data_2RIF # _model_server_result.job_id '_HNSO0t9Rq9WmlevDLsYXQ' _model_server_result.datetime_utc '2024-10-19 14:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":301}' # _entry.id 2RIF # _exptl.entry_id 2RIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RIF _cell.length_a 55.726 _cell.length_b 55.726 _cell.length_c 336.351 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,X,Y 1 1 C,D,O,P,Q,R,S,T,U,V,W,Z,AA 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 M N N ? 3 N N N ? 3 R N N ? 3 S N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 120 1_555 B SG CYS 123 B CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 C SG CYS 123 C CYS 120 1_555 D SG CYS 123 D CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2RIF _atom_sites.fract_transf_matrix[1][1] 0.017945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CS A 1 139 3 CS CS . F 2 CS A 1 140 10 CS CS . G 3 AMP A 1 201 201 AMP AMP . H 3 AMP A 1 301 301 AMP AMP . I 2 CS B 1 139 1 CS CS . J 2 CS B 1 140 5 CS CS . K 2 CS B 1 141 6 CS CS . L 2 CS B 1 142 8 CS CS . M 3 AMP B 1 201 201 AMP AMP . N 3 AMP B 1 301 301 AMP AMP . O 2 CS C 1 139 2 CS CS . P 2 CS C 1 140 4 CS CS . Q 2 CS C 1 141 9 CS CS . R 3 AMP C 1 201 201 AMP AMP . S 3 AMP C 1 301 301 AMP AMP . T 2 CS D 1 139 7 CS CS . U 2 CS D 1 140 11 CS CS . V 3 AMP D 1 201 201 AMP AMP . W 3 AMP D 1 301 301 AMP AMP . X 4 HOH A 1 302 1 HOH HOH . X 4 HOH A 2 303 2 HOH HOH . X 4 HOH A 3 304 3 HOH HOH . X 4 HOH A 4 305 4 HOH HOH . X 4 HOH A 5 306 17 HOH HOH . X 4 HOH A 6 307 24 HOH HOH . X 4 HOH A 7 308 27 HOH HOH . X 4 HOH A 8 309 28 HOH HOH . X 4 HOH A 9 310 29 HOH HOH . X 4 HOH A 10 311 41 HOH HOH . X 4 HOH A 11 312 61 HOH HOH . X 4 HOH A 12 313 79 HOH HOH . X 4 HOH A 13 314 80 HOH HOH . X 4 HOH A 14 315 92 HOH HOH . X 4 HOH A 15 316 94 HOH HOH . Y 4 HOH B 1 302 5 HOH HOH . Y 4 HOH B 2 303 7 HOH HOH . Y 4 HOH B 3 304 22 HOH HOH . Y 4 HOH B 4 305 23 HOH HOH . Y 4 HOH B 5 306 33 HOH HOH . Y 4 HOH B 6 307 40 HOH HOH . Y 4 HOH B 7 308 43 HOH HOH . Y 4 HOH B 8 309 44 HOH HOH . Y 4 HOH B 9 310 46 HOH HOH . Y 4 HOH B 10 311 47 HOH HOH . Y 4 HOH B 11 312 49 HOH HOH . Y 4 HOH B 12 313 70 HOH HOH . Y 4 HOH B 13 314 71 HOH HOH . Y 4 HOH B 14 315 78 HOH HOH . Y 4 HOH B 15 316 87 HOH HOH . Y 4 HOH B 16 317 88 HOH HOH . Y 4 HOH B 17 318 90 HOH HOH . Y 4 HOH B 18 319 96 HOH HOH . Z 4 HOH C 1 302 9 HOH HOH . Z 4 HOH C 2 303 11 HOH HOH . Z 4 HOH C 3 304 13 HOH HOH . Z 4 HOH C 4 305 14 HOH HOH . Z 4 HOH C 5 306 31 HOH HOH . Z 4 HOH C 6 307 36 HOH HOH . Z 4 HOH C 7 308 50 HOH HOH . Z 4 HOH C 8 309 52 HOH HOH . Z 4 HOH C 9 310 55 HOH HOH . Z 4 HOH C 10 311 56 HOH HOH . Z 4 HOH C 11 312 60 HOH HOH . Z 4 HOH C 12 313 67 HOH HOH . Z 4 HOH C 13 314 81 HOH HOH . Z 4 HOH C 14 315 84 HOH HOH . Z 4 HOH C 15 316 85 HOH HOH . Z 4 HOH C 16 317 86 HOH HOH . Z 4 HOH C 17 318 91 HOH HOH . AA 4 HOH D 1 302 12 HOH HOH . AA 4 HOH D 2 303 16 HOH HOH . AA 4 HOH D 3 304 21 HOH HOH . AA 4 HOH D 4 305 37 HOH HOH . AA 4 HOH D 5 306 53 HOH HOH . AA 4 HOH D 6 307 54 HOH HOH . AA 4 HOH D 7 308 58 HOH HOH . AA 4 HOH D 8 309 69 HOH HOH . AA 4 HOH D 9 310 72 HOH HOH . AA 4 HOH D 10 311 73 HOH HOH . AA 4 HOH D 11 312 76 HOH HOH . AA 4 HOH D 12 313 82 HOH HOH . AA 4 HOH D 13 314 83 HOH HOH . AA 4 HOH D 14 315 89 HOH HOH . AA 4 HOH D 15 316 93 HOH HOH . AA 4 HOH D 16 317 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . W 3 -4.071 -8.255 23.776 1 39.98 ? P AMP 301 D 1 HETATM 2 O O1P AMP . . . W 3 -3.611 -7.029 24.524 1 42.97 ? O1P AMP 301 D 1 HETATM 3 O O2P AMP . . . W 3 -3.424 -8.409 22.426 1 39.18 ? O2P AMP 301 D 1 HETATM 4 O O3P AMP . . . W 3 -4.131 -9.518 24.595 1 41.15 ? O3P AMP 301 D 1 HETATM 5 O O5' AMP . . . W 3 -5.638 -7.982 23.514 1 41.63 ? O5' AMP 301 D 1 HETATM 6 C C5' AMP . . . W 3 -6.217 -8.11 22.219 1 40.74 ? C5' AMP 301 D 1 HETATM 7 C C4' AMP . . . W 3 -7.664 -7.618 22.205 1 41.58 ? C4' AMP 301 D 1 HETATM 8 O O4' AMP . . . W 3 -8.055 -7.007 23.447 1 41.02 ? O4' AMP 301 D 1 HETATM 9 C C3' AMP . . . W 3 -7.833 -6.543 21.151 1 40.07 ? C3' AMP 301 D 1 HETATM 10 O O3' AMP . . . W 3 -9.172 -6.571 20.658 1 40.2 ? O3' AMP 301 D 1 HETATM 11 C C2' AMP . . . W 3 -7.535 -5.277 21.926 1 40.44 ? C2' AMP 301 D 1 HETATM 12 O O2' AMP . . . W 3 -8.078 -4.104 21.31 1 42.95 ? O2' AMP 301 D 1 HETATM 13 C C1' AMP . . . W 3 -8.158 -5.586 23.281 1 40.45 ? C1' AMP 301 D 1 HETATM 14 N N9 AMP . . . W 3 -7.479 -4.874 24.386 1 40.71 ? N9 AMP 301 D 1 HETATM 15 C C8 AMP . . . W 3 -6.268 -5.157 24.892 1 40.85 ? C8 AMP 301 D 1 HETATM 16 N N7 AMP . . . W 3 -5.943 -4.311 25.898 1 40.62 ? N7 AMP 301 D 1 HETATM 17 C C5 AMP . . . W 3 -6.97 -3.463 26.046 1 41.88 ? C5 AMP 301 D 1 HETATM 18 C C6 AMP . . . W 3 -7.286 -2.321 26.926 1 41.49 ? C6 AMP 301 D 1 HETATM 19 N N6 AMP . . . W 3 -6.409 -1.915 27.868 1 41.06 ? N6 AMP 301 D 1 HETATM 20 N N1 AMP . . . W 3 -8.478 -1.705 26.751 1 43.83 ? N1 AMP 301 D 1 HETATM 21 C C2 AMP . . . W 3 -9.364 -2.103 25.814 1 41.93 ? C2 AMP 301 D 1 HETATM 22 N N3 AMP . . . W 3 -9.137 -3.134 24.983 1 41.19 ? N3 AMP 301 D 1 HETATM 23 C C4 AMP . . . W 3 -7.983 -3.839 25.049 1 42.35 ? C4 AMP 301 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #