data_2RKC
#
_model_server_result.job_id            6rqqTfx2eEJWCHsA5md6-w 
_model_server_result.datetime_utc      '2025-04-14 01:47:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":618}' 
#
_entry.id    2RKC 
#
_exptl.entry_id    2RKC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RKC 
_cell.length_a            134.197 
_cell.length_b            134.197 
_cell.length_c            100.647 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 132 A CYS 287 1_555 A SG CYS 145 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 226 A CYS 381 1_555 A SG CYS 339 A CYS 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 231 A CYS 386 1_555 A SG CYS 239 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 415 A CYS 570 1_555 A SG CYS 424 A CYS 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 45 A ASN 200 1_555 B C1 NAG . A NAG 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 60 A ASN 215 1_555 C C1 NAG . A NAG 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2RKC 
_atom_sites.fract_transf_matrix[1][1]    0.007452 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007452 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 618 200 NAG NAG . 
C 2 NAG A 1 619 215 NAG NAG . 
D 3 HOH A 1 1 1 HOH WAT . 
D 3 HOH A 2 2 2 HOH WAT . 
D 3 HOH A 3 3 3 HOH WAT . 
D 3 HOH A 4 4 4 HOH WAT . 
D 3 HOH A 5 5 5 HOH WAT . 
D 3 HOH A 6 6 6 HOH WAT . 
D 3 HOH A 7 7 7 HOH WAT . 
D 3 HOH A 8 9 9 HOH WAT . 
D 3 HOH A 9 10 10 HOH WAT . 
D 3 HOH A 10 11 11 HOH WAT . 
D 3 HOH A 11 12 12 HOH WAT . 
D 3 HOH A 12 13 13 HOH WAT . 
D 3 HOH A 13 14 14 HOH WAT . 
D 3 HOH A 14 15 15 HOH WAT . 
D 3 HOH A 15 16 16 HOH WAT . 
D 3 HOH A 16 17 17 HOH WAT . 
D 3 HOH A 17 18 18 HOH WAT . 
D 3 HOH A 18 19 19 HOH WAT . 
D 3 HOH A 19 20 20 HOH WAT . 
D 3 HOH A 20 21 21 HOH WAT . 
D 3 HOH A 21 22 22 HOH WAT . 
D 3 HOH A 22 23 23 HOH WAT . 
D 3 HOH A 23 24 24 HOH WAT . 
D 3 HOH A 24 25 25 HOH WAT . 
D 3 HOH A 25 26 26 HOH WAT . 
D 3 HOH A 26 27 27 HOH WAT . 
D 3 HOH A 27 30 30 HOH WAT . 
D 3 HOH A 28 31 31 HOH WAT . 
D 3 HOH A 29 32 32 HOH WAT . 
D 3 HOH A 30 33 33 HOH WAT . 
D 3 HOH A 31 34 34 HOH WAT . 
D 3 HOH A 32 35 35 HOH WAT . 
D 3 HOH A 33 37 37 HOH WAT . 
D 3 HOH A 34 38 38 HOH WAT . 
D 3 HOH A 35 39 39 HOH WAT . 
D 3 HOH A 36 40 40 HOH WAT . 
D 3 HOH A 37 41 41 HOH WAT . 
D 3 HOH A 38 42 42 HOH WAT . 
D 3 HOH A 39 44 44 HOH WAT . 
D 3 HOH A 40 45 45 HOH WAT . 
D 3 HOH A 41 46 46 HOH WAT . 
D 3 HOH A 42 48 48 HOH WAT . 
D 3 HOH A 43 49 49 HOH WAT . 
D 3 HOH A 44 50 50 HOH WAT . 
D 3 HOH A 45 52 52 HOH WAT . 
D 3 HOH A 46 53 53 HOH WAT . 
D 3 HOH A 47 54 54 HOH WAT . 
D 3 HOH A 48 55 55 HOH WAT . 
D 3 HOH A 49 56 56 HOH WAT . 
D 3 HOH A 50 57 57 HOH WAT . 
D 3 HOH A 51 58 58 HOH WAT . 
D 3 HOH A 52 59 59 HOH WAT . 
D 3 HOH A 53 60 60 HOH WAT . 
D 3 HOH A 54 61 61 HOH WAT . 
D 3 HOH A 55 62 62 HOH WAT . 
D 3 HOH A 56 64 64 HOH WAT . 
D 3 HOH A 57 65 65 HOH WAT . 
D 3 HOH A 58 66 66 HOH WAT . 
D 3 HOH A 59 67 67 HOH WAT . 
D 3 HOH A 60 68 68 HOH WAT . 
D 3 HOH A 61 69 69 HOH WAT . 
D 3 HOH A 62 70 70 HOH WAT . 
D 3 HOH A 63 71 71 HOH WAT . 
D 3 HOH A 64 72 72 HOH WAT . 
D 3 HOH A 65 73 73 HOH WAT . 
D 3 HOH A 66 74 74 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 17.8 10.831 51.361 1 73.33 ? C1 NAG 618 A 1 
HETATM 2 C C2 NAG . . . B 2 16.851 10.556 50.182 1 76.56 ? C2 NAG 618 A 1 
HETATM 3 C C3 NAG . . . B 2 15.643 9.716 50.621 1 78.09 ? C3 NAG 618 A 1 
HETATM 4 C C4 NAG . . . B 2 16.103 8.472 51.391 1 78.74 ? C4 NAG 618 A 1 
HETATM 5 C C5 NAG . . . B 2 17.034 8.886 52.536 1 78.64 ? C5 NAG 618 A 1 
HETATM 6 C C6 NAG . . . B 2 17.57 7.704 53.332 1 80.05 ? C6 NAG 618 A 1 
HETATM 7 C C7 NAG . . . B 2 16.596 12.09 48.34 1 81.12 ? C7 NAG 618 A 1 
HETATM 8 C C8 NAG . . . B 2 15.469 11.755 47.366 1 80.33 ? C8 NAG 618 A 1 
HETATM 9 N N2 NAG . . . B 2 16.389 11.814 49.625 1 78.92 ? N2 NAG 618 A 1 
HETATM 10 O O3 NAG . . . B 2 14.894 9.318 49.478 1 77.14 ? O3 NAG 618 A 1 
HETATM 11 O O4 NAG . . . B 2 14.974 7.786 51.916 1 80.89 ? O4 NAG 618 A 1 
HETATM 12 O O5 NAG . . . B 2 18.173 9.603 52.007 1 75.79 ? O5 NAG 618 A 1 
HETATM 13 O O6 NAG . . . B 2 17.463 6.487 52.601 1 81.33 ? O6 NAG 618 A 1 
HETATM 14 O O7 NAG . . . B 2 17.645 12.595 47.923 1 80.44 ? O7 NAG 618 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#