data_2RJQ # _model_server_result.job_id mLVYfVAKIBTphcS98kD87g _model_server_result.datetime_utc '2024-12-26 19:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 2RJQ # _exptl.entry_id 2RJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RJQ _cell.length_a 95.471 _cell.length_b 95.471 _cell.length_c 93.487 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 498 NAG 2 n B NAG 2 B 2 NAG C 499 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 342 1_555 A SG CYS 133 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 110 A CYS 371 1_555 A SG CYS 115 A CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 127 A CYS 388 1_555 A SG CYS 210 A CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 165 A CYS 426 1_555 A SG CYS 194 A CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 236 A CYS 497 1_555 A SG CYS 258 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 247 A CYS 508 1_555 A SG CYS 268 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 A SG CYS 253 A CYS 514 1_555 A SG CYS 287 A CYS 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 A SG CYS 281 A CYS 542 1_555 A SG CYS 292 A CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 237 A ASN 498 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A NE2 HIS 149 A HIS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A NE2 HIS 153 A HIS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A NE2 HIS 159 A HIS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 I O1 BAT . A BAT 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 C ZN ZN . A ZN 1 1_555 I O2 BAT . A BAT 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 D ZN ZN . A ZN 2 1_555 A ND1 HIS 113 A HIS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc7 G CA CA . A CA 5 1_555 A OE2 GLU 9 A GLU 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 G CA CA . A CA 5 1_555 A OD1 ASP 99 A ASP 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 G CA CA . A CA 5 1_555 A O CYS 210 A CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 G CA CA . A CA 5 1_555 A OD1 ASP 213 A ASP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc11 G CA CA . A CA 5 1_555 J O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 H CA CA . A CA 6 1_555 A OD1 ASP 108 A ASP 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc13 H CA CA . A CA 6 1_555 A O LEU 109 A LEU 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc14 H CA CA . A CA 6 1_555 A O CYS 115 A CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc15 H CA CA . A CA 6 1_555 A O THR 117 A THR 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc16 H CA CA . A CA 6 1_555 A OE1 GLU 137 A GLU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2RJQ _atom_sites.fract_transf_matrix[1][1] 0.010474 _atom_sites.fract_transf_matrix[1][2] 0.006047 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 3 ZN A 1 2 2 ZN ZN . E 4 CL A 1 3 3 CL CL . F 4 CL A 1 4 4 CL CL . G 5 CA A 1 5 5 CA CA . H 5 CA A 1 6 6 CA CA . I 6 BAT A 1 559 1 BAT BAT . J 7 HOH A 1 560 1 HOH HOH . J 7 HOH A 2 561 3 HOH HOH . J 7 HOH A 3 562 4 HOH HOH . J 7 HOH A 4 563 5 HOH HOH . J 7 HOH A 5 564 6 HOH HOH . J 7 HOH A 6 565 7 HOH HOH . J 7 HOH A 7 566 8 HOH HOH . J 7 HOH A 8 567 9 HOH HOH . J 7 HOH A 9 568 10 HOH HOH . J 7 HOH A 10 569 11 HOH HOH . J 7 HOH A 11 570 12 HOH HOH . J 7 HOH A 12 571 13 HOH HOH . J 7 HOH A 13 572 14 HOH HOH . J 7 HOH A 14 573 15 HOH HOH . J 7 HOH A 15 574 16 HOH HOH . J 7 HOH A 16 575 17 HOH HOH . J 7 HOH A 17 576 18 HOH HOH . J 7 HOH A 18 577 19 HOH HOH . J 7 HOH A 19 578 20 HOH HOH . J 7 HOH A 20 579 21 HOH HOH . J 7 HOH A 21 580 22 HOH HOH . J 7 HOH A 22 581 23 HOH HOH . J 7 HOH A 23 582 24 HOH HOH . J 7 HOH A 24 583 25 HOH HOH . J 7 HOH A 25 584 26 HOH HOH . J 7 HOH A 26 585 27 HOH HOH . J 7 HOH A 27 586 28 HOH HOH . J 7 HOH A 28 587 29 HOH HOH . J 7 HOH A 29 588 30 HOH HOH . J 7 HOH A 30 589 31 HOH HOH . J 7 HOH A 31 590 32 HOH HOH . J 7 HOH A 32 591 33 HOH HOH . J 7 HOH A 33 592 34 HOH HOH . J 7 HOH A 34 593 35 HOH HOH . J 7 HOH A 35 594 36 HOH HOH . J 7 HOH A 36 595 37 HOH HOH . J 7 HOH A 37 596 38 HOH HOH . J 7 HOH A 38 597 39 HOH HOH . J 7 HOH A 39 598 40 HOH HOH . J 7 HOH A 40 599 41 HOH HOH . J 7 HOH A 41 600 42 HOH HOH . J 7 HOH A 42 601 43 HOH HOH . J 7 HOH A 43 602 46 HOH HOH . J 7 HOH A 44 603 47 HOH HOH . J 7 HOH A 45 604 50 HOH HOH . J 7 HOH A 46 605 51 HOH HOH . J 7 HOH A 47 606 53 HOH HOH . J 7 HOH A 48 607 54 HOH HOH . J 7 HOH A 49 608 55 HOH HOH . J 7 HOH A 50 609 57 HOH HOH . J 7 HOH A 51 610 59 HOH HOH . J 7 HOH A 52 611 60 HOH HOH . J 7 HOH A 53 612 61 HOH HOH . J 7 HOH A 54 613 62 HOH HOH . J 7 HOH A 55 614 63 HOH HOH . J 7 HOH A 56 615 65 HOH HOH . J 7 HOH A 57 616 66 HOH HOH . J 7 HOH A 58 617 68 HOH HOH . J 7 HOH A 59 618 69 HOH HOH . J 7 HOH A 60 619 70 HOH HOH . J 7 HOH A 61 620 71 HOH HOH . J 7 HOH A 62 621 72 HOH HOH . J 7 HOH A 63 622 74 HOH HOH . J 7 HOH A 64 623 75 HOH HOH . J 7 HOH A 65 624 76 HOH HOH . J 7 HOH A 66 625 77 HOH HOH . J 7 HOH A 67 626 78 HOH HOH . J 7 HOH A 68 627 79 HOH HOH . J 7 HOH A 69 628 80 HOH HOH . J 7 HOH A 70 629 81 HOH HOH . J 7 HOH A 71 630 82 HOH HOH . J 7 HOH A 72 631 83 HOH HOH . J 7 HOH A 73 632 84 HOH HOH . J 7 HOH A 74 633 85 HOH HOH . J 7 HOH A 75 634 86 HOH HOH . J 7 HOH A 76 635 87 HOH HOH . J 7 HOH A 77 636 88 HOH HOH . J 7 HOH A 78 637 89 HOH HOH . J 7 HOH A 79 638 92 HOH HOH . J 7 HOH A 80 639 93 HOH HOH . J 7 HOH A 81 640 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -44.577 _atom_site.Cartn_y -30.621 _atom_site.Cartn_z 2.452 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #