data_2RJO # _model_server_result.job_id gaPBF-8k5v5vqsN4iM6b1A _model_server_result.datetime_utc '2024-12-26 15:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":368}' # _entry.id 2RJO # _exptl.entry_id 2RJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RJO _cell.length_a 51.197 _cell.length_b 51.504 _cell.length_c 138.757 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 132 A SER 167 1_555 A N MSE 133 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 133 A MSE 168 1_555 A N GLY 134 A GLY 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ILE 186 A ILE 221 1_555 A N MSE 187 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 187 A MSE 222 1_555 A N GLN 188 A GLN 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C TRP 190 A TRP 225 1_555 A N MSE 191 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 191 A MSE 226 1_555 A N THR 192 A THR 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C ASP 207 A ASP 242 1_555 A N MSE 208 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 208 A MSE 243 1_555 A N ALA 209 A ALA 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C GLY 229 A GLY 264 1_555 A N MSE 230 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 230 A MSE 265 1_555 A N ASP 231 A ASP 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C SER 262 A SER 297 1_555 A N MSE 263 A MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 263 A MSE 298 1_555 A N GLY 264 A GLY 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2RJO _atom_sites.fract_transf_matrix[1][1] 0.019532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL A 1 368 368 GAL GAL . C 3 SO4 A 1 369 369 SO4 SO4 . D 3 SO4 A 1 370 370 SO4 SO4 . E 3 SO4 A 1 371 371 SO4 SO4 . F 3 SO4 A 1 372 372 SO4 SO4 . G 4 HOH A 1 373 373 HOH HOH . G 4 HOH A 2 374 374 HOH HOH . G 4 HOH A 3 375 375 HOH HOH . G 4 HOH A 4 376 376 HOH HOH . G 4 HOH A 5 377 377 HOH HOH . G 4 HOH A 6 378 378 HOH HOH . G 4 HOH A 7 379 379 HOH HOH . G 4 HOH A 8 380 380 HOH HOH . G 4 HOH A 9 381 381 HOH HOH . G 4 HOH A 10 382 382 HOH HOH . G 4 HOH A 11 383 383 HOH HOH . G 4 HOH A 12 384 384 HOH HOH . G 4 HOH A 13 385 385 HOH HOH . G 4 HOH A 14 386 386 HOH HOH . G 4 HOH A 15 387 387 HOH HOH . G 4 HOH A 16 388 388 HOH HOH . G 4 HOH A 17 389 389 HOH HOH . G 4 HOH A 18 390 390 HOH HOH . G 4 HOH A 19 391 391 HOH HOH . G 4 HOH A 20 392 392 HOH HOH . G 4 HOH A 21 393 393 HOH HOH . G 4 HOH A 22 394 394 HOH HOH . G 4 HOH A 23 395 395 HOH HOH . G 4 HOH A 24 396 396 HOH HOH . G 4 HOH A 25 397 397 HOH HOH . G 4 HOH A 26 398 398 HOH HOH . G 4 HOH A 27 399 399 HOH HOH . G 4 HOH A 28 400 400 HOH HOH . G 4 HOH A 29 401 401 HOH HOH . G 4 HOH A 30 402 402 HOH HOH . G 4 HOH A 31 403 403 HOH HOH . G 4 HOH A 32 404 404 HOH HOH . G 4 HOH A 33 405 405 HOH HOH . G 4 HOH A 34 406 406 HOH HOH . G 4 HOH A 35 407 407 HOH HOH . G 4 HOH A 36 408 408 HOH HOH . G 4 HOH A 37 409 409 HOH HOH . G 4 HOH A 38 410 410 HOH HOH . G 4 HOH A 39 411 411 HOH HOH . G 4 HOH A 40 412 412 HOH HOH . G 4 HOH A 41 413 413 HOH HOH . G 4 HOH A 42 414 414 HOH HOH . G 4 HOH A 43 415 415 HOH HOH . G 4 HOH A 44 416 416 HOH HOH . G 4 HOH A 45 417 417 HOH HOH . G 4 HOH A 46 418 418 HOH HOH . G 4 HOH A 47 419 419 HOH HOH . G 4 HOH A 48 420 420 HOH HOH . G 4 HOH A 49 421 421 HOH HOH . G 4 HOH A 50 422 422 HOH HOH . G 4 HOH A 51 423 423 HOH HOH . G 4 HOH A 52 424 424 HOH HOH . G 4 HOH A 53 425 425 HOH HOH . G 4 HOH A 54 426 426 HOH HOH . G 4 HOH A 55 427 427 HOH HOH . G 4 HOH A 56 428 428 HOH HOH . G 4 HOH A 57 429 429 HOH HOH . G 4 HOH A 58 430 430 HOH HOH . G 4 HOH A 59 431 431 HOH HOH . G 4 HOH A 60 432 432 HOH HOH . G 4 HOH A 61 433 433 HOH HOH . G 4 HOH A 62 434 434 HOH HOH . G 4 HOH A 63 436 436 HOH HOH . G 4 HOH A 64 437 437 HOH HOH . G 4 HOH A 65 438 438 HOH HOH . G 4 HOH A 66 439 439 HOH HOH . G 4 HOH A 67 440 440 HOH HOH . G 4 HOH A 68 441 441 HOH HOH . G 4 HOH A 69 442 442 HOH HOH . G 4 HOH A 70 443 443 HOH HOH . G 4 HOH A 71 444 444 HOH HOH . G 4 HOH A 72 445 445 HOH HOH . G 4 HOH A 73 446 446 HOH HOH . G 4 HOH A 74 447 447 HOH HOH . G 4 HOH A 75 448 448 HOH HOH . G 4 HOH A 76 449 449 HOH HOH . G 4 HOH A 77 450 450 HOH HOH . G 4 HOH A 78 451 451 HOH HOH . G 4 HOH A 79 452 452 HOH HOH . G 4 HOH A 80 453 453 HOH HOH . G 4 HOH A 81 454 454 HOH HOH . G 4 HOH A 82 455 455 HOH HOH . G 4 HOH A 83 456 456 HOH HOH . G 4 HOH A 84 457 457 HOH HOH . G 4 HOH A 85 458 458 HOH HOH . G 4 HOH A 86 459 459 HOH HOH . G 4 HOH A 87 460 460 HOH HOH . G 4 HOH A 88 461 461 HOH HOH . G 4 HOH A 89 462 462 HOH HOH . G 4 HOH A 90 463 463 HOH HOH . G 4 HOH A 91 464 464 HOH HOH . G 4 HOH A 92 465 465 HOH HOH . G 4 HOH A 93 466 466 HOH HOH . G 4 HOH A 94 467 467 HOH HOH . G 4 HOH A 95 468 468 HOH HOH . G 4 HOH A 96 469 469 HOH HOH . G 4 HOH A 97 470 470 HOH HOH . G 4 HOH A 98 471 471 HOH HOH . G 4 HOH A 99 472 472 HOH HOH . G 4 HOH A 100 473 473 HOH HOH . G 4 HOH A 101 474 474 HOH HOH . G 4 HOH A 102 475 475 HOH HOH . G 4 HOH A 103 476 476 HOH HOH . G 4 HOH A 104 477 477 HOH HOH . G 4 HOH A 105 478 478 HOH HOH . G 4 HOH A 106 479 479 HOH HOH . G 4 HOH A 107 480 480 HOH HOH . G 4 HOH A 108 481 481 HOH HOH . G 4 HOH A 109 482 482 HOH HOH . G 4 HOH A 110 483 483 HOH HOH . G 4 HOH A 111 484 484 HOH HOH . G 4 HOH A 112 485 485 HOH HOH . G 4 HOH A 113 486 486 HOH HOH . G 4 HOH A 114 487 487 HOH HOH . G 4 HOH A 115 488 488 HOH HOH . G 4 HOH A 116 489 489 HOH HOH . G 4 HOH A 117 490 490 HOH HOH . G 4 HOH A 118 491 491 HOH HOH . G 4 HOH A 119 492 492 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . B 2 17.95 5.689 18.812 1 19.2 ? C1 GAL 368 A 1 HETATM 2 C C2 GAL . . . B 2 19.245 6.529 18.72 1 17.63 ? C2 GAL 368 A 1 HETATM 3 C C3 GAL . . . B 2 19.923 6.245 17.361 1 19.02 ? C3 GAL 368 A 1 HETATM 4 C C4 GAL . . . B 2 20.241 4.742 17.274 1 18.98 ? C4 GAL 368 A 1 HETATM 5 C C5 GAL . . . B 2 18.89 3.985 17.41 1 20.12 ? C5 GAL 368 A 1 HETATM 6 C C6 GAL . . . B 2 19.163 2.497 17.337 1 18.74 ? C6 GAL 368 A 1 HETATM 7 O O1 GAL . . . B 2 17.323 5.936 20.084 1 17.94 ? O1 GAL 368 A 1 HETATM 8 O O2 GAL . . . B 2 18.923 7.916 18.805 1 18.75 ? O2 GAL 368 A 1 HETATM 9 O O3 GAL . . . B 2 21.138 6.984 17.255 1 16.35 ? O3 GAL 368 A 1 HETATM 10 O O4 GAL . . . B 2 21.098 4.388 18.359 1 18.39 ? O4 GAL 368 A 1 HETATM 11 O O5 GAL . . . B 2 18.264 4.272 18.704 1 19.35 ? O5 GAL 368 A 1 HETATM 12 O O6 GAL . . . B 2 17.923 1.826 17.455 1 16.32 ? O6 GAL 368 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #