data_2RIX
#
_model_server_result.job_id            2vKtdo0M8H_T-P0ea_fJUg 
_model_server_result.datetime_utc      '2024-11-07 13:15:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rix 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    2RIX 
#
_exptl.entry_id    2RIX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RIX 
_cell.length_a            52.54 
_cell.length_b            149.93 
_cell.length_c            79.28 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RIX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA,PQS dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -39.64 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MN MN . A MN 1 1_555 A OD2 ASP 150 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 152 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc3 B MN MN . A MN 1 1_555 C O2B UDP . A UDP 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc4 B MN MN . A MN 1 1_555 C O1A UDP . A UDP 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2RIX 
_atom_sites.fract_transf_matrix[1][1]    0.019033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00667 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 1 1 MN MN . 
C 3 UDP A 1 356 1 UDP UDP . 
D 4 GOL A 1 2 2 GOL GOL . 
E 5 HOH A 1 357 1 HOH HOH . 
E 5 HOH A 2 358 2 HOH HOH . 
E 5 HOH A 3 359 3 HOH HOH . 
E 5 HOH A 4 360 4 HOH HOH . 
E 5 HOH A 5 361 5 HOH HOH . 
E 5 HOH A 6 362 6 HOH HOH . 
E 5 HOH A 7 363 7 HOH HOH . 
E 5 HOH A 8 364 8 HOH HOH . 
E 5 HOH A 9 365 9 HOH HOH . 
E 5 HOH A 10 366 10 HOH HOH . 
E 5 HOH A 11 367 11 HOH HOH . 
E 5 HOH A 12 368 12 HOH HOH . 
E 5 HOH A 13 369 13 HOH HOH . 
E 5 HOH A 14 370 14 HOH HOH . 
E 5 HOH A 15 371 15 HOH HOH . 
E 5 HOH A 16 372 16 HOH HOH . 
E 5 HOH A 17 373 17 HOH HOH . 
E 5 HOH A 18 374 18 HOH HOH . 
E 5 HOH A 19 375 19 HOH HOH . 
E 5 HOH A 20 376 20 HOH HOH . 
E 5 HOH A 21 377 21 HOH HOH . 
E 5 HOH A 22 378 22 HOH HOH . 
E 5 HOH A 23 379 23 HOH HOH . 
E 5 HOH A 24 380 24 HOH HOH . 
E 5 HOH A 25 381 25 HOH HOH . 
E 5 HOH A 26 382 26 HOH HOH . 
E 5 HOH A 27 383 27 HOH HOH . 
E 5 HOH A 28 384 28 HOH HOH . 
E 5 HOH A 29 385 29 HOH HOH . 
E 5 HOH A 30 386 30 HOH HOH . 
E 5 HOH A 31 387 31 HOH HOH . 
E 5 HOH A 32 388 32 HOH HOH . 
E 5 HOH A 33 389 33 HOH HOH . 
E 5 HOH A 34 390 34 HOH HOH . 
E 5 HOH A 35 391 35 HOH HOH . 
E 5 HOH A 36 392 36 HOH HOH . 
E 5 HOH A 37 393 37 HOH HOH . 
E 5 HOH A 38 394 38 HOH HOH . 
E 5 HOH A 39 395 39 HOH HOH . 
E 5 HOH A 40 396 40 HOH HOH . 
E 5 HOH A 41 397 41 HOH HOH . 
E 5 HOH A 42 398 42 HOH HOH . 
E 5 HOH A 43 399 43 HOH HOH . 
E 5 HOH A 44 400 44 HOH HOH . 
E 5 HOH A 45 401 45 HOH HOH . 
E 5 HOH A 46 402 46 HOH HOH . 
E 5 HOH A 47 403 47 HOH HOH . 
E 5 HOH A 48 404 48 HOH HOH . 
E 5 HOH A 49 405 49 HOH HOH . 
E 5 HOH A 50 406 50 HOH HOH . 
E 5 HOH A 51 407 51 HOH HOH . 
E 5 HOH A 52 408 52 HOH HOH . 
E 5 HOH A 53 409 53 HOH HOH . 
E 5 HOH A 54 410 54 HOH HOH . 
E 5 HOH A 55 411 55 HOH HOH . 
E 5 HOH A 56 412 56 HOH HOH . 
E 5 HOH A 57 413 57 HOH HOH . 
E 5 HOH A 58 414 58 HOH HOH . 
E 5 HOH A 59 415 59 HOH HOH . 
E 5 HOH A 60 416 60 HOH HOH . 
E 5 HOH A 61 417 61 HOH HOH . 
E 5 HOH A 62 418 62 HOH HOH . 
E 5 HOH A 63 419 63 HOH HOH . 
E 5 HOH A 64 420 64 HOH HOH . 
E 5 HOH A 65 421 65 HOH HOH . 
E 5 HOH A 66 422 66 HOH HOH . 
E 5 HOH A 67 423 67 HOH HOH . 
E 5 HOH A 68 424 68 HOH HOH . 
E 5 HOH A 69 425 69 HOH HOH . 
E 5 HOH A 70 426 70 HOH HOH . 
E 5 HOH A 71 427 71 HOH HOH . 
E 5 HOH A 72 428 72 HOH HOH . 
E 5 HOH A 73 429 73 HOH HOH . 
E 5 HOH A 74 430 74 HOH HOH . 
E 5 HOH A 75 431 75 HOH HOH . 
E 5 HOH A 76 432 76 HOH HOH . 
E 5 HOH A 77 433 77 HOH HOH . 
E 5 HOH A 78 434 78 HOH HOH . 
E 5 HOH A 79 435 79 HOH HOH . 
E 5 HOH A 80 436 80 HOH HOH . 
E 5 HOH A 81 437 81 HOH HOH . 
E 5 HOH A 82 438 82 HOH HOH . 
E 5 HOH A 83 439 83 HOH HOH . 
E 5 HOH A 84 440 84 HOH HOH . 
E 5 HOH A 85 441 85 HOH HOH . 
E 5 HOH A 86 442 86 HOH HOH . 
E 5 HOH A 87 443 87 HOH HOH . 
E 5 HOH A 88 444 88 HOH HOH . 
E 5 HOH A 89 445 89 HOH HOH . 
E 5 HOH A 90 446 90 HOH HOH . 
E 5 HOH A 91 447 91 HOH HOH . 
E 5 HOH A 92 448 92 HOH HOH . 
E 5 HOH A 93 449 93 HOH HOH . 
E 5 HOH A 94 450 94 HOH HOH . 
E 5 HOH A 95 451 95 HOH HOH . 
E 5 HOH A 96 452 96 HOH HOH . 
E 5 HOH A 97 453 97 HOH HOH . 
E 5 HOH A 98 454 98 HOH HOH . 
E 5 HOH A 99 455 99 HOH HOH . 
E 5 HOH A 100 456 100 HOH HOH . 
E 5 HOH A 101 457 101 HOH HOH . 
E 5 HOH A 102 458 102 HOH HOH . 
E 5 HOH A 103 459 103 HOH HOH . 
E 5 HOH A 104 460 104 HOH HOH . 
E 5 HOH A 105 461 105 HOH HOH . 
E 5 HOH A 106 462 106 HOH HOH . 
E 5 HOH A 107 463 107 HOH HOH . 
E 5 HOH A 108 464 108 HOH HOH . 
E 5 HOH A 109 465 109 HOH HOH . 
E 5 HOH A 110 466 110 HOH HOH . 
E 5 HOH A 111 467 111 HOH HOH . 
E 5 HOH A 112 468 112 HOH HOH . 
E 5 HOH A 113 469 113 HOH HOH . 
E 5 HOH A 114 470 114 HOH HOH . 
E 5 HOH A 115 471 115 HOH HOH . 
E 5 HOH A 116 472 116 HOH HOH . 
E 5 HOH A 117 473 117 HOH HOH . 
E 5 HOH A 118 474 118 HOH HOH . 
E 5 HOH A 119 475 119 HOH HOH . 
E 5 HOH A 120 476 120 HOH HOH . 
E 5 HOH A 121 477 121 HOH HOH . 
E 5 HOH A 122 478 122 HOH HOH . 
E 5 HOH A 123 479 123 HOH HOH . 
E 5 HOH A 124 480 124 HOH HOH . 
E 5 HOH A 125 481 125 HOH HOH . 
E 5 HOH A 126 482 126 HOH HOH . 
E 5 HOH A 127 483 127 HOH HOH . 
E 5 HOH A 128 484 128 HOH HOH . 
E 5 HOH A 129 485 129 HOH HOH . 
E 5 HOH A 130 486 130 HOH HOH . 
E 5 HOH A 131 487 131 HOH HOH . 
E 5 HOH A 132 488 132 HOH HOH . 
E 5 HOH A 133 489 133 HOH HOH . 
E 5 HOH A 134 490 134 HOH HOH . 
E 5 HOH A 135 491 135 HOH HOH . 
E 5 HOH A 136 492 136 HOH HOH . 
E 5 HOH A 137 493 137 HOH HOH . 
E 5 HOH A 138 494 138 HOH HOH . 
E 5 HOH A 139 495 139 HOH HOH . 
E 5 HOH A 140 496 140 HOH HOH . 
E 5 HOH A 141 497 141 HOH HOH . 
E 5 HOH A 142 498 142 HOH HOH . 
E 5 HOH A 143 499 143 HOH HOH . 
E 5 HOH A 144 500 144 HOH HOH . 
E 5 HOH A 145 501 145 HOH HOH . 
E 5 HOH A 146 502 146 HOH HOH . 
E 5 HOH A 147 503 147 HOH HOH . 
E 5 HOH A 148 504 148 HOH HOH . 
E 5 HOH A 149 505 149 HOH HOH . 
E 5 HOH A 150 506 150 HOH HOH . 
E 5 HOH A 151 507 151 HOH HOH . 
E 5 HOH A 152 508 152 HOH HOH . 
E 5 HOH A 153 509 153 HOH HOH . 
E 5 HOH A 154 510 154 HOH HOH . 
E 5 HOH A 155 511 155 HOH HOH . 
E 5 HOH A 156 512 156 HOH HOH . 
E 5 HOH A 157 513 157 HOH HOH . 
E 5 HOH A 158 514 158 HOH HOH . 
E 5 HOH A 159 515 159 HOH HOH . 
E 5 HOH A 160 516 160 HOH HOH . 
E 5 HOH A 161 517 161 HOH HOH . 
E 5 HOH A 162 518 162 HOH HOH . 
E 5 HOH A 163 519 163 HOH HOH . 
E 5 HOH A 164 520 164 HOH HOH . 
E 5 HOH A 165 521 165 HOH HOH . 
E 5 HOH A 166 522 166 HOH HOH . 
E 5 HOH A 167 523 167 HOH HOH . 
E 5 HOH A 168 524 168 HOH HOH . 
E 5 HOH A 169 525 169 HOH HOH . 
E 5 HOH A 170 526 170 HOH HOH . 
E 5 HOH A 171 527 171 HOH HOH . 
E 5 HOH A 172 528 172 HOH HOH . 
E 5 HOH A 173 529 173 HOH HOH . 
E 5 HOH A 174 530 174 HOH HOH . 
E 5 HOH A 175 531 175 HOH HOH . 
E 5 HOH A 176 532 176 HOH HOH . 
E 5 HOH A 177 533 177 HOH HOH . 
E 5 HOH A 178 534 178 HOH HOH . 
E 5 HOH A 179 535 179 HOH HOH . 
E 5 HOH A 180 536 180 HOH HOH . 
E 5 HOH A 181 537 181 HOH HOH . 
E 5 HOH A 182 538 182 HOH HOH . 
E 5 HOH A 183 539 183 HOH HOH . 
E 5 HOH A 184 540 184 HOH HOH . 
E 5 HOH A 185 541 185 HOH HOH . 
E 5 HOH A 186 542 186 HOH HOH . 
E 5 HOH A 187 543 187 HOH HOH . 
E 5 HOH A 188 544 188 HOH HOH . 
E 5 HOH A 189 545 189 HOH HOH . 
E 5 HOH A 190 546 190 HOH HOH . 
E 5 HOH A 191 547 191 HOH HOH . 
E 5 HOH A 192 548 192 HOH HOH . 
E 5 HOH A 193 549 193 HOH HOH . 
E 5 HOH A 194 550 194 HOH HOH . 
E 5 HOH A 195 551 195 HOH HOH . 
E 5 HOH A 196 552 196 HOH HOH . 
E 5 HOH A 197 553 197 HOH HOH . 
E 5 HOH A 198 554 198 HOH HOH . 
E 5 HOH A 199 555 199 HOH HOH . 
E 5 HOH A 200 556 200 HOH HOH . 
E 5 HOH A 201 557 201 HOH HOH . 
E 5 HOH A 202 558 202 HOH HOH . 
E 5 HOH A 203 559 203 HOH HOH . 
E 5 HOH A 204 560 204 HOH HOH . 
E 5 HOH A 205 561 205 HOH HOH . 
E 5 HOH A 206 562 206 HOH HOH . 
E 5 HOH A 207 563 207 HOH HOH . 
E 5 HOH A 208 564 208 HOH HOH . 
E 5 HOH A 209 565 209 HOH HOH . 
E 5 HOH A 210 566 210 HOH HOH . 
E 5 HOH A 211 567 211 HOH HOH . 
E 5 HOH A 212 568 212 HOH HOH . 
E 5 HOH A 213 569 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -5.022 -12.393 6.368 0.5 15.6 ? C1 GOL 2 A 1 
HETATM 2 O O1 GOL . . . D 4 -4.368 -11.228 6.826 0.5 13.55 ? O1 GOL 2 A 1 
HETATM 3 C C2 GOL . . . D 4 -6.501 -12.39 6.779 0.5 16.77 ? C2 GOL 2 A 1 
HETATM 4 O O2 GOL . . . D 4 -7.202 -11.323 6.178 0.5 16.63 ? O2 GOL 2 A 1 
HETATM 5 C C3 GOL . . . D 4 -7.143 -13.742 6.47 0.5 17.06 ? C3 GOL 2 A 1 
HETATM 6 O O3 GOL . . . D 4 -7.218 -14 5.09 0.5 16.55 ? O3 GOL 2 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           6 
#