMO sing 108 n n C17 O17 EMO sing 109 n n C17 C18 EMO doub 110 n y O17 H17 EMO sing 111 n n C18 C19 EMO sing 112 n n C19 O19 EMO doub 113 n n C19 C20 EMO sing 114 n n # _atom_sites.entry_id 2RH4 _atom_sites.fract_transf_matrix[1][1] 0.009615 _atom_sites.fract_transf_matrix[1][2] 0.005551 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 301 NDP NAP . D 3 EMO A 1 401 401 EMO EMO . E 2 NDP B 1 301 301 NDP NAP . F 4 HOH A 1 402 1 HOH HOH . F 4 HOH A 2 403 3 HOH HOH . F 4 HOH A 3 404 6 HOH HOH . F 4 HOH A 4 405 12 HOH HOH . F 4 HOH A 5 406 13 HOH HOH . F 4 HOH A 6 407 15 HOH HOH . F 4 HOH A 7 408 17 HOH HOH . F 4 HOH A 8 409 20 HOH HOH . F 4 HOH A 9 410 22 HOH HOH . F 4 HOH A 10 411 23 HOH HOH . F 4 HOH A 11 412 24 HOH HOH . F 4 HOH A 12 413 25 HOH HOH . F 4 HOH A 13 414 26 HOH HOH . F 4 HOH A 14 415 28 HOH HOH . F 4 HOH A 15 416 29 HOH HOH . F 4 HOH A 16 417 32 HOH HOH . F 4 HOH A 17 418 33 HOH HOH . F 4 HOH A 18 419 34 HOH HOH . F 4 HOH A 19 420 35 HOH HOH . F 4 HOH A 20 421 36 HOH HOH . F 4 HOH A 21 422 37 HOH HOH . F 4 HOH A 22 423 43 HOH HOH . F 4 HOH A 23 424 44 HOH HOH . F 4 HOH A 24 425 46 HOH HOH . F 4 HOH A 25 426 49 HOH HOH . F 4 HOH A 26 427 50 HOH HOH . F 4 HOH A 27 428 52 HOH HOH . F 4 HOH A 28 429 54 HOH HOH . F 4 HOH A 29 430 56 HOH HOH . F 4 HOH A 30 431 57 HOH HOH . F 4 HOH A 31 432 60 HOH HOH . F 4 HOH A 32 433 61 HOH HOH . F 4 HOH A 33 434 63 HOH HOH . F 4 HOH A 34 435 67 HOH HOH . F 4 HOH A 35 436 68 HOH HOH . F 4 HOH A 36 437 69 HOH HOH . F 4 HOH A 37 438 71 HOH HOH . F 4 HOH A 38 439 72 HOH HOH . F 4 HOH A 39 440 74 HOH HOH . F 4 HOH A 40 441 76 HOH HOH . F 4 HOH A 41 442 80 HOH HOH . F 4 HOH A 42 443 82 HOH HOH . F 4 HOH A 43 444 85 HOH HOH . F 4 HOH A 44 445 86 HOH HOH . F 4 HOH A 45 446 87 HOH HOH . F 4 HOH A 46 447 88 HOH HOH . F 4 HOH A 47 448 89 HOH HOH . F 4 HOH A 48 449 90 HOH HOH . F 4 HOH A 49 450 91 HOH HOH . F 4 HOH A 50 451 93 HOH HOH . F 4 HOH A 51 452 101 HOH HOH . F 4 HOH A 52 453 103 HOH HOH . F 4 HOH A 53 454 104 HOH HOH . F 4 HOH A 54 455 107 HOH HOH . F 4 HOH A 55 456 108 HOH HOH . F 4 HOH A 56 457 110 HOH HOH . F 4 HOH A 57 458 116 HOH HOH . F 4 HOH A 58 459 117 HOH HOH . F 4 HOH A 59 460 119 HOH HOH . F 4 HOH A 60 461 120 HOH HOH . F 4 HOH A 61 462 121 HOH HOH . F 4 HOH A 62 463 124 HOH HOH . F 4 HOH A 63 464 126 HOH HOH . F 4 HOH A 64 465 127 HOH HOH . F 4 HOH A 65 466 131 HOH HOH . F 4 HOH A 66 467 134 HOH HOH . F 4 HOH A 67 468 135 HOH HOH . F 4 HOH A 68 469 136 HOH HOH . F 4 HOH A 69 470 137 HOH HOH . F 4 HOH A 70 471 138 HOH HOH . F 4 HOH A 71 472 140 HOH HOH . F 4 HOH A 72 473 141 HOH HOH . F 4 HOH A 73 474 143 HOH HOH . F 4 HOH A 74 475 144 HOH HOH . F 4 HOH A 75 476 147 HOH HOH . F 4 HOH A 76 477 148 HOH HOH . F 4 HOH A 77 478 152 HOH HOH . F 4 HOH A 78 479 153 HOH HOH . F 4 HOH A 79 480 156 HOH HOH . F 4 HOH A 80 481 159 HOH HOH . F 4 HOH A 81 482 162 HOH HOH . F 4 HOH A 82 483 164 HOH HOH . F 4 HOH A 83 484 165 HOH HOH . F 4 HOH A 84 485 166 HOH HOH . F 4 HOH A 85 486 168 HOH HOH . F 4 HOH A 86 487 170 HOH HOH . F 4 HOH A 87 488 172 HOH HOH . F 4 HOH A 88 489 174 HOH HOH . F 4 HOH A 89 490 175 HOH HOH . F 4 HOH A 90 491 176 HOH HOH . F 4 HOH A 91 492 177 HOH HOH . F 4 HOH A 92 493 182 HOH HOH . F 4 HOH A 93 494 186 HOH HOH . F 4 HOH A 94 495 188 HOH HOH . F 4 HOH A 95 496 189 HOH HOH . F 4 HOH A 96 497 190 HOH HOH . F 4 HOH A 97 498 191 HOH HOH . F 4 HOH A 98 499 192 HOH HOH . F 4 HOH A 99 500 193 HOH HOH . F 4 HOH A 100 501 195 HOH HOH . F 4 HOH A 101 502 196 HOH HOH . F 4 HOH A 102 503 197 HOH HOH . F 4 HOH A 103 504 198 HOH HOH . F 4 HOH A 104 505 199 HOH HOH . F 4 HOH A 105 506 200 HOH HOH . F 4 HOH A 106 507 201 HOH HOH . F 4 HOH A 107 508 202 HOH HOH . F 4 HOH A 108 509 203 HOH HOH . F 4 HOH A 109 510 204 HOH HOH . F 4 HOH A 110 511 205 HOH HOH . F 4 HOH A 111 512 206 HOH HOH . F 4 HOH A 112 513 207 HOH HOH . F 4 HOH A 113 514 208 HOH HOH . F 4 HOH A 114 515 209 HOH HOH . F 4 HOH A 115 516 210 HOH HOH . F 4 HOH A 116 517 213 HOH HOH . F 4 HOH A 117 518 214 HOH HOH . F 4 HOH A 118 519 215 HOH HOH . F 4 HOH A 119 520 216 HOH HOH . F 4 HOH A 120 521 217 HOH HOH . F 4 HOH A 121 522 218 HOH HOH . F 4 HOH A 122 523 219 HOH HOH . F 4 HOH A 123 524 220 HOH HOH . F 4 HOH A 124 525 221 HOH HOH . F 4 HOH A 125 526 222 HOH HOH . F 4 HOH A 126 527 223 HOH HOH . F 4 HOH A 127 528 228 HOH HOH . F 4 HOH A 128 529 271 HOH HOH . F 4 HOH A 129 530 272 HOH HOH . F 4 HOH A 130 531 273 HOH HOH . F 4 HOH A 131 532 275 HOH HOH . F 4 HOH A 132 533 276 HOH HOH . F 4 HOH A 133 534 277 HOH HOH . F 4 HOH A 134 535 278 HOH HOH . F 4 HOH A 135 536 279 HOH HOH . F 4 HOH A 136 537 280 HOH HOH . F 4 HOH A 137 538 281 HOH HOH . F 4 HOH A 138 539 282 HOH HOH . F 4 HOH A 139 540 283 HOH HOH . F 4 HOH A 140 541 284 HOH HOH . F 4 HOH A 141 542 285 HOH HOH . F 4 HOH A 142 543 286 HOH HOH . F 4 HOH A 143 544 288 HOH HOH . F 4 HOH A 144 545 289 HOH HOH . F 4 HOH A 145 546 290 HOH HOH . G 4 HOH B 1 302 211 HOH HOH . G 4 HOH B 2 303 2 HOH HOH . G 4 HOH B 3 304 4 HOH HOH . G 4 HOH B 4 305 7 HOH HOH . G 4 HOH B 5 306 8 HOH HOH . G 4 HOH B 6 307 9 HOH HOH . G 4 HOH B 7 308 10 HOH HOH . G 4 HOH B 8 309 11 HOH HOH . G 4 HOH B 9 310 14 HOH HOH . G 4 HOH B 10 311 16 HOH HOH . G 4 HOH B 11 312 18 HOH HOH . G 4 HOH B 12 313 19 HOH HOH . G 4 HOH B 13 314 21 HOH HOH . G 4 HOH B 14 315 27 HOH HOH . G 4 HOH B 15 316 30 HOH HOH . G 4 HOH B 16 317 31 HOH HOH . G 4 HOH B 17 318 38 HOH HOH . G 4 HOH B 18 319 39 HOH HOH . G 4 HOH B 19 320 40 HOH HOH . G 4 HOH B 20 321 41 HOH HOH . G 4 HOH B 21 322 42 HOH HOH . G 4 HOH B 22 323 45 HOH HOH . G 4 HOH B 23 324 47 HOH HOH . G 4 HOH B 24 325 48 HOH HOH . G 4 HOH B 25 326 51 HOH HOH . G 4 HOH B 26 327 53 HOH HOH . G 4 HOH B 27 328 55 HOH HOH . G 4 HOH B 28 329 58 HOH HOH . G 4 HOH B 29 330 59 HOH HOH . G 4 HOH B 30 331 62 HOH HOH . G 4 HOH B 31 332 64 HOH HOH . G 4 HOH B 32 333 65 HOH HOH . G 4 HOH B 33 334 66 HOH HOH . G 4 HOH B 34 335 70 HOH HOH . G 4 HOH B 35 336 73 HOH HOH . G 4 HOH B 36 337 75 HOH HOH . G 4 HOH B 37 338 77 HOH HOH . G 4 HOH B 38 339 78 HOH HOH . G 4 HOH B 39 340 79 HOH HOH . G 4 HOH B 40 341 81 HOH HOH . G 4 HOH B 41 342 83 HOH HOH . G 4 HOH B 42 343 84 HOH HOH . G 4 HOH B 43 344 92 HOH HOH . G 4 HOH B 44 345 94 HOH HOH . G 4 HOH B 45 346 95 HOH HOH . G 4 HOH B 46 347 96 HOH HOH . G 4 HOH B 47 348 97 HOH HOH . G 4 HOH B 48 349 98 HOH HOH . G 4 HOH B 49 350 99 HOH HOH . G 4 HOH B 50 351 100 HOH HOH . G 4 HOH B 51 352 102 HOH HOH . G 4 HOH B 52 353 105 HOH HOH . G 4 HOH B 53 354 106 HOH HOH . G 4 HOH B 54 355 109 HOH HOH . G 4 HOH B 55 356 111 HOH HOH . G 4 HOH B 56 357 112 HOH HOH . G 4 HOH B 57 358 113 HOH HOH . G 4 HOH B 58 359 114 HOH HOH . G 4 HOH B 59 360 115 HOH HOH . G 4 HOH B 60 361 128 HOH HOH . G 4 HOH B 61 362 129 HOH HOH . G 4 HOH B 62 363 130 HOH HOH . G 4 HOH B 63 364 139 HOH HOH . G 4 HOH B 64 365 142 HOH HOH . G 4 HOH B 65 366 149 HOH HOH . G 4 HOH B 66 367 150 HOH HOH . G 4 HOH B 67 368 151 HOH HOH . G 4 HOH B 68 369 154 HOH HOH . G 4 HOH B 69 370 157 HOH HOH . G 4 HOH B 70 371 158 HOH HOH . G 4 HOH B 71 372 160 HOH HOH . G 4 HOH B 72 373 161 HOH HOH . G 4 HOH B 73 374 167 HOH HOH . G 4 HOH B 74 375 178 HOH HOH . G 4 HOH B 75 376 179 HOH HOH . G 4 HOH B 76 377 183 HOH HOH . G 4 HOH B 77 378 184 HOH HOH . G 4 HOH B 78 379 185 HOH HOH . G 4 HOH B 79 380 187 HOH HOH . G 4 HOH B 80 381 212 HOH HOH . G 4 HOH B 81 382 224 HOH HOH . G 4 HOH B 82 383 225 HOH HOH . G 4 HOH B 83 384 226 HOH HOH . G 4 HOH B 84 385 232 HOH HOH . G 4 HOH B 85 386 233 HOH HOH . G 4 HOH B 86 387 234 HOH HOH . G 4 HOH B 87 388 235 HOH HOH . G 4 HOH B 88 389 236 HOH HOH . G 4 HOH B 89 390 238 HOH HOH . G 4 HOH B 90 391 239 HOH HOH . G 4 HOH B 91 392 240 HOH HOH . G 4 HOH B 92 393 241 HOH HOH . G 4 HOH B 93 394 242 HOH HOH . G 4 HOH B 94 395 244 HOH HOH . G 4 HOH B 95 396 245 HOH HOH . G 4 HOH B 96 397 246 HOH HOH . G 4 HOH B 97 398 247 HOH HOH . G 4 HOH B 98 399 249 HOH HOH . G 4 HOH B 99 400 250 HOH HOH . G 4 HOH B 100 401 251 HOH HOH . G 4 HOH B 101 402 252 HOH HOH . G 4 HOH B 102 403 253 HOH HOH . G 4 HOH B 103 404 254 HOH HOH . G 4 HOH B 104 405 255 HOH HOH . G 4 HOH B 105 406 256 HOH HOH . G 4 HOH B 106 407 257 HOH HOH . G 4 HOH B 107 408 258 HOH HOH . G 4 HOH B 108 409 259 HOH HOH . G 4 HOH B 109 410 260 HOH HOH . G 4 HOH B 110 411 261 HOH HOH . G 4 HOH B 111 412 263 HOH HOH . G 4 HOH B 112 413 264 HOH HOH . G 4 HOH B 113 414 265 HOH HOH . G 4 HOH B 114 415 266 HOH HOH . G 4 HOH B 115 416 267 HOH HOH . G 4 HOH B 116 417 268 HOH HOH . G 4 HOH B 117 418 287 HOH HOH . G 4 HOH B 118 419 291 HOH HOH . G 4 HOH B 119 420 292 HOH HOH . G 4 HOH B 120 421 293 HOH HOH . G 4 HOH B 121 422 294 HOH HOH . G 4 HOH B 122 423 295 HOH HOH . G 4 HOH B 123 424 296 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EMO . . . D 3 51.289 -3.197 -33.282 1 73 ? C1 EMO 401 A 1 HETATM 2 O O1 EMO . . . D 3 52.488 -3.161 -33.93 1 73.12 ? O1 EMO 401 A 1 HETATM 3 C C2 EMO . . . D 3 50.16 -2.616 -33.925 1 72.91 ? C2 EMO 401 A 1 HETATM 4 C C3 EMO . . . D 3 48.868 -2.605 -33.334 1 73.49 ? C3 EMO 401 A 1 HETATM 5 O O3 EMO . . . D 3 47.693 -1.982 -34.038 1 73.92 ? O3 EMO 401 A 1 HETATM 6 C C4 EMO . . . D 3 48.697 -3.199 -32.051 1 72.91 ? C4 EMO 401 A 1 HETATM 7 C C5 EMO . . . D 3 49.782 -3.801 -31.351 1 73.41 ? C5 EMO 401 A 1 HETATM 8 C C6 EMO . . . D 3 49.542 -4.424 -29.97 1 73.69 ? C6 EMO 401 A 1 HETATM 9 O O6 EMO . . . D 3 48.515 -4.253 -29.338 1 74.87 ? O6 EMO 401 A 1 HETATM 10 C C7 EMO . . . D 3 50.59 -5.468 -29.58 1 73.77 ? C7 EMO 401 A 1 HETATM 11 C C8 EMO . . . D 3 50.264 -6.449 -28.598 1 73.36 ? C8 EMO 401 A 1 HETATM 12 C C9 EMO . . . D 3 51.186 -7.446 -28.183 1 73.79 ? C9 EMO 401 A 1 HETATM 13 C C10 EMO . . . D 3 50.841 -8.369 -27.25 1 72.21 ? C10 EMO 401 A 1 HETATM 14 C C16 EMO . . . D 3 52.475 -7.444 -28.781 1 74.33 ? C16 EMO 401 A 1 HETATM 15 C C17 EMO . . . D 3 52.876 -6.496 -29.766 1 74.56 ? C17 EMO 401 A 1 HETATM 16 O O17 EMO . . . D 3 54.143 -6.595 -30.27 1 75.15 ? O17 EMO 401 A 1 HETATM 17 C C18 EMO . . . D 3 51.914 -5.49 -30.172 1 74.11 ? C18 EMO 401 A 1 HETATM 18 C C19 EMO . . . D 3 52.257 -4.445 -31.226 1 73.8 ? C19 EMO 401 A 1 HETATM 19 O O19 EMO . . . D 3 53.43 -4.182 -31.492 1 74.72 ? O19 EMO 401 A 1 HETATM 20 C C20 EMO . . . D 3 51.096 -3.799 -31.972 1 73.51 ? C20 EMO 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #