data_2RJ1
#
_model_server_result.job_id            0jYlyJvk13PBkSWCJhCFUw 
_model_server_result.datetime_utc      '2024-11-07 12:58:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rj1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":454}' 
#
_entry.id    2RJ1 
#
_exptl.entry_id    2RJ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RJ1 
_cell.length_a            52.45 
_cell.length_b            149.12 
_cell.length_c            79.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RJ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA,PQS dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -39.82 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MN MN . A MN 1 1_555 A OD2 ASP 150 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 152 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 B MN MN . A MN 1 1_555 A OD2 ASP 152 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc4 B MN MN . A MN 1 1_555 D O3B UDP . A UDP 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc5 B MN MN . A MN 1 1_555 D O1A UDP . A UDP 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc6 B MN MN . A MN 1 1_555 F O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 198 n n 
C1 C2 GOL sing 199 n n 
C1 H11 GOL sing 200 n n 
C1 H12 GOL sing 201 n n 
O1 HO1 GOL sing 202 n n 
C2 O2 GOL sing 203 n n 
C2 C3 GOL sing 204 n n 
C2 H2 GOL sing 205 n n 
O2 HO2 GOL sing 206 n n 
C3 O3 GOL sing 207 n n 
C3 H31 GOL sing 208 n n 
C3 H32 GOL sing 209 n n 
O3 HO3 GOL sing 210 n n 
#
_atom_sites.entry_id                     2RJ1 
_atom_sites.fract_transf_matrix[1][1]    0.019066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012557 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 1 1 MN MN . 
C 3 BHE A 1 452 452 BHE BHE . 
D 4 UDP A 1 453 1 UDP UDP . 
E 5 GOL A 1 454 355 GOL GOL . 
F 6 HOH A 1 455 2 HOH HOH . 
F 6 HOH A 2 456 3 HOH HOH . 
F 6 HOH A 3 457 4 HOH HOH . 
F 6 HOH A 4 458 5 HOH HOH . 
F 6 HOH A 5 459 6 HOH HOH . 
F 6 HOH A 6 460 7 HOH HOH . 
F 6 HOH A 7 461 8 HOH HOH . 
F 6 HOH A 8 462 9 HOH HOH . 
F 6 HOH A 9 463 10 HOH HOH . 
F 6 HOH A 10 464 11 HOH HOH . 
F 6 HOH A 11 465 12 HOH HOH . 
F 6 HOH A 12 466 13 HOH HOH . 
F 6 HOH A 13 467 14 HOH HOH . 
F 6 HOH A 14 468 15 HOH HOH . 
F 6 HOH A 15 469 16 HOH HOH . 
F 6 HOH A 16 470 17 HOH HOH . 
F 6 HOH A 17 471 18 HOH HOH . 
F 6 HOH A 18 472 19 HOH HOH . 
F 6 HOH A 19 473 20 HOH HOH . 
F 6 HOH A 20 474 21 HOH HOH . 
F 6 HOH A 21 475 22 HOH HOH . 
F 6 HOH A 22 476 23 HOH HOH . 
F 6 HOH A 23 477 24 HOH HOH . 
F 6 HOH A 24 478 25 HOH HOH . 
F 6 HOH A 25 479 26 HOH HOH . 
F 6 HOH A 26 480 27 HOH HOH . 
F 6 HOH A 27 481 28 HOH HOH . 
F 6 HOH A 28 482 29 HOH HOH . 
F 6 HOH A 29 483 30 HOH HOH . 
F 6 HOH A 30 484 31 HOH HOH . 
F 6 HOH A 31 485 32 HOH HOH . 
F 6 HOH A 32 486 33 HOH HOH . 
F 6 HOH A 33 487 34 HOH HOH . 
F 6 HOH A 34 488 35 HOH HOH . 
F 6 HOH A 35 489 36 HOH HOH . 
F 6 HOH A 36 490 37 HOH HOH . 
F 6 HOH A 37 491 38 HOH HOH . 
F 6 HOH A 38 492 39 HOH HOH . 
F 6 HOH A 39 493 40 HOH HOH . 
F 6 HOH A 40 494 41 HOH HOH . 
F 6 HOH A 41 495 42 HOH HOH . 
F 6 HOH A 42 496 43 HOH HOH . 
F 6 HOH A 43 497 44 HOH HOH . 
F 6 HOH A 44 498 45 HOH HOH . 
F 6 HOH A 45 499 46 HOH HOH . 
F 6 HOH A 46 500 47 HOH HOH . 
F 6 HOH A 47 501 48 HOH HOH . 
F 6 HOH A 48 502 49 HOH HOH . 
F 6 HOH A 49 503 50 HOH HOH . 
F 6 HOH A 50 504 51 HOH HOH . 
F 6 HOH A 51 505 52 HOH HOH . 
F 6 HOH A 52 506 53 HOH HOH . 
F 6 HOH A 53 507 54 HOH HOH . 
F 6 HOH A 54 508 55 HOH HOH . 
F 6 HOH A 55 509 56 HOH HOH . 
F 6 HOH A 56 510 57 HOH HOH . 
F 6 HOH A 57 511 58 HOH HOH . 
F 6 HOH A 58 512 59 HOH HOH . 
F 6 HOH A 59 513 60 HOH HOH . 
F 6 HOH A 60 514 61 HOH HOH . 
F 6 HOH A 61 515 62 HOH HOH . 
F 6 HOH A 62 516 63 HOH HOH . 
F 6 HOH A 63 517 64 HOH HOH . 
F 6 HOH A 64 518 65 HOH HOH . 
F 6 HOH A 65 519 66 HOH HOH . 
F 6 HOH A 66 520 67 HOH HOH . 
F 6 HOH A 67 521 68 HOH HOH . 
F 6 HOH A 68 522 69 HOH HOH . 
F 6 HOH A 69 523 70 HOH HOH . 
F 6 HOH A 70 524 71 HOH HOH . 
F 6 HOH A 71 525 72 HOH HOH . 
F 6 HOH A 72 526 73 HOH HOH . 
F 6 HOH A 73 527 74 HOH HOH . 
F 6 HOH A 74 528 75 HOH HOH . 
F 6 HOH A 75 529 76 HOH HOH . 
F 6 HOH A 76 530 77 HOH HOH . 
F 6 HOH A 77 531 78 HOH HOH . 
F 6 HOH A 78 532 79 HOH HOH . 
F 6 HOH A 79 533 80 HOH HOH . 
F 6 HOH A 80 534 81 HOH HOH . 
F 6 HOH A 81 535 82 HOH HOH . 
F 6 HOH A 82 536 83 HOH HOH . 
F 6 HOH A 83 537 84 HOH HOH . 
F 6 HOH A 84 538 85 HOH HOH . 
F 6 HOH A 85 539 86 HOH HOH . 
F 6 HOH A 86 540 87 HOH HOH . 
F 6 HOH A 87 541 89 HOH HOH . 
F 6 HOH A 88 542 90 HOH HOH . 
F 6 HOH A 89 543 91 HOH HOH . 
F 6 HOH A 90 544 92 HOH HOH . 
F 6 HOH A 91 545 93 HOH HOH . 
F 6 HOH A 92 546 94 HOH HOH . 
F 6 HOH A 93 547 95 HOH HOH . 
F 6 HOH A 94 548 96 HOH HOH . 
F 6 HOH A 95 549 97 HOH HOH . 
F 6 HOH A 96 550 98 HOH HOH . 
F 6 HOH A 97 551 99 HOH HOH . 
F 6 HOH A 98 552 100 HOH HOH . 
F 6 HOH A 99 553 101 HOH HOH . 
F 6 HOH A 100 554 102 HOH HOH . 
F 6 HOH A 101 555 103 HOH HOH . 
F 6 HOH A 102 556 104 HOH HOH . 
F 6 HOH A 103 557 105 HOH HOH . 
F 6 HOH A 104 558 106 HOH HOH . 
F 6 HOH A 105 559 107 HOH HOH . 
F 6 HOH A 106 560 108 HOH HOH . 
F 6 HOH A 107 561 109 HOH HOH . 
F 6 HOH A 108 562 110 HOH HOH . 
F 6 HOH A 109 563 111 HOH HOH . 
F 6 HOH A 110 564 112 HOH HOH . 
F 6 HOH A 111 565 113 HOH HOH . 
F 6 HOH A 112 566 114 HOH HOH . 
F 6 HOH A 113 567 115 HOH HOH . 
F 6 HOH A 114 568 116 HOH HOH . 
F 6 HOH A 115 569 117 HOH HOH . 
F 6 HOH A 116 570 118 HOH HOH . 
F 6 HOH A 117 571 119 HOH HOH . 
F 6 HOH A 118 572 120 HOH HOH . 
F 6 HOH A 119 573 121 HOH HOH . 
F 6 HOH A 120 574 122 HOH HOH . 
F 6 HOH A 121 575 123 HOH HOH . 
F 6 HOH A 122 576 124 HOH HOH . 
F 6 HOH A 123 577 125 HOH HOH . 
F 6 HOH A 124 578 126 HOH HOH . 
F 6 HOH A 125 579 127 HOH HOH . 
F 6 HOH A 126 580 128 HOH HOH . 
F 6 HOH A 127 581 129 HOH HOH . 
F 6 HOH A 128 582 130 HOH HOH . 
F 6 HOH A 129 583 131 HOH HOH . 
F 6 HOH A 130 584 132 HOH HOH . 
F 6 HOH A 131 585 133 HOH HOH . 
F 6 HOH A 132 586 134 HOH HOH . 
F 6 HOH A 133 587 135 HOH HOH . 
F 6 HOH A 134 588 136 HOH HOH . 
F 6 HOH A 135 589 137 HOH HOH . 
F 6 HOH A 136 590 138 HOH HOH . 
F 6 HOH A 137 591 139 HOH HOH . 
F 6 HOH A 138 592 141 HOH HOH . 
F 6 HOH A 139 593 142 HOH HOH . 
F 6 HOH A 140 594 143 HOH HOH . 
F 6 HOH A 141 595 145 HOH HOH . 
F 6 HOH A 142 596 146 HOH HOH . 
F 6 HOH A 143 597 147 HOH HOH . 
F 6 HOH A 144 598 148 HOH HOH . 
F 6 HOH A 145 599 149 HOH HOH . 
F 6 HOH A 146 600 150 HOH HOH . 
F 6 HOH A 147 601 151 HOH HOH . 
F 6 HOH A 148 602 152 HOH HOH . 
F 6 HOH A 149 603 153 HOH HOH . 
F 6 HOH A 150 604 154 HOH HOH . 
F 6 HOH A 151 605 155 HOH HOH . 
F 6 HOH A 152 606 156 HOH HOH . 
F 6 HOH A 153 607 157 HOH HOH . 
F 6 HOH A 154 608 158 HOH HOH . 
F 6 HOH A 155 609 159 HOH HOH . 
F 6 HOH A 156 610 160 HOH HOH . 
F 6 HOH A 157 611 161 HOH HOH . 
F 6 HOH A 158 612 162 HOH HOH . 
F 6 HOH A 159 613 163 HOH HOH . 
F 6 HOH A 160 614 164 HOH HOH . 
F 6 HOH A 161 615 165 HOH HOH . 
F 6 HOH A 162 616 166 HOH HOH . 
F 6 HOH A 163 617 167 HOH HOH . 
F 6 HOH A 164 618 168 HOH HOH . 
F 6 HOH A 165 619 169 HOH HOH . 
F 6 HOH A 166 620 170 HOH HOH . 
F 6 HOH A 167 621 171 HOH HOH . 
F 6 HOH A 168 622 172 HOH HOH . 
F 6 HOH A 169 623 173 HOH HOH . 
F 6 HOH A 170 624 174 HOH HOH . 
F 6 HOH A 171 625 175 HOH HOH . 
F 6 HOH A 172 626 176 HOH HOH . 
F 6 HOH A 173 627 177 HOH HOH . 
F 6 HOH A 174 628 178 HOH HOH . 
F 6 HOH A 175 629 179 HOH HOH . 
F 6 HOH A 176 630 180 HOH HOH . 
F 6 HOH A 177 631 181 HOH HOH . 
F 6 HOH A 178 632 182 HOH HOH . 
F 6 HOH A 179 633 183 HOH HOH . 
F 6 HOH A 180 634 184 HOH HOH . 
F 6 HOH A 181 635 185 HOH HOH . 
F 6 HOH A 182 636 186 HOH HOH . 
F 6 HOH A 183 637 187 HOH HOH . 
F 6 HOH A 184 638 188 HOH HOH . 
F 6 HOH A 185 639 189 HOH HOH . 
F 6 HOH A 186 640 190 HOH HOH . 
F 6 HOH A 187 641 191 HOH HOH . 
F 6 HOH A 188 642 192 HOH HOH . 
F 6 HOH A 189 643 193 HOH HOH . 
F 6 HOH A 190 644 194 HOH HOH . 
F 6 HOH A 191 645 195 HOH HOH . 
F 6 HOH A 192 646 196 HOH HOH . 
F 6 HOH A 193 647 197 HOH HOH . 
F 6 HOH A 194 648 198 HOH HOH . 
F 6 HOH A 195 649 199 HOH HOH . 
F 6 HOH A 196 650 200 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 10.083 18.971 6.599 1 19.07 ? C1 GOL 454 A 1 
HETATM 2 O O1 GOL . . . E 5 10.297 17.971 5.609 1 19.78 ? O1 GOL 454 A 1 
HETATM 3 C C2 GOL . . . E 5 8.585 19.254 6.778 1 20.22 ? C2 GOL 454 A 1 
HETATM 4 O O2 GOL . . . E 5 7.985 19.498 5.517 1 20.12 ? O2 GOL 454 A 1 
HETATM 5 C C3 GOL . . . E 5 7.873 18.059 7.403 1 19.35 ? C3 GOL 454 A 1 
HETATM 6 O O3 GOL . . . E 5 8.298 17.875 8.743 1 19.35 ? O3 GOL 454 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#