data_2RI4 # _model_server_result.job_id JuL0NSsz9jOPFp4l3tPs-Q _model_server_result.datetime_utc '2024-11-05 19:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ri4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":147}' # _entry.id 2RI4 # _exptl.entry_id 2RI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.64 _cell.angle_beta 91.9 _cell.angle_gamma 108.94 _cell.entry_id 2RI4 _cell.length_a 52.692 _cell.length_b 68.325 _cell.length_c 95.597 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,Q,R,S,T 1 1 E,F,G,H,M,N,O,P,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 I FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 B NE2 HIS 91 B HIS 92 1_555 J FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 K FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 K FE HEM . C HEM 142 1_555 S O HOH . C HOH 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc5 D NE2 HIS 91 D HIS 92 1_555 L FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 L FE HEM . D HEM 147 1_555 T O HOH . D HOH 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 E NE2 HIS 87 I HIS 87 1_555 M FE HEM . I HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc8 M FE HEM . I HEM 142 1_555 U O HOH . I HOH 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? metalc ? metalc9 F NE2 HIS 91 J HIS 92 1_555 N FE HEM . J HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc10 N FE HEM . J HEM 147 1_555 V O HOH . J HOH 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc11 G NE2 HIS 87 K HIS 87 1_555 O FE HEM . K HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc12 H NE2 HIS 91 L HIS 92 1_555 P FE HEM . L HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2RI4 _atom_sites.fract_transf_matrix[1][1] 0.018978 _atom_sites.fract_transf_matrix[1][2] 0.006513 _atom_sites.fract_transf_matrix[1][3] 0.003391 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015474 _atom_sites.fract_transf_matrix[2][3] 0.006441 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HEM A 1 142 142 HEM HEM . J 3 HEM B 1 147 147 HEM HEM . K 3 HEM C 1 142 142 HEM HEM . L 3 HEM D 1 147 147 HEM HEM . M 3 HEM I 1 142 142 HEM HEM . N 3 HEM J 1 147 147 HEM HEM . O 3 HEM K 1 142 142 HEM HEM . P 3 HEM L 1 147 147 HEM HEM . Q 4 HOH A 1 143 3 HOH HOH . Q 4 HOH A 2 144 13 HOH HOH . Q 4 HOH A 3 145 24 HOH HOH . Q 4 HOH A 4 146 41 HOH HOH . Q 4 HOH A 5 147 49 HOH HOH . R 4 HOH B 1 148 1 HOH HOH . R 4 HOH B 2 149 25 HOH HOH . R 4 HOH B 3 150 28 HOH HOH . R 4 HOH B 4 151 31 HOH HOH . R 4 HOH B 5 152 37 HOH HOH . R 4 HOH B 6 153 50 HOH HOH . S 4 HOH C 1 143 5 HOH HOH . S 4 HOH C 2 144 7 HOH HOH . S 4 HOH C 3 145 9 HOH HOH . S 4 HOH C 4 146 32 HOH HOH . S 4 HOH C 5 147 46 HOH HOH . T 4 HOH D 1 148 8 HOH HOH . T 4 HOH D 2 149 10 HOH HOH . T 4 HOH D 3 150 16 HOH HOH . T 4 HOH D 4 151 35 HOH HOH . T 4 HOH D 5 152 36 HOH HOH . T 4 HOH D 6 153 43 HOH HOH . T 4 HOH D 7 154 47 HOH HOH . T 4 HOH D 8 155 51 HOH HOH . U 4 HOH I 1 143 2 HOH HOH . U 4 HOH I 2 144 6 HOH HOH . U 4 HOH I 3 145 11 HOH HOH . U 4 HOH I 4 146 15 HOH HOH . U 4 HOH I 5 147 18 HOH HOH . U 4 HOH I 6 148 19 HOH HOH . U 4 HOH I 7 149 29 HOH HOH . U 4 HOH I 8 150 34 HOH HOH . U 4 HOH I 9 151 38 HOH HOH . V 4 HOH J 1 148 12 HOH HOH . V 4 HOH J 2 149 17 HOH HOH . V 4 HOH J 3 150 22 HOH HOH . V 4 HOH J 4 151 23 HOH HOH . V 4 HOH J 5 152 26 HOH HOH . V 4 HOH J 6 153 48 HOH HOH . W 4 HOH K 1 143 14 HOH HOH . W 4 HOH K 2 144 27 HOH HOH . W 4 HOH K 3 145 30 HOH HOH . W 4 HOH K 4 146 39 HOH HOH . W 4 HOH K 5 147 40 HOH HOH . W 4 HOH K 6 148 42 HOH HOH . W 4 HOH K 7 149 44 HOH HOH . X 4 HOH L 1 148 4 HOH HOH . X 4 HOH L 2 149 20 HOH HOH . X 4 HOH L 3 150 21 HOH HOH . X 4 HOH L 4 151 33 HOH HOH . X 4 HOH L 5 152 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 3 6.241 -17.546 13.087 1 53.09 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . J 3 3.013 -19.019 9.791 1 52.62 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . J 3 3.111 -14.557 7.895 1 53.08 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . J 3 6.851 -13.355 10.678 1 50.99 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . J 3 5.318 -18.319 12.423 1 53.1 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . J 3 4.878 -19.637 12.849 1 53.14 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . J 3 3.982 -20.042 11.929 1 52.13 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . J 3 3.836 -19.004 10.913 1 53.01 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . J 3 3.216 -21.376 11.907 1 51.34 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . J 3 5.433 -20.348 14.14 1 54.75 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . J 3 4.407 -21.067 15.055 1 56.94 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . J 3 5.021 -21.763 16.274 1 57.42 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . J 3 5.642 -22.86 16.139 1 57.06 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . J 3 4.887 -21.221 17.41 1 57.41 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . J 3 2.795 -17.961 8.916 1 53.72 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . J 3 2.061 -17.951 7.637 1 54.83 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . J 3 2.1 -16.711 7.135 1 54.91 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . J 3 2.853 -15.89 8.055 1 54.22 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . J 3 1.331 -19.118 6.918 1 54.31 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . J 3 1.456 -16.241 5.804 1 55.65 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . J 3 0.461 -15.343 5.768 1 55.87 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . J 3 4.216 -13.914 8.372 1 51.54 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . J 3 4.859 -12.786 7.751 1 50.71 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . J 3 5.898 -12.448 8.524 1 50.95 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . J 3 5.94 -13.358 9.648 1 50.71 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . J 3 4.4 -12.127 6.433 1 48.65 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . J 3 6.906 -11.303 8.276 1 50.67 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . J 3 6.531 -10.121 7.797 1 50.37 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . J 3 7.024 -14.334 11.635 1 51.41 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . J 3 7.943 -14.288 12.746 1 51.7 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . J 3 7.753 -15.598 13.494 1 51.82 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . J 3 6.735 -16.302 12.755 1 52.23 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . J 3 8.925 -13.16 13.113 1 53.51 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . J 3 8.498 -16.068 14.761 1 53.72 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . J 3 9.399 -17.269 14.436 1 54.56 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . J 3 9.308 -18.3 15.538 1 56.01 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . J 3 10.367 -18.55 16.171 1 56.18 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . J 3 8.198 -18.866 15.796 1 56.34 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . J 3 4.68 -17.963 11.256 1 53.08 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . J 3 3.266 -16.673 9.119 1 53.61 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . J 3 4.896 -14.233 9.518 1 51.4 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . J 3 6.338 -15.529 11.68 1 51.73 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . J 3 4.935 -16.032 10.302 1 54.06 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #