data_2RK2 # _model_server_result.job_id GIVSlwwMW8YB-dXXnZUN6g _model_server_result.datetime_utc '2024-11-05 01:56:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 2RK2 # _exptl.entry_id 2RK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RK2 _cell.length_a 67.52 _cell.length_b 67.52 _cell.length_c 52.07 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 237 n n C1 H1C1 MRD sing 238 n n C1 H1C2 MRD sing 239 n n C1 H1C3 MRD sing 240 n n C2 O2 MRD sing 241 n n C2 CM MRD sing 242 n n C2 C3 MRD sing 243 n n O2 H2 MRD sing 244 n n CM HMC1 MRD sing 245 n n CM HMC2 MRD sing 246 n n CM HMC3 MRD sing 247 n n C3 C4 MRD sing 248 n n C3 H3C1 MRD sing 249 n n C3 H3C2 MRD sing 250 n n C4 O4 MRD sing 251 n n C4 C5 MRD sing 252 n n C4 H4 MRD sing 253 n n O4 HA MRD sing 254 n n C5 H5C1 MRD sing 255 n n C5 H5C2 MRD sing 256 n n C5 H5C3 MRD sing 257 n n # _atom_sites.entry_id 2RK2 _atom_sites.fract_transf_matrix[1][1] 0.01481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 1 1 NAP NAP . C 3 MRD A 1 500 500 MRD MRD . D 3 MRD A 1 501 501 MRD MRD . E 3 MRD A 1 502 502 MRD MRD . F 4 HOH A 1 503 503 HOH HOH . F 4 HOH A 2 504 504 HOH HOH . F 4 HOH A 3 505 505 HOH HOH . F 4 HOH A 4 506 506 HOH HOH . F 4 HOH A 5 507 507 HOH HOH . F 4 HOH A 6 508 508 HOH HOH . F 4 HOH A 7 509 509 HOH HOH . F 4 HOH A 8 510 510 HOH HOH . F 4 HOH A 9 511 511 HOH HOH . F 4 HOH A 10 512 512 HOH HOH . F 4 HOH A 11 513 513 HOH HOH . F 4 HOH A 12 514 514 HOH HOH . F 4 HOH A 13 515 515 HOH HOH . F 4 HOH A 14 516 516 HOH HOH . F 4 HOH A 15 517 517 HOH HOH . F 4 HOH A 16 518 518 HOH HOH . F 4 HOH A 17 519 519 HOH HOH . F 4 HOH A 18 520 520 HOH HOH . F 4 HOH A 19 521 521 HOH HOH . F 4 HOH A 20 522 522 HOH HOH . F 4 HOH A 21 523 523 HOH HOH . F 4 HOH A 22 524 524 HOH HOH . F 4 HOH A 23 525 525 HOH HOH . F 4 HOH A 24 526 526 HOH HOH . F 4 HOH A 25 527 527 HOH HOH . F 4 HOH A 26 528 528 HOH HOH . F 4 HOH A 27 529 529 HOH HOH . F 4 HOH A 28 530 530 HOH HOH . F 4 HOH A 29 531 531 HOH HOH . F 4 HOH A 30 532 532 HOH HOH . F 4 HOH A 31 533 533 HOH HOH . F 4 HOH A 32 534 534 HOH HOH . F 4 HOH A 33 535 535 HOH HOH . F 4 HOH A 34 536 536 HOH HOH . F 4 HOH A 35 537 537 HOH HOH . F 4 HOH A 36 538 538 HOH HOH . F 4 HOH A 37 539 539 HOH HOH . F 4 HOH A 38 540 540 HOH HOH . F 4 HOH A 39 541 541 HOH HOH . F 4 HOH A 40 542 542 HOH HOH . F 4 HOH A 41 543 543 HOH HOH . F 4 HOH A 42 544 544 HOH HOH . F 4 HOH A 43 545 545 HOH HOH . F 4 HOH A 44 546 546 HOH HOH . F 4 HOH A 45 547 547 HOH HOH . F 4 HOH A 46 548 548 HOH HOH . F 4 HOH A 47 549 549 HOH HOH . F 4 HOH A 48 550 550 HOH HOH . F 4 HOH A 49 551 551 HOH HOH . F 4 HOH A 50 552 552 HOH HOH . F 4 HOH A 51 553 553 HOH HOH . F 4 HOH A 52 554 554 HOH HOH . F 4 HOH A 53 555 555 HOH HOH . F 4 HOH A 54 556 556 HOH HOH . F 4 HOH A 55 557 557 HOH HOH . F 4 HOH A 56 558 558 HOH HOH . F 4 HOH A 57 559 559 HOH HOH . F 4 HOH A 58 560 560 HOH HOH . F 4 HOH A 59 561 561 HOH HOH . F 4 HOH A 60 562 562 HOH HOH . F 4 HOH A 61 563 563 HOH HOH . F 4 HOH A 62 564 564 HOH HOH . F 4 HOH A 63 565 565 HOH HOH . F 4 HOH A 64 566 566 HOH HOH . F 4 HOH A 65 567 567 HOH HOH . F 4 HOH A 66 568 568 HOH HOH . F 4 HOH A 67 569 569 HOH HOH . F 4 HOH A 68 570 570 HOH HOH . F 4 HOH A 69 571 571 HOH HOH . F 4 HOH A 70 572 572 HOH HOH . F 4 HOH A 71 573 573 HOH HOH . F 4 HOH A 72 574 574 HOH HOH . F 4 HOH A 73 575 575 HOH HOH . F 4 HOH A 74 576 576 HOH HOH . F 4 HOH A 75 577 577 HOH HOH . F 4 HOH A 76 578 578 HOH HOH . F 4 HOH A 77 579 579 HOH HOH . F 4 HOH A 78 580 580 HOH HOH . F 4 HOH A 79 581 581 HOH HOH . F 4 HOH A 80 582 582 HOH HOH . F 4 HOH A 81 583 583 HOH HOH . F 4 HOH A 82 584 584 HOH HOH . F 4 HOH A 83 585 585 HOH HOH . F 4 HOH A 84 586 586 HOH HOH . F 4 HOH A 85 587 587 HOH HOH . F 4 HOH A 86 588 588 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . E 3 4.402 1.622 20.566 1 61.79 ? C1 MRD 502 A 1 HETATM 2 C C2 MRD . . . E 3 5.34 0.53 20.054 1 61.69 ? C2 MRD 502 A 1 HETATM 3 O O2 MRD . . . E 3 6.633 0.58 20.69 1 63.71 ? O2 MRD 502 A 1 HETATM 4 C CM MRD . . . E 3 5.528 0.758 18.549 1 58.53 ? CM MRD 502 A 1 HETATM 5 C C3 MRD . . . E 3 4.766 -0.827 20.468 1 61.39 ? C3 MRD 502 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #