data_2RHD # _model_server_result.job_id k_G8Qn_SGSKiQf72TjB-Bw _model_server_result.datetime_utc '2025-02-28 23:11:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 2RHD # _exptl.entry_id 2RHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RHD _cell.length_a 107.385 _cell.length_b 107.385 _cell.length_c 45.226 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 23 1_555 B MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A OD2 ASP 95 A ASP 95 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 A OD1 ASP 95 A ASP 95 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 B MG MG . A MG 1001 1_555 E O3B GDP . A GDP 3800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 B MG MG . A MG 1001 1_555 F O HOH . A HOH 3808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 B MG MG . A MG 1001 1_555 F O HOH . A HOH 3809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc7 B MG MG . A MG 1001 1_555 F O HOH . A HOH 3834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 B MG MG . A MG 1001 1_555 F O HOH . A HOH 3861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc9 C MG MG . A MG 1002 1_555 F O HOH . A HOH 3806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 C MG MG . A MG 1002 1_555 F O HOH . A HOH 3831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc11 D MG MG . A MG 1003 1_555 F O HOH . A HOH 3816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2RHD _atom_sites.fract_transf_matrix[1][1] 0.009312 _atom_sites.fract_transf_matrix[1][2] 0.005376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1001 1001 MG MG . C 2 MG A 1 1002 1002 MG MG . D 2 MG A 1 1003 1003 MG MG . E 3 GDP A 1 3800 3800 GDP GDP . F 4 HOH A 1 3801 3801 HOH HOH . F 4 HOH A 2 3802 3802 HOH HOH . F 4 HOH A 3 3803 3803 HOH HOH . F 4 HOH A 4 3804 3804 HOH HOH . F 4 HOH A 5 3805 3805 HOH HOH . F 4 HOH A 6 3806 3806 HOH HOH . F 4 HOH A 7 3807 3807 HOH HOH . F 4 HOH A 8 3808 3808 HOH HOH . F 4 HOH A 9 3809 3809 HOH HOH . F 4 HOH A 10 3810 3810 HOH HOH . F 4 HOH A 11 3811 3811 HOH HOH . F 4 HOH A 12 3812 3812 HOH HOH . F 4 HOH A 13 3813 3813 HOH HOH . F 4 HOH A 14 3814 3814 HOH HOH . F 4 HOH A 15 3815 3815 HOH HOH . F 4 HOH A 16 3816 3816 HOH HOH . F 4 HOH A 17 3817 3817 HOH HOH . F 4 HOH A 18 3818 3818 HOH HOH . F 4 HOH A 19 3819 3819 HOH HOH . F 4 HOH A 20 3820 3820 HOH HOH . F 4 HOH A 21 3821 3821 HOH HOH . F 4 HOH A 22 3822 3822 HOH HOH . F 4 HOH A 23 3823 3823 HOH HOH . F 4 HOH A 24 3824 3824 HOH HOH . F 4 HOH A 25 3825 3825 HOH HOH . F 4 HOH A 26 3826 3826 HOH HOH . F 4 HOH A 27 3827 3827 HOH HOH . F 4 HOH A 28 3828 3828 HOH HOH . F 4 HOH A 29 3829 3829 HOH HOH . F 4 HOH A 30 3830 3830 HOH HOH . F 4 HOH A 31 3831 3831 HOH HOH . F 4 HOH A 32 3832 3832 HOH HOH . F 4 HOH A 33 3833 3833 HOH HOH . F 4 HOH A 34 3834 3834 HOH HOH . F 4 HOH A 35 3835 3835 HOH HOH . F 4 HOH A 36 3836 3836 HOH HOH . F 4 HOH A 37 3837 3837 HOH HOH . F 4 HOH A 38 3838 3838 HOH HOH . F 4 HOH A 39 3839 3839 HOH HOH . F 4 HOH A 40 3840 3840 HOH HOH . F 4 HOH A 41 3841 3841 HOH HOH . F 4 HOH A 42 3842 3842 HOH HOH . F 4 HOH A 43 3843 3843 HOH HOH . F 4 HOH A 44 3844 3844 HOH HOH . F 4 HOH A 45 3845 3845 HOH HOH . F 4 HOH A 46 3846 3846 HOH HOH . F 4 HOH A 47 3847 3847 HOH HOH . F 4 HOH A 48 3848 3848 HOH HOH . F 4 HOH A 49 3849 3849 HOH HOH . F 4 HOH A 50 3850 3850 HOH HOH . F 4 HOH A 51 3851 3851 HOH HOH . F 4 HOH A 52 3852 3852 HOH HOH . F 4 HOH A 53 3853 3853 HOH HOH . F 4 HOH A 54 3854 3854 HOH HOH . F 4 HOH A 55 3855 3855 HOH HOH . F 4 HOH A 56 3856 3856 HOH HOH . F 4 HOH A 57 3857 3857 HOH HOH . F 4 HOH A 58 3858 3858 HOH HOH . F 4 HOH A 59 3859 3859 HOH HOH . F 4 HOH A 60 3860 3860 HOH HOH . F 4 HOH A 61 3861 3861 HOH HOH . F 4 HOH A 62 3862 3862 HOH HOH . F 4 HOH A 63 3863 3863 HOH HOH . F 4 HOH A 64 3864 3864 HOH HOH . F 4 HOH A 65 3865 3865 HOH HOH . F 4 HOH A 66 3866 3866 HOH HOH . F 4 HOH A 67 3867 3867 HOH HOH . F 4 HOH A 68 3868 3868 HOH HOH . F 4 HOH A 69 3869 3869 HOH HOH . F 4 HOH A 70 3870 3870 HOH HOH . F 4 HOH A 71 3871 3871 HOH HOH . F 4 HOH A 72 3872 3872 HOH HOH . F 4 HOH A 73 3873 3873 HOH HOH . F 4 HOH A 74 3874 3874 HOH HOH . F 4 HOH A 75 3875 3875 HOH HOH . F 4 HOH A 76 3876 3876 HOH HOH . F 4 HOH A 77 3877 3877 HOH HOH . F 4 HOH A 78 3878 3878 HOH HOH . F 4 HOH A 79 3879 3879 HOH HOH . F 4 HOH A 80 3880 3880 HOH HOH . F 4 HOH A 81 3881 3881 HOH HOH . F 4 HOH A 82 3882 3882 HOH HOH . F 4 HOH A 83 3883 3883 HOH HOH . F 4 HOH A 84 3884 3884 HOH HOH . F 4 HOH A 85 3885 3885 HOH HOH . F 4 HOH A 86 3886 3886 HOH HOH . F 4 HOH A 87 3887 3887 HOH HOH . F 4 HOH A 88 3888 3888 HOH HOH . F 4 HOH A 89 3889 3889 HOH HOH . F 4 HOH A 90 3890 3890 HOH HOH . F 4 HOH A 91 3891 3891 HOH HOH . F 4 HOH A 92 3892 3892 HOH HOH . F 4 HOH A 93 3893 3893 HOH HOH . F 4 HOH A 94 3894 3894 HOH HOH . F 4 HOH A 95 3895 3895 HOH HOH . F 4 HOH A 96 3896 3896 HOH HOH . F 4 HOH A 97 3897 3897 HOH HOH . F 4 HOH A 98 3898 3898 HOH HOH . F 4 HOH A 99 3899 3899 HOH HOH . F 4 HOH A 100 3900 3900 HOH HOH . F 4 HOH A 101 3901 3901 HOH HOH . F 4 HOH A 102 3902 3902 HOH HOH . F 4 HOH A 103 3903 3903 HOH HOH . F 4 HOH A 104 3904 3904 HOH HOH . F 4 HOH A 105 3905 3905 HOH HOH . F 4 HOH A 106 3906 3906 HOH HOH . F 4 HOH A 107 3907 3907 HOH HOH . F 4 HOH A 108 3908 3908 HOH HOH . F 4 HOH A 109 3909 3909 HOH HOH . F 4 HOH A 110 3910 3910 HOH HOH . F 4 HOH A 111 3911 3911 HOH HOH . F 4 HOH A 112 3912 3912 HOH HOH . F 4 HOH A 113 3913 3913 HOH HOH . F 4 HOH A 114 3914 3914 HOH HOH . F 4 HOH A 115 3915 3915 HOH HOH . F 4 HOH A 116 3916 3916 HOH HOH . F 4 HOH A 117 3917 3917 HOH HOH . F 4 HOH A 118 3918 3918 HOH HOH . F 4 HOH A 119 3919 3919 HOH HOH . F 4 HOH A 120 3920 3920 HOH HOH . F 4 HOH A 121 3921 3921 HOH HOH . F 4 HOH A 122 3922 3922 HOH HOH . F 4 HOH A 123 3923 3923 HOH HOH . F 4 HOH A 124 3924 3924 HOH HOH . F 4 HOH A 125 3925 3925 HOH HOH . F 4 HOH A 126 3926 3926 HOH HOH . F 4 HOH A 127 3927 3927 HOH HOH . F 4 HOH A 128 3928 3928 HOH HOH . F 4 HOH A 129 3929 3929 HOH HOH . F 4 HOH A 130 3930 3930 HOH HOH . F 4 HOH A 131 3931 3931 HOH HOH . F 4 HOH A 132 3932 3932 HOH HOH . F 4 HOH A 133 3933 3933 HOH HOH . F 4 HOH A 134 3934 3934 HOH HOH . F 4 HOH A 135 3935 3935 HOH HOH . F 4 HOH A 136 3936 3936 HOH HOH . F 4 HOH A 137 3937 3937 HOH HOH . F 4 HOH A 138 3938 3938 HOH HOH . F 4 HOH A 139 3939 3939 HOH HOH . F 4 HOH A 140 3940 3940 HOH HOH . F 4 HOH A 141 3941 3941 HOH HOH . F 4 HOH A 142 3942 3942 HOH HOH . F 4 HOH A 143 3943 3943 HOH HOH . F 4 HOH A 144 3944 3944 HOH HOH . F 4 HOH A 145 3945 3945 HOH HOH . F 4 HOH A 146 3946 3946 HOH HOH . F 4 HOH A 147 3947 3947 HOH HOH . F 4 HOH A 148 3948 3948 HOH HOH . F 4 HOH A 149 3949 3949 HOH HOH . F 4 HOH A 150 3950 3950 HOH HOH . F 4 HOH A 151 3951 3951 HOH HOH . F 4 HOH A 152 3952 3952 HOH HOH . F 4 HOH A 153 3953 3953 HOH HOH . F 4 HOH A 154 3954 3954 HOH HOH . F 4 HOH A 155 3955 3955 HOH HOH . F 4 HOH A 156 3956 3956 HOH HOH . F 4 HOH A 157 3957 3957 HOH HOH . F 4 HOH A 158 3958 3958 HOH HOH . F 4 HOH A 159 3959 3959 HOH HOH . F 4 HOH A 160 3960 3960 HOH HOH . F 4 HOH A 161 3963 3963 HOH HOH . F 4 HOH A 162 3964 3964 HOH HOH . F 4 HOH A 163 3965 3965 HOH HOH . F 4 HOH A 164 3966 3966 HOH HOH . F 4 HOH A 165 3967 3967 HOH HOH . F 4 HOH A 166 3969 3969 HOH HOH . F 4 HOH A 167 3971 3971 HOH HOH . F 4 HOH A 168 3972 3972 HOH HOH . F 4 HOH A 169 3973 3973 HOH HOH . F 4 HOH A 170 3974 3974 HOH HOH . F 4 HOH A 171 3975 3975 HOH HOH . F 4 HOH A 172 3976 3976 HOH HOH . F 4 HOH A 173 3979 3979 HOH HOH . F 4 HOH A 174 3980 3980 HOH HOH . F 4 HOH A 175 3981 3981 HOH HOH . F 4 HOH A 176 3982 3982 HOH HOH . F 4 HOH A 177 3983 3983 HOH HOH . F 4 HOH A 178 3984 3984 HOH HOH . F 4 HOH A 179 3985 3985 HOH HOH . F 4 HOH A 180 3986 3986 HOH HOH . F 4 HOH A 181 3987 3987 HOH HOH . F 4 HOH A 182 3988 3988 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 53.671 _atom_site.Cartn_y 31.012 _atom_site.Cartn_z 20.602 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 5.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #