data_2RHO # _model_server_result.job_id MvU6Xb-cMnPBExDsfvFlow _model_server_result.datetime_utc '2025-02-27 00:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2RHO # _exptl.entry_id 2RHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RHO _cell.length_a 82.295 _cell.length_b 97.164 _cell.length_c 134.719 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 161 n n PG S1G GSP doub 162 n n PG O2G GSP sing 163 n n PG O3G GSP sing 164 n n O3B PB GSP sing 165 n n O2G HOG2 GSP sing 166 n n O3G HOG3 GSP sing 167 n n PB O1B GSP doub 168 n n PB O2B GSP sing 169 n n PB O3A GSP sing 170 n n O2B HOB2 GSP sing 171 n n PA O1A GSP doub 172 n n PA O2A GSP sing 173 n n PA O3A GSP sing 174 n n PA O5' GSP sing 175 n n O2A HOA2 GSP sing 176 n n O5' C5' GSP sing 177 n n C5' C4' GSP sing 178 n n C5' "H5'1" GSP sing 179 n n C5' "H5'2" GSP sing 180 n n C4' O4' GSP sing 181 n n C4' C3' GSP sing 182 n n C4' H4' GSP sing 183 n n O4' C1' GSP sing 184 n n C3' O3' GSP sing 185 n n C3' C2' GSP sing 186 n n C3' H3' GSP sing 187 n n O3' HO3' GSP sing 188 n n C2' O2' GSP sing 189 n n C2' C1' GSP sing 190 n n C2' H2' GSP sing 191 n n O2' HO2' GSP sing 192 n n C1' N9 GSP sing 193 n n C1' H1' GSP sing 194 n n N9 C8 GSP sing 195 n y N9 C4 GSP sing 196 n y C8 N7 GSP doub 197 n y C8 H8 GSP sing 198 n n N7 C5 GSP sing 199 n y C5 C6 GSP sing 200 n n C5 C4 GSP doub 201 n y C6 O6 GSP doub 202 n n C6 N1 GSP sing 203 n n N1 C2 GSP sing 204 n n N1 HN1 GSP sing 205 n n C2 N2 GSP sing 206 n n C2 N3 GSP doub 207 n n N2 HN21 GSP sing 208 n n N2 HN22 GSP sing 209 n n N3 C4 GSP sing 210 n n # _atom_sites.entry_id 2RHO _atom_sites.fract_transf_matrix[1][1] 0.012151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSP A 1 501 501 GSP GSP . D 3 GDP B 1 501 501 GDP GDP . E 4 HOH A 1 502 3 HOH HOH . E 4 HOH A 2 503 5 HOH HOH . E 4 HOH A 3 504 6 HOH HOH . E 4 HOH A 4 505 8 HOH HOH . E 4 HOH A 5 506 10 HOH HOH . E 4 HOH A 6 507 13 HOH HOH . E 4 HOH A 7 508 15 HOH HOH . E 4 HOH A 8 509 17 HOH HOH . E 4 HOH A 9 510 18 HOH HOH . E 4 HOH A 10 511 19 HOH HOH . E 4 HOH A 11 512 22 HOH HOH . E 4 HOH A 12 513 23 HOH HOH . E 4 HOH A 13 514 25 HOH HOH . E 4 HOH A 14 515 27 HOH HOH . E 4 HOH A 15 516 28 HOH HOH . E 4 HOH A 16 517 31 HOH HOH . E 4 HOH A 17 518 33 HOH HOH . E 4 HOH A 18 519 35 HOH HOH . E 4 HOH A 19 520 36 HOH HOH . E 4 HOH A 20 521 37 HOH HOH . E 4 HOH A 21 522 39 HOH HOH . E 4 HOH A 22 523 40 HOH HOH . E 4 HOH A 23 524 44 HOH HOH . E 4 HOH A 24 525 49 HOH HOH . E 4 HOH A 25 526 50 HOH HOH . E 4 HOH A 26 527 51 HOH HOH . E 4 HOH A 27 528 52 HOH HOH . E 4 HOH A 28 529 53 HOH HOH . E 4 HOH A 29 530 55 HOH HOH . E 4 HOH A 30 531 57 HOH HOH . E 4 HOH A 31 532 58 HOH HOH . E 4 HOH A 32 533 59 HOH HOH . E 4 HOH A 33 534 65 HOH HOH . E 4 HOH A 34 535 67 HOH HOH . E 4 HOH A 35 536 68 HOH HOH . E 4 HOH A 36 537 69 HOH HOH . E 4 HOH A 37 538 72 HOH HOH . E 4 HOH A 38 539 73 HOH HOH . E 4 HOH A 39 540 75 HOH HOH . E 4 HOH A 40 541 76 HOH HOH . E 4 HOH A 41 542 77 HOH HOH . E 4 HOH A 42 543 79 HOH HOH . E 4 HOH A 43 544 80 HOH HOH . E 4 HOH A 44 545 82 HOH HOH . E 4 HOH A 45 546 83 HOH HOH . E 4 HOH A 46 547 84 HOH HOH . E 4 HOH A 47 548 88 HOH HOH . E 4 HOH A 48 549 90 HOH HOH . E 4 HOH A 49 550 91 HOH HOH . E 4 HOH A 50 551 92 HOH HOH . E 4 HOH A 51 552 93 HOH HOH . E 4 HOH A 52 553 94 HOH HOH . E 4 HOH A 53 554 95 HOH HOH . E 4 HOH A 54 555 97 HOH HOH . E 4 HOH A 55 556 99 HOH HOH . F 4 HOH B 1 502 1 HOH HOH . F 4 HOH B 2 503 2 HOH HOH . F 4 HOH B 3 504 4 HOH HOH . F 4 HOH B 4 505 7 HOH HOH . F 4 HOH B 5 506 9 HOH HOH . F 4 HOH B 6 507 11 HOH HOH . F 4 HOH B 7 508 12 HOH HOH . F 4 HOH B 8 509 14 HOH HOH . F 4 HOH B 9 510 16 HOH HOH . F 4 HOH B 10 511 20 HOH HOH . F 4 HOH B 11 512 21 HOH HOH . F 4 HOH B 12 513 24 HOH HOH . F 4 HOH B 13 514 26 HOH HOH . F 4 HOH B 14 515 29 HOH HOH . F 4 HOH B 15 516 30 HOH HOH . F 4 HOH B 16 517 32 HOH HOH . F 4 HOH B 17 518 34 HOH HOH . F 4 HOH B 18 519 38 HOH HOH . F 4 HOH B 19 520 41 HOH HOH . F 4 HOH B 20 521 42 HOH HOH . F 4 HOH B 21 522 43 HOH HOH . F 4 HOH B 22 523 45 HOH HOH . F 4 HOH B 23 524 46 HOH HOH . F 4 HOH B 24 525 47 HOH HOH . F 4 HOH B 25 526 48 HOH HOH . F 4 HOH B 26 527 54 HOH HOH . F 4 HOH B 27 528 56 HOH HOH . F 4 HOH B 28 529 60 HOH HOH . F 4 HOH B 29 530 61 HOH HOH . F 4 HOH B 30 531 62 HOH HOH . F 4 HOH B 31 532 63 HOH HOH . F 4 HOH B 32 533 64 HOH HOH . F 4 HOH B 33 534 66 HOH HOH . F 4 HOH B 34 535 70 HOH HOH . F 4 HOH B 35 536 71 HOH HOH . F 4 HOH B 36 537 74 HOH HOH . F 4 HOH B 37 538 78 HOH HOH . F 4 HOH B 38 539 81 HOH HOH . F 4 HOH B 39 540 85 HOH HOH . F 4 HOH B 40 541 86 HOH HOH . F 4 HOH B 41 542 87 HOH HOH . F 4 HOH B 42 543 89 HOH HOH . F 4 HOH B 43 544 96 HOH HOH . F 4 HOH B 44 545 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . C 2 89.682 19.214 72.559 1 48.91 ? PG GSP 501 A 1 HETATM 2 O O3B GSP . . . C 2 88.505 18.506 71.692 1 48.94 ? O3B GSP 501 A 1 HETATM 3 S S1G GSP . . . C 2 89.178 20.839 72.729 1 59.67 ? S1G GSP 501 A 1 HETATM 4 O O2G GSP . . . C 2 91.032 19.186 71.819 1 46.26 ? O2G GSP 501 A 1 HETATM 5 O O3G GSP . . . C 2 89.585 18.788 74.009 1 48.69 ? O3G GSP 501 A 1 HETATM 6 P PB GSP . . . C 2 88.177 18.581 70.108 1 44.31 ? PB GSP 501 A 1 HETATM 7 O O1B GSP . . . C 2 88.402 19.813 69.315 1 43.91 ? O1B GSP 501 A 1 HETATM 8 O O2B GSP . . . C 2 86.747 18.139 69.976 1 46.81 ? O2B GSP 501 A 1 HETATM 9 P PA GSP . . . C 2 89.228 17.04 68.044 1 41.89 ? PA GSP 501 A 1 HETATM 10 O O1A GSP . . . C 2 90.433 17.56 67.387 1 47 ? O1A GSP 501 A 1 HETATM 11 O O2A GSP . . . C 2 88.089 17.489 67.209 1 43.86 ? O2A GSP 501 A 1 HETATM 12 O O3A GSP . . . C 2 89.171 17.444 69.574 1 41.91 ? O3A GSP 501 A 1 HETATM 13 O O5' GSP . . . C 2 89.385 15.456 68.087 1 41.44 ? O5' GSP 501 A 1 HETATM 14 C C5' GSP . . . C 2 88.281 14.641 68.4 1 41.87 ? C5' GSP 501 A 1 HETATM 15 C C4' GSP . . . C 2 88.276 13.377 67.553 1 41.69 ? C4' GSP 501 A 1 HETATM 16 O O4' GSP . . . C 2 88.057 13.673 66.185 1 41.41 ? O4' GSP 501 A 1 HETATM 17 C C3' GSP . . . C 2 89.607 12.612 67.637 1 40.83 ? C3' GSP 501 A 1 HETATM 18 O O3' GSP . . . C 2 89.572 11.629 68.66 1 42.48 ? O3' GSP 501 A 1 HETATM 19 C C2' GSP . . . C 2 89.735 12.018 66.257 1 39.84 ? C2' GSP 501 A 1 HETATM 20 O O2' GSP . . . C 2 89.04 10.82 66.135 1 37.68 ? O2' GSP 501 A 1 HETATM 21 C C1' GSP . . . C 2 89.011 12.975 65.36 1 42.73 ? C1' GSP 501 A 1 HETATM 22 N N9 GSP . . . C 2 89.908 13.93 64.69 1 43.13 ? N9 GSP 501 A 1 HETATM 23 C C8 GSP . . . C 2 91.06 14.536 65.137 1 43.81 ? C8 GSP 501 A 1 HETATM 24 N N7 GSP . . . C 2 91.504 15.401 64.176 1 44.11 ? N7 GSP 501 A 1 HETATM 25 C C5 GSP . . . C 2 90.649 15.352 63.12 1 45.03 ? C5 GSP 501 A 1 HETATM 26 C C6 GSP . . . C 2 90.579 15.987 61.892 1 45 ? C6 GSP 501 A 1 HETATM 27 O O6 GSP . . . C 2 91.43 16.804 61.566 1 44.95 ? O6 GSP 501 A 1 HETATM 28 N N1 GSP . . . C 2 89.531 15.714 61.021 1 46.19 ? N1 GSP 501 A 1 HETATM 29 C C2 GSP . . . C 2 88.557 14.807 61.389 1 44.36 ? C2 GSP 501 A 1 HETATM 30 N N2 GSP . . . C 2 87.527 14.5 60.618 1 43.27 ? N2 GSP 501 A 1 HETATM 31 N N3 GSP . . . C 2 88.64 14.201 62.602 1 44.84 ? N3 GSP 501 A 1 HETATM 32 C C4 GSP . . . C 2 89.647 14.447 63.452 1 44.84 ? C4 GSP 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #