data_2RL2 # _model_server_result.job_id YZktwWXjps2Q07zDR0-VEw _model_server_result.datetime_utc '2024-11-28 17:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":425}' # _entry.id 2RL2 # _exptl.entry_id 2RL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.074 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RL2 _cell.length_a 63.694 _cell.length_b 124.463 _cell.length_c 126.276 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 63.694 -124.463 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 117 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 117 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id GG6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GG6 _struct_conn.ptnr2_auth_seq_id 425 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.823 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H9 O5 P' _chem_comp.formula_weight 156.074 _chem_comp.id GG6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 GG6 sing 83 n n O1 HO1 GG6 sing 84 n n C2 C3 GG6 sing 85 n n C2 C1 GG6 sing 86 n n C2 H2 GG6 sing 87 n n C3 H31 GG6 sing 88 n n C3 H32 GG6 sing 89 n n C3 H33 GG6 sing 90 n n C1 O2 GG6 sing 91 n n C1 P GG6 sing 92 n n C1 H1 GG6 sing 93 n n O2 HO2 GG6 sing 94 n n P O3 GG6 doub 95 n n P O4 GG6 sing 96 n n P O5 GG6 sing 97 n n O4 HO4 GG6 sing 98 n n O5 HO5 GG6 sing 99 n n # _atom_sites.entry_id 2RL2 _atom_sites.fract_transf_matrix[1][1] 0.0157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 713 713 SO4 SO4 . C 2 SO4 A 1 714 714 SO4 SO4 . D 2 SO4 A 1 715 715 SO4 SO4 . E 3 GG6 A 1 425 425 GG6 GG6 . F 4 UD1 A 1 712 712 UD1 UD1 . G 5 HOH A 1 716 430 HOH TIP . G 5 HOH A 2 717 431 HOH TIP . G 5 HOH A 3 718 432 HOH TIP . G 5 HOH A 4 719 433 HOH TIP . G 5 HOH A 5 720 434 HOH TIP . G 5 HOH A 6 721 435 HOH TIP . G 5 HOH A 7 722 436 HOH TIP . G 5 HOH A 8 723 437 HOH TIP . G 5 HOH A 9 724 438 HOH TIP . G 5 HOH A 10 725 439 HOH TIP . G 5 HOH A 11 726 440 HOH TIP . G 5 HOH A 12 727 441 HOH TIP . G 5 HOH A 13 728 442 HOH TIP . G 5 HOH A 14 729 443 HOH TIP . G 5 HOH A 15 730 444 HOH TIP . G 5 HOH A 16 731 445 HOH TIP . G 5 HOH A 17 732 446 HOH TIP . G 5 HOH A 18 733 447 HOH TIP . G 5 HOH A 19 734 448 HOH TIP . G 5 HOH A 20 735 449 HOH TIP . G 5 HOH A 21 736 450 HOH TIP . G 5 HOH A 22 737 451 HOH TIP . G 5 HOH A 23 738 452 HOH TIP . G 5 HOH A 24 739 453 HOH TIP . G 5 HOH A 25 740 454 HOH TIP . G 5 HOH A 26 741 455 HOH TIP . G 5 HOH A 27 742 456 HOH TIP . G 5 HOH A 28 743 457 HOH TIP . G 5 HOH A 29 744 458 HOH TIP . G 5 HOH A 30 745 459 HOH TIP . G 5 HOH A 31 746 460 HOH TIP . G 5 HOH A 32 747 461 HOH TIP . G 5 HOH A 33 748 462 HOH TIP . G 5 HOH A 34 749 463 HOH TIP . G 5 HOH A 35 750 464 HOH TIP . G 5 HOH A 36 751 465 HOH TIP . G 5 HOH A 37 752 466 HOH TIP . G 5 HOH A 38 753 467 HOH TIP . G 5 HOH A 39 754 468 HOH TIP . G 5 HOH A 40 755 469 HOH TIP . G 5 HOH A 41 756 470 HOH TIP . G 5 HOH A 42 757 471 HOH TIP . G 5 HOH A 43 758 472 HOH TIP . G 5 HOH A 44 759 473 HOH TIP . G 5 HOH A 45 760 474 HOH TIP . G 5 HOH A 46 761 475 HOH TIP . G 5 HOH A 47 762 476 HOH TIP . G 5 HOH A 48 763 477 HOH TIP . G 5 HOH A 49 764 478 HOH TIP . G 5 HOH A 50 765 479 HOH TIP . G 5 HOH A 51 766 480 HOH TIP . G 5 HOH A 52 767 481 HOH TIP . G 5 HOH A 53 768 482 HOH TIP . G 5 HOH A 54 769 483 HOH TIP . G 5 HOH A 55 770 484 HOH TIP . G 5 HOH A 56 771 485 HOH TIP . G 5 HOH A 57 772 486 HOH TIP . G 5 HOH A 58 773 487 HOH TIP . G 5 HOH A 59 774 488 HOH TIP . G 5 HOH A 60 775 489 HOH TIP . G 5 HOH A 61 776 490 HOH TIP . G 5 HOH A 62 777 491 HOH TIP . G 5 HOH A 63 778 492 HOH TIP . G 5 HOH A 64 779 493 HOH TIP . G 5 HOH A 65 780 494 HOH TIP . G 5 HOH A 66 781 495 HOH TIP . G 5 HOH A 67 782 496 HOH TIP . G 5 HOH A 68 783 497 HOH TIP . G 5 HOH A 69 784 498 HOH TIP . G 5 HOH A 70 785 499 HOH TIP . G 5 HOH A 71 786 500 HOH TIP . G 5 HOH A 72 787 501 HOH TIP . G 5 HOH A 73 788 502 HOH TIP . G 5 HOH A 74 789 503 HOH TIP . G 5 HOH A 75 790 504 HOH TIP . G 5 HOH A 76 791 505 HOH TIP . G 5 HOH A 77 792 506 HOH TIP . G 5 HOH A 78 793 507 HOH TIP . G 5 HOH A 79 794 508 HOH TIP . G 5 HOH A 80 795 509 HOH TIP . G 5 HOH A 81 796 510 HOH TIP . G 5 HOH A 82 797 511 HOH TIP . G 5 HOH A 83 798 512 HOH TIP . G 5 HOH A 84 799 513 HOH TIP . G 5 HOH A 85 800 514 HOH TIP . G 5 HOH A 86 801 515 HOH TIP . G 5 HOH A 87 802 516 HOH TIP . G 5 HOH A 88 803 517 HOH TIP . G 5 HOH A 89 804 518 HOH TIP . G 5 HOH A 90 805 519 HOH TIP . G 5 HOH A 91 806 520 HOH TIP . G 5 HOH A 92 807 521 HOH TIP . G 5 HOH A 93 808 522 HOH TIP . G 5 HOH A 94 809 523 HOH TIP . G 5 HOH A 95 810 524 HOH TIP . G 5 HOH A 96 811 525 HOH TIP . G 5 HOH A 97 812 526 HOH TIP . G 5 HOH A 98 813 527 HOH TIP . G 5 HOH A 99 814 528 HOH TIP . G 5 HOH A 100 815 529 HOH TIP . G 5 HOH A 101 816 530 HOH TIP . G 5 HOH A 102 817 531 HOH TIP . G 5 HOH A 103 818 532 HOH TIP . G 5 HOH A 104 819 533 HOH TIP . G 5 HOH A 105 820 534 HOH TIP . G 5 HOH A 106 821 535 HOH TIP . G 5 HOH A 107 822 536 HOH TIP . G 5 HOH A 108 823 537 HOH TIP . G 5 HOH A 109 824 538 HOH TIP . G 5 HOH A 110 825 539 HOH TIP . G 5 HOH A 111 826 540 HOH TIP . G 5 HOH A 112 827 541 HOH TIP . G 5 HOH A 113 828 542 HOH TIP . G 5 HOH A 114 829 543 HOH TIP . G 5 HOH A 115 830 544 HOH TIP . G 5 HOH A 116 831 545 HOH TIP . G 5 HOH A 117 832 546 HOH TIP . G 5 HOH A 118 833 547 HOH TIP . G 5 HOH A 119 834 548 HOH TIP . G 5 HOH A 120 835 549 HOH TIP . G 5 HOH A 121 836 550 HOH TIP . G 5 HOH A 122 837 551 HOH TIP . G 5 HOH A 123 838 552 HOH TIP . G 5 HOH A 124 839 553 HOH TIP . G 5 HOH A 125 840 554 HOH TIP . G 5 HOH A 126 841 555 HOH TIP . G 5 HOH A 127 842 556 HOH TIP . G 5 HOH A 128 843 557 HOH TIP . G 5 HOH A 129 844 558 HOH TIP . G 5 HOH A 130 845 559 HOH TIP . G 5 HOH A 131 846 560 HOH TIP . G 5 HOH A 132 847 561 HOH TIP . G 5 HOH A 133 848 562 HOH TIP . G 5 HOH A 134 849 563 HOH TIP . G 5 HOH A 135 850 564 HOH TIP . G 5 HOH A 136 851 565 HOH TIP . G 5 HOH A 137 852 566 HOH TIP . G 5 HOH A 138 853 567 HOH TIP . G 5 HOH A 139 854 568 HOH TIP . G 5 HOH A 140 855 569 HOH TIP . G 5 HOH A 141 856 570 HOH TIP . G 5 HOH A 142 857 571 HOH TIP . G 5 HOH A 143 858 572 HOH TIP . G 5 HOH A 144 859 573 HOH TIP . G 5 HOH A 145 860 574 HOH TIP . G 5 HOH A 146 861 575 HOH TIP . G 5 HOH A 147 862 576 HOH TIP . G 5 HOH A 148 863 577 HOH TIP . G 5 HOH A 149 864 578 HOH TIP . G 5 HOH A 150 865 579 HOH TIP . G 5 HOH A 151 866 580 HOH TIP . G 5 HOH A 152 867 581 HOH TIP . G 5 HOH A 153 868 582 HOH TIP . G 5 HOH A 154 869 583 HOH TIP . G 5 HOH A 155 870 584 HOH TIP . G 5 HOH A 156 871 585 HOH TIP . G 5 HOH A 157 872 586 HOH TIP . G 5 HOH A 158 873 587 HOH TIP . G 5 HOH A 159 874 588 HOH TIP . G 5 HOH A 160 875 589 HOH TIP . G 5 HOH A 161 876 590 HOH TIP . G 5 HOH A 162 877 591 HOH TIP . G 5 HOH A 163 878 592 HOH TIP . G 5 HOH A 164 879 593 HOH TIP . G 5 HOH A 165 880 594 HOH TIP . G 5 HOH A 166 881 595 HOH TIP . G 5 HOH A 167 882 596 HOH TIP . G 5 HOH A 168 883 598 HOH TIP . G 5 HOH A 169 884 599 HOH TIP . G 5 HOH A 170 885 600 HOH TIP . G 5 HOH A 171 886 601 HOH TIP . G 5 HOH A 172 887 602 HOH TIP . G 5 HOH A 173 888 603 HOH TIP . G 5 HOH A 174 889 604 HOH TIP . G 5 HOH A 175 890 605 HOH TIP . G 5 HOH A 176 891 606 HOH TIP . G 5 HOH A 177 892 607 HOH TIP . G 5 HOH A 178 893 608 HOH TIP . G 5 HOH A 179 894 609 HOH TIP . G 5 HOH A 180 895 610 HOH TIP . G 5 HOH A 181 896 611 HOH TIP . G 5 HOH A 182 897 612 HOH TIP . G 5 HOH A 183 898 613 HOH TIP . G 5 HOH A 184 899 614 HOH TIP . G 5 HOH A 185 900 615 HOH TIP . G 5 HOH A 186 901 616 HOH TIP . G 5 HOH A 187 902 617 HOH TIP . G 5 HOH A 188 903 618 HOH TIP . G 5 HOH A 189 904 619 HOH TIP . G 5 HOH A 190 905 620 HOH TIP . G 5 HOH A 191 906 621 HOH TIP . G 5 HOH A 192 907 622 HOH TIP . G 5 HOH A 193 908 623 HOH TIP . G 5 HOH A 194 909 624 HOH TIP . G 5 HOH A 195 910 625 HOH TIP . G 5 HOH A 196 911 626 HOH TIP . G 5 HOH A 197 912 627 HOH TIP . G 5 HOH A 198 913 628 HOH TIP . G 5 HOH A 199 914 629 HOH TIP . G 5 HOH A 200 915 630 HOH TIP . G 5 HOH A 201 916 631 HOH TIP . G 5 HOH A 202 917 632 HOH TIP . G 5 HOH A 203 918 633 HOH TIP . G 5 HOH A 204 919 634 HOH TIP . G 5 HOH A 205 920 635 HOH TIP . G 5 HOH A 206 921 636 HOH TIP . G 5 HOH A 207 922 637 HOH TIP . G 5 HOH A 208 923 638 HOH TIP . G 5 HOH A 209 924 639 HOH TIP . G 5 HOH A 210 925 640 HOH TIP . G 5 HOH A 211 926 641 HOH TIP . G 5 HOH A 212 927 642 HOH TIP . G 5 HOH A 213 928 643 HOH TIP . G 5 HOH A 214 929 644 HOH TIP . G 5 HOH A 215 930 645 HOH TIP . G 5 HOH A 216 931 646 HOH TIP . G 5 HOH A 217 932 647 HOH TIP . G 5 HOH A 218 933 648 HOH TIP . G 5 HOH A 219 934 649 HOH TIP . G 5 HOH A 220 935 650 HOH TIP . G 5 HOH A 221 936 651 HOH TIP . G 5 HOH A 222 937 652 HOH TIP . G 5 HOH A 223 938 653 HOH TIP . G 5 HOH A 224 939 654 HOH TIP . G 5 HOH A 225 940 655 HOH TIP . G 5 HOH A 226 941 656 HOH TIP . G 5 HOH A 227 942 657 HOH TIP . G 5 HOH A 228 943 658 HOH TIP . G 5 HOH A 229 944 659 HOH TIP . G 5 HOH A 230 945 660 HOH TIP . G 5 HOH A 231 946 661 HOH TIP . G 5 HOH A 232 947 662 HOH TIP . G 5 HOH A 233 948 663 HOH TIP . G 5 HOH A 234 949 664 HOH TIP . G 5 HOH A 235 950 665 HOH TIP . G 5 HOH A 236 951 666 HOH TIP . G 5 HOH A 237 952 495 HOH TIP . G 5 HOH A 238 953 496 HOH TIP . G 5 HOH A 239 954 497 HOH TIP . G 5 HOH A 240 955 498 HOH TIP . G 5 HOH A 241 956 499 HOH TIP . G 5 HOH A 242 957 500 HOH TIP . G 5 HOH A 243 958 501 HOH TIP . G 5 HOH A 244 959 502 HOH TIP . G 5 HOH A 245 960 503 HOH TIP . G 5 HOH A 246 961 504 HOH TIP . G 5 HOH A 247 962 505 HOH TIP . G 5 HOH A 248 963 506 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GG6 . . . E 3 29.251 -55.069 43.533 1 50.93 ? C2 GG6 425 A 1 HETATM 2 C C3 GG6 . . . E 3 28.204 -54.015 43.217 1 48.04 ? C3 GG6 425 A 1 HETATM 3 C C1 GG6 . . . E 3 30.132 -55.512 42.375 1 58.48 ? C1 GG6 425 A 1 HETATM 4 O O2 GG6 . . . E 3 29.97 -56.901 42.129 1 59.96 ? O2 GG6 425 A 1 HETATM 5 P P GG6 . . . E 3 31.92 -55.22 42.582 1 65.48 ? P GG6 425 A 1 HETATM 6 O O3 GG6 . . . E 3 32.732 -55.602 41.428 1 66.15 ? O3 GG6 425 A 1 HETATM 7 O O4 GG6 . . . E 3 32.248 -53.802 42.725 1 65.19 ? O4 GG6 425 A 1 HETATM 8 O O5 GG6 . . . E 3 32.442 -55.907 43.752 1 64.67 ? O5 GG6 425 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #