data_2RKF
#
_model_server_result.job_id            6DZqN7tNYRh3iLN8PzPhbw 
_model_server_result.datetime_utc      '2024-11-28 07:28:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rkf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1002}' 
#
_entry.id    2RKF 
#
_exptl.entry_id    2RKF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2RKF 
_cell.length_a            61.961 
_cell.length_b            61.961 
_cell.length_c            84.106 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RKF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 226 n n 
C1 C2 GOL sing 227 n n 
C1 H11 GOL sing 228 n n 
C1 H12 GOL sing 229 n n 
O1 HO1 GOL sing 230 n n 
C2 O2 GOL sing 231 n n 
C2 C3 GOL sing 232 n n 
C2 H2 GOL sing 233 n n 
O2 HO2 GOL sing 234 n n 
C3 O3 GOL sing 235 n n 
C3 H31 GOL sing 236 n n 
C3 H32 GOL sing 237 n n 
O3 HO3 GOL sing 238 n n 
#
_atom_sites.entry_id                     2RKF 
_atom_sites.fract_transf_matrix[1][1]    0.016139 
_atom_sites.fract_transf_matrix[1][2]    0.009318 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01189 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 2001 2001 SO4 SO4 . 
D 3 AB1 A 1 501 501 AB1 AB1 . 
E 4 GOL A 1 1001 1001 GOL GOL . 
F 2 SO4 B 1 2002 2002 SO4 SO4 . 
G 4 GOL B 1 1002 1002 GOL GOL . 
H 5 HOH A 1 2002 1 HOH HOH . 
H 5 HOH A 2 2003 2 HOH HOH . 
H 5 HOH A 3 2004 3 HOH HOH . 
H 5 HOH A 4 2005 4 HOH HOH . 
H 5 HOH A 5 2006 5 HOH HOH . 
H 5 HOH A 6 2007 7 HOH HOH . 
H 5 HOH A 7 2008 9 HOH HOH . 
H 5 HOH A 8 2009 13 HOH HOH . 
H 5 HOH A 9 2010 14 HOH HOH . 
H 5 HOH A 10 2011 15 HOH HOH . 
H 5 HOH A 11 2012 16 HOH HOH . 
H 5 HOH A 12 2013 19 HOH HOH . 
H 5 HOH A 13 2014 20 HOH HOH . 
H 5 HOH A 14 2015 26 HOH HOH . 
H 5 HOH A 15 2016 28 HOH HOH . 
H 5 HOH A 16 2017 31 HOH HOH . 
H 5 HOH A 17 2018 32 HOH HOH . 
H 5 HOH A 18 2019 33 HOH HOH . 
H 5 HOH A 19 2020 34 HOH HOH . 
H 5 HOH A 20 2021 36 HOH HOH . 
H 5 HOH A 21 2022 37 HOH HOH . 
H 5 HOH A 22 2023 38 HOH HOH . 
H 5 HOH A 23 2024 39 HOH HOH . 
H 5 HOH A 24 2025 42 HOH HOH . 
H 5 HOH A 25 2026 44 HOH HOH . 
H 5 HOH A 26 2027 45 HOH HOH . 
H 5 HOH A 27 2028 46 HOH HOH . 
H 5 HOH A 28 2029 47 HOH HOH . 
H 5 HOH A 29 2030 48 HOH HOH . 
H 5 HOH A 30 2031 51 HOH HOH . 
H 5 HOH A 31 2032 52 HOH HOH . 
H 5 HOH A 32 2033 55 HOH HOH . 
H 5 HOH A 33 2034 56 HOH HOH . 
H 5 HOH A 34 2035 58 HOH HOH . 
H 5 HOH A 35 2036 59 HOH HOH . 
H 5 HOH A 36 2037 64 HOH HOH . 
H 5 HOH A 37 2038 68 HOH HOH . 
H 5 HOH A 38 2039 69 HOH HOH . 
H 5 HOH A 39 2040 71 HOH HOH . 
H 5 HOH A 40 2041 72 HOH HOH . 
H 5 HOH A 41 2042 74 HOH HOH . 
H 5 HOH A 42 2043 75 HOH HOH . 
H 5 HOH A 43 2044 76 HOH HOH . 
H 5 HOH A 44 2045 79 HOH HOH . 
H 5 HOH A 45 2046 80 HOH HOH . 
H 5 HOH A 46 2047 82 HOH HOH . 
H 5 HOH A 47 2048 83 HOH HOH . 
H 5 HOH A 48 2049 85 HOH HOH . 
H 5 HOH A 49 2050 89 HOH HOH . 
H 5 HOH A 50 2051 91 HOH HOH . 
H 5 HOH A 51 2052 93 HOH HOH . 
H 5 HOH A 52 2053 95 HOH HOH . 
H 5 HOH A 53 2054 97 HOH HOH . 
H 5 HOH A 54 2055 98 HOH HOH . 
H 5 HOH A 55 2056 103 HOH HOH . 
H 5 HOH A 56 2057 104 HOH HOH . 
H 5 HOH A 57 2058 105 HOH HOH . 
H 5 HOH A 58 2059 107 HOH HOH . 
H 5 HOH A 59 2060 109 HOH HOH . 
H 5 HOH A 60 2061 110 HOH HOH . 
H 5 HOH A 61 2062 111 HOH HOH . 
H 5 HOH A 62 2063 114 HOH HOH . 
H 5 HOH A 63 2064 115 HOH HOH . 
H 5 HOH A 64 2065 119 HOH HOH . 
H 5 HOH A 65 2066 120 HOH HOH . 
H 5 HOH A 66 2067 121 HOH HOH . 
H 5 HOH A 67 2068 122 HOH HOH . 
H 5 HOH A 68 2069 124 HOH HOH . 
H 5 HOH A 69 2070 125 HOH HOH . 
H 5 HOH A 70 2071 127 HOH HOH . 
H 5 HOH A 71 2072 123 HOH HOH . 
H 5 HOH A 72 2073 128 HOH HOH . 
I 5 HOH B 1 2003 70 HOH HOH . 
I 5 HOH B 2 2004 106 HOH HOH . 
I 5 HOH B 3 2005 6 HOH HOH . 
I 5 HOH B 4 2006 8 HOH HOH . 
I 5 HOH B 5 2007 10 HOH HOH . 
I 5 HOH B 6 2008 11 HOH HOH . 
I 5 HOH B 7 2009 12 HOH HOH . 
I 5 HOH B 8 2010 17 HOH HOH . 
I 5 HOH B 9 2011 18 HOH HOH . 
I 5 HOH B 10 2012 21 HOH HOH . 
I 5 HOH B 11 2013 22 HOH HOH . 
I 5 HOH B 12 2014 23 HOH HOH . 
I 5 HOH B 13 2015 24 HOH HOH . 
I 5 HOH B 14 2016 25 HOH HOH . 
I 5 HOH B 15 2017 27 HOH HOH . 
I 5 HOH B 16 2018 29 HOH HOH . 
I 5 HOH B 17 2019 30 HOH HOH . 
I 5 HOH B 18 2020 35 HOH HOH . 
I 5 HOH B 19 2021 40 HOH HOH . 
I 5 HOH B 20 2022 41 HOH HOH . 
I 5 HOH B 21 2023 43 HOH HOH . 
I 5 HOH B 22 2024 49 HOH HOH . 
I 5 HOH B 23 2025 50 HOH HOH . 
I 5 HOH B 24 2026 53 HOH HOH . 
I 5 HOH B 25 2027 54 HOH HOH . 
I 5 HOH B 26 2028 57 HOH HOH . 
I 5 HOH B 27 2029 60 HOH HOH . 
I 5 HOH B 28 2030 61 HOH HOH . 
I 5 HOH B 29 2031 62 HOH HOH . 
I 5 HOH B 30 2032 63 HOH HOH . 
I 5 HOH B 31 2033 65 HOH HOH . 
I 5 HOH B 32 2034 66 HOH HOH . 
I 5 HOH B 33 2035 67 HOH HOH . 
I 5 HOH B 34 2036 73 HOH HOH . 
I 5 HOH B 35 2037 77 HOH HOH . 
I 5 HOH B 36 2038 78 HOH HOH . 
I 5 HOH B 37 2039 81 HOH HOH . 
I 5 HOH B 38 2040 84 HOH HOH . 
I 5 HOH B 39 2041 86 HOH HOH . 
I 5 HOH B 40 2042 87 HOH HOH . 
I 5 HOH B 41 2043 88 HOH HOH . 
I 5 HOH B 42 2044 90 HOH HOH . 
I 5 HOH B 43 2045 92 HOH HOH . 
I 5 HOH B 44 2046 94 HOH HOH . 
I 5 HOH B 45 2047 96 HOH HOH . 
I 5 HOH B 46 2048 99 HOH HOH . 
I 5 HOH B 47 2049 100 HOH HOH . 
I 5 HOH B 48 2050 101 HOH HOH . 
I 5 HOH B 49 2051 102 HOH HOH . 
I 5 HOH B 50 2052 108 HOH HOH . 
I 5 HOH B 51 2053 112 HOH HOH . 
I 5 HOH B 52 2054 113 HOH HOH . 
I 5 HOH B 53 2055 116 HOH HOH . 
I 5 HOH B 54 2056 117 HOH HOH . 
I 5 HOH B 55 2057 118 HOH HOH . 
I 5 HOH B 56 2058 126 HOH HOH . 
I 5 HOH B 57 2059 129 HOH HOH . 
I 5 HOH B 58 2060 130 HOH HOH . 
I 5 HOH B 59 2061 131 HOH HOH . 
I 5 HOH B 60 2062 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -25.569 4.022 -12.608 1 51.92 ? C1 GOL 1002 B 1 
HETATM 2 O O1 GOL . . . G 4 -24.329 3.966 -11.929 1 48.81 ? O1 GOL 1002 B 1 
HETATM 3 C C2 GOL . . . G 4 -26.477 5.08 -11.983 1 52.49 ? C2 GOL 1002 B 1 
HETATM 4 O O2 GOL . . . G 4 -25.808 6.322 -11.851 1 52.96 ? O2 GOL 1002 B 1 
HETATM 5 C C3 GOL . . . G 4 -27.741 5.252 -12.812 1 53.15 ? C3 GOL 1002 B 1 
HETATM 6 O O3 GOL . . . G 4 -27.801 6.544 -13.382 1 53.12 ? O3 GOL 1002 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#