data_2RJ5 # _model_server_result.job_id hYkgprSt48Ztdyg16xjHGg _model_server_result.datetime_utc '2024-11-07 13:06:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":356}' # _entry.id 2RJ5 # _exptl.entry_id 2RJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RJ5 _cell.length_a 52.59 _cell.length_b 149.02 _cell.length_c 79.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -39.825 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3B UDP . A UDP 1 1_555 B MN MN . A MN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 C O1A UDP . A UDP 1 1_555 B MN MN . A MN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 B MN MN . A MN 2 1_555 A OD2 ASP 150 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 B MN MN . A MN 2 1_555 A OD1 ASP 152 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc5 B MN MN . A MN 2 1_555 E O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2RJ5 _atom_sites.fract_transf_matrix[1][1] 0.019015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 2 2 MN MN . C 3 UDP A 1 1 1 UDP UDP . D 4 GOL A 1 356 1 GOL GOL . E 5 HOH A 1 357 1 HOH HOH . E 5 HOH A 2 358 2 HOH HOH . E 5 HOH A 3 359 3 HOH HOH . E 5 HOH A 4 360 4 HOH HOH . E 5 HOH A 5 361 5 HOH HOH . E 5 HOH A 6 362 6 HOH HOH . E 5 HOH A 7 363 7 HOH HOH . E 5 HOH A 8 364 8 HOH HOH . E 5 HOH A 9 365 9 HOH HOH . E 5 HOH A 10 366 10 HOH HOH . E 5 HOH A 11 367 11 HOH HOH . E 5 HOH A 12 368 12 HOH HOH . E 5 HOH A 13 369 13 HOH HOH . E 5 HOH A 14 370 14 HOH HOH . E 5 HOH A 15 371 15 HOH HOH . E 5 HOH A 16 372 16 HOH HOH . E 5 HOH A 17 373 17 HOH HOH . E 5 HOH A 18 374 18 HOH HOH . E 5 HOH A 19 375 19 HOH HOH . E 5 HOH A 20 376 20 HOH HOH . E 5 HOH A 21 377 21 HOH HOH . E 5 HOH A 22 378 22 HOH HOH . E 5 HOH A 23 379 23 HOH HOH . E 5 HOH A 24 380 24 HOH HOH . E 5 HOH A 25 381 25 HOH HOH . E 5 HOH A 26 382 26 HOH HOH . E 5 HOH A 27 383 27 HOH HOH . E 5 HOH A 28 384 28 HOH HOH . E 5 HOH A 29 385 29 HOH HOH . E 5 HOH A 30 386 30 HOH HOH . E 5 HOH A 31 387 31 HOH HOH . E 5 HOH A 32 388 32 HOH HOH . E 5 HOH A 33 389 33 HOH HOH . E 5 HOH A 34 390 34 HOH HOH . E 5 HOH A 35 391 35 HOH HOH . E 5 HOH A 36 392 36 HOH HOH . E 5 HOH A 37 393 37 HOH HOH . E 5 HOH A 38 394 38 HOH HOH . E 5 HOH A 39 395 39 HOH HOH . E 5 HOH A 40 396 40 HOH HOH . E 5 HOH A 41 397 41 HOH HOH . E 5 HOH A 42 398 42 HOH HOH . E 5 HOH A 43 399 43 HOH HOH . E 5 HOH A 44 400 44 HOH HOH . E 5 HOH A 45 401 45 HOH HOH . E 5 HOH A 46 402 46 HOH HOH . E 5 HOH A 47 403 47 HOH HOH . E 5 HOH A 48 404 48 HOH HOH . E 5 HOH A 49 405 49 HOH HOH . E 5 HOH A 50 406 50 HOH HOH . E 5 HOH A 51 407 51 HOH HOH . E 5 HOH A 52 408 52 HOH HOH . E 5 HOH A 53 409 53 HOH HOH . E 5 HOH A 54 410 54 HOH HOH . E 5 HOH A 55 411 55 HOH HOH . E 5 HOH A 56 412 56 HOH HOH . E 5 HOH A 57 413 57 HOH HOH . E 5 HOH A 58 414 58 HOH HOH . E 5 HOH A 59 415 59 HOH HOH . E 5 HOH A 60 416 60 HOH HOH . E 5 HOH A 61 417 61 HOH HOH . E 5 HOH A 62 418 62 HOH HOH . E 5 HOH A 63 419 63 HOH HOH . E 5 HOH A 64 420 64 HOH HOH . E 5 HOH A 65 421 65 HOH HOH . E 5 HOH A 66 422 66 HOH HOH . E 5 HOH A 67 423 67 HOH HOH . E 5 HOH A 68 424 68 HOH HOH . E 5 HOH A 69 425 69 HOH HOH . E 5 HOH A 70 426 70 HOH HOH . E 5 HOH A 71 427 71 HOH HOH . E 5 HOH A 72 428 72 HOH HOH . E 5 HOH A 73 429 73 HOH HOH . E 5 HOH A 74 430 74 HOH HOH . E 5 HOH A 75 431 75 HOH HOH . E 5 HOH A 76 432 76 HOH HOH . E 5 HOH A 77 433 77 HOH HOH . E 5 HOH A 78 434 78 HOH HOH . E 5 HOH A 79 435 79 HOH HOH . E 5 HOH A 80 436 80 HOH HOH . E 5 HOH A 81 437 81 HOH HOH . E 5 HOH A 82 438 82 HOH HOH . E 5 HOH A 83 439 83 HOH HOH . E 5 HOH A 84 440 84 HOH HOH . E 5 HOH A 85 441 85 HOH HOH . E 5 HOH A 86 442 86 HOH HOH . E 5 HOH A 87 443 87 HOH HOH . E 5 HOH A 88 444 88 HOH HOH . E 5 HOH A 89 445 89 HOH HOH . E 5 HOH A 90 446 90 HOH HOH . E 5 HOH A 91 447 91 HOH HOH . E 5 HOH A 92 448 92 HOH HOH . E 5 HOH A 93 449 93 HOH HOH . E 5 HOH A 94 450 94 HOH HOH . E 5 HOH A 95 451 95 HOH HOH . E 5 HOH A 96 452 96 HOH HOH . E 5 HOH A 97 453 97 HOH HOH . E 5 HOH A 98 454 98 HOH HOH . E 5 HOH A 99 455 99 HOH HOH . E 5 HOH A 100 456 100 HOH HOH . E 5 HOH A 101 457 101 HOH HOH . E 5 HOH A 102 458 102 HOH HOH . E 5 HOH A 103 459 103 HOH HOH . E 5 HOH A 104 460 104 HOH HOH . E 5 HOH A 105 461 105 HOH HOH . E 5 HOH A 106 462 106 HOH HOH . E 5 HOH A 107 463 107 HOH HOH . E 5 HOH A 108 464 108 HOH HOH . E 5 HOH A 109 465 109 HOH HOH . E 5 HOH A 110 466 110 HOH HOH . E 5 HOH A 111 467 111 HOH HOH . E 5 HOH A 112 468 112 HOH HOH . E 5 HOH A 113 469 113 HOH HOH . E 5 HOH A 114 470 114 HOH HOH . E 5 HOH A 115 471 115 HOH HOH . E 5 HOH A 116 472 116 HOH HOH . E 5 HOH A 117 473 117 HOH HOH . E 5 HOH A 118 474 118 HOH HOH . E 5 HOH A 119 475 119 HOH HOH . E 5 HOH A 120 476 120 HOH HOH . E 5 HOH A 121 477 121 HOH HOH . E 5 HOH A 122 478 122 HOH HOH . E 5 HOH A 123 479 123 HOH HOH . E 5 HOH A 124 480 124 HOH HOH . E 5 HOH A 125 481 125 HOH HOH . E 5 HOH A 126 482 126 HOH HOH . E 5 HOH A 127 483 127 HOH HOH . E 5 HOH A 128 484 128 HOH HOH . E 5 HOH A 129 485 129 HOH HOH . E 5 HOH A 130 486 130 HOH HOH . E 5 HOH A 131 487 131 HOH HOH . E 5 HOH A 132 488 132 HOH HOH . E 5 HOH A 133 489 133 HOH HOH . E 5 HOH A 134 490 134 HOH HOH . E 5 HOH A 135 491 135 HOH HOH . E 5 HOH A 136 492 136 HOH HOH . E 5 HOH A 137 493 137 HOH HOH . E 5 HOH A 138 494 138 HOH HOH . E 5 HOH A 139 495 139 HOH HOH . E 5 HOH A 140 496 140 HOH HOH . E 5 HOH A 141 497 141 HOH HOH . E 5 HOH A 142 498 142 HOH HOH . E 5 HOH A 143 499 143 HOH HOH . E 5 HOH A 144 500 144 HOH HOH . E 5 HOH A 145 501 145 HOH HOH . E 5 HOH A 146 502 146 HOH HOH . E 5 HOH A 147 503 147 HOH HOH . E 5 HOH A 148 504 148 HOH HOH . E 5 HOH A 149 505 149 HOH HOH . E 5 HOH A 150 506 150 HOH HOH . E 5 HOH A 151 507 151 HOH HOH . E 5 HOH A 152 508 152 HOH HOH . E 5 HOH A 153 509 153 HOH HOH . E 5 HOH A 154 510 154 HOH HOH . E 5 HOH A 155 511 155 HOH HOH . E 5 HOH A 156 512 156 HOH HOH . E 5 HOH A 157 513 157 HOH HOH . E 5 HOH A 158 514 158 HOH HOH . E 5 HOH A 159 515 159 HOH HOH . E 5 HOH A 160 516 160 HOH HOH . E 5 HOH A 161 517 161 HOH HOH . E 5 HOH A 162 518 162 HOH HOH . E 5 HOH A 163 519 163 HOH HOH . E 5 HOH A 164 520 164 HOH HOH . E 5 HOH A 165 521 165 HOH HOH . E 5 HOH A 166 522 166 HOH HOH . E 5 HOH A 167 523 167 HOH HOH . E 5 HOH A 168 524 168 HOH HOH . E 5 HOH A 169 525 169 HOH HOH . E 5 HOH A 170 526 170 HOH HOH . E 5 HOH A 171 527 171 HOH HOH . E 5 HOH A 172 528 172 HOH HOH . E 5 HOH A 173 529 173 HOH HOH . E 5 HOH A 174 530 174 HOH HOH . E 5 HOH A 175 531 175 HOH HOH . E 5 HOH A 176 532 176 HOH HOH . E 5 HOH A 177 533 177 HOH HOH . E 5 HOH A 178 534 178 HOH HOH . E 5 HOH A 179 535 179 HOH HOH . E 5 HOH A 180 536 180 HOH HOH . E 5 HOH A 181 537 181 HOH HOH . E 5 HOH A 182 538 182 HOH HOH . E 5 HOH A 183 539 183 HOH HOH . E 5 HOH A 184 540 184 HOH HOH . E 5 HOH A 185 541 185 HOH HOH . E 5 HOH A 186 542 186 HOH HOH . E 5 HOH A 187 543 187 HOH HOH . E 5 HOH A 188 544 188 HOH HOH . E 5 HOH A 189 545 189 HOH HOH . E 5 HOH A 190 546 190 HOH HOH . E 5 HOH A 191 547 191 HOH HOH . E 5 HOH A 192 548 192 HOH HOH . E 5 HOH A 193 549 193 HOH HOH . E 5 HOH A 194 550 194 HOH HOH . E 5 HOH A 195 551 195 HOH HOH . E 5 HOH A 196 552 196 HOH HOH . E 5 HOH A 197 553 197 HOH HOH . E 5 HOH A 198 554 198 HOH HOH . E 5 HOH A 199 555 199 HOH HOH . E 5 HOH A 200 556 200 HOH HOH . E 5 HOH A 201 557 201 HOH HOH . E 5 HOH A 202 558 202 HOH HOH . E 5 HOH A 203 559 203 HOH HOH . E 5 HOH A 204 560 204 HOH HOH . E 5 HOH A 205 561 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -5.374 -12.323 6.173 1 18.88 ? C1 GOL 356 A 1 HETATM 2 O O1 GOL . . . D 4 -4.681 -11.23 6.714 1 19.54 ? O1 GOL 356 A 1 HETATM 3 C C2 GOL . . . D 4 -6.81 -12.324 6.689 1 19.82 ? C2 GOL 356 A 1 HETATM 4 O O2 GOL . . . D 4 -7.542 -11.304 6.043 1 21.46 ? O2 GOL 356 A 1 HETATM 5 C C3 GOL . . . D 4 -7.439 -13.686 6.4 1 19.91 ? C3 GOL 356 A 1 HETATM 6 O O3 GOL . . . D 4 -7.439 -13.937 5.008 1 19.51 ? O3 GOL 356 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #