data_2RMK
#
_model_server_result.job_id            SjVaWAUKtB8sQRC1I-6gog 
_model_server_result.datetime_utc      '2024-10-12 15:27:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":193}' 
#
_entry.id    2RMK 
#
_exptl.entry_id    2RMK 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 C MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc3 D O2B GCP . A GCP 193 1_555 C MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc4 D O2G GCP . A GCP 193 1_555 C MG MG . A MG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 C MG MG . A MG 194 1_555 E O HOH . A HOH 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc6 C MG MG . A MG 194 1_555 E O HOH . A HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                GCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GCP doub 83 n n 
PG O2G GCP sing 84 n n 
PG O3G GCP sing 85 n n 
PG C3B GCP sing 86 n n 
O2G HOG2 GCP sing 87 n n 
O3G HOG3 GCP sing 88 n n 
C3B PB GCP sing 89 n n 
C3B H3B1 GCP sing 90 n n 
C3B H3B2 GCP sing 91 n n 
PB O1B GCP doub 92 n n 
PB O2B GCP sing 93 n n 
PB O3A GCP sing 94 n n 
O2B HOB2 GCP sing 95 n n 
O3A PA GCP sing 96 n n 
PA O1A GCP doub 97 n n 
PA O2A GCP sing 98 n n 
PA O5' GCP sing 99 n n 
O2A HOA2 GCP sing 100 n n 
O5' C5' GCP sing 101 n n 
C5' C4' GCP sing 102 n n 
C5' "H5'2" GCP sing 103 n n 
C5' "H5'1" GCP sing 104 n n 
C4' O4' GCP sing 105 n n 
C4' C3' GCP sing 106 n n 
C4' H4' GCP sing 107 n n 
O4' C1' GCP sing 108 n n 
C3' O3' GCP sing 109 n n 
C3' C2' GCP sing 110 n n 
C3' H3' GCP sing 111 n n 
O3' HO3' GCP sing 112 n n 
C2' O2' GCP sing 113 n n 
C2' C1' GCP sing 114 n n 
C2' H2' GCP sing 115 n n 
O2' HO2' GCP sing 116 n n 
C1' N9 GCP sing 117 n n 
C1' H1' GCP sing 118 n n 
N9 C8 GCP sing 119 n y 
N9 C4 GCP sing 120 n y 
C8 N7 GCP doub 121 n y 
C8 H8 GCP sing 122 n n 
N7 C5 GCP sing 123 n y 
C5 C6 GCP sing 124 n y 
C5 C4 GCP doub 125 n y 
C6 O6 GCP doub 126 n n 
C6 N1 GCP sing 127 n y 
N1 C2 GCP sing 128 n y 
N1 HN1 GCP sing 129 n n 
C2 N2 GCP sing 130 n n 
C2 N3 GCP doub 131 n y 
N2 HN21 GCP sing 132 n n 
N2 HN22 GCP sing 133 n n 
N3 C4 GCP sing 134 n y 
#
_atom_sites.entry_id                     2RMK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 194 194 MG MG . 
D 4 GCP A 1 193 193 GCP GCP . 
E 5 HOH A 1 195 195 HOH HOH . 
E 5 HOH A 2 196 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GCP . . . D 4 2.933 -6.536 -4.003 1 0 ? PG GCP 193 A 1 
HETATM 2 O O1G GCP . . . D 4 2.322 -6.718 -2.662 1 0 ? O1G GCP 193 A 1 
HETATM 3 O O2G GCP . . . D 4 3.005 -5 -4.412 1 0 ? O2G GCP 193 A 1 
HETATM 4 O O3G GCP . . . D 4 4.36 -7.237 -4.104 1 0 ? O3G GCP 193 A 1 
HETATM 5 C C3B GCP . . . D 4 1.937 -7.315 -5.308 1 0 ? C3B GCP 193 A 1 
HETATM 6 P PB GCP . . . D 4 0.175 -6.952 -5.039 1 0 ? PB GCP 193 A 1 
HETATM 7 O O1B GCP . . . D 4 -0.199 -7.406 -3.677 1 0 ? O1B GCP 193 A 1 
HETATM 8 O O2B GCP . . . D 4 -0.092 -5.541 -5.418 1 0 ? O2B GCP 193 A 1 
HETATM 9 O O3A GCP . . . D 4 -0.529 -7.911 -6.101 1 0 ? O3A GCP 193 A 1 
HETATM 10 P PA GCP . . . D 4 -1.758 -7.381 -6.965 1 0 ? PA GCP 193 A 1 
HETATM 11 O O1A GCP . . . D 4 -1.244 -6.513 -8.049 1 0 ? O1A GCP 193 A 1 
HETATM 12 O O2A GCP . . . D 4 -2.775 -6.831 -6.045 1 0 ? O2A GCP 193 A 1 
HETATM 13 O O5' GCP . . . D 4 -2.324 -8.725 -7.612 1 0 ? O5' GCP 193 A 1 
HETATM 14 C C5' GCP . . . D 4 -2.941 -9.725 -6.804 1 0 ? C5' GCP 193 A 1 
HETATM 15 C C4' GCP . . . D 4 -3.393 -10.883 -7.662 1 0 ? C4' GCP 193 A 1 
HETATM 16 O O4' GCP . . . D 4 -4.419 -11.624 -6.944 1 0 ? O4' GCP 193 A 1 
HETATM 17 C C3' GCP . . . D 4 -4.036 -10.499 -8.988 1 0 ? C3' GCP 193 A 1 
HETATM 18 O O3' GCP . . . D 4 -3.065 -10.425 -10.025 1 0 ? O3' GCP 193 A 1 
HETATM 19 C C2' GCP . . . D 4 -5.033 -11.624 -9.231 1 0 ? C2' GCP 193 A 1 
HETATM 20 O O2' GCP . . . D 4 -4.409 -12.78 -9.76 1 0 ? O2' GCP 193 A 1 
HETATM 21 C C1' GCP . . . D 4 -5.505 -11.909 -7.808 1 0 ? C1' GCP 193 A 1 
HETATM 22 N N9 GCP . . . D 4 -6.648 -11.102 -7.394 1 0 ? N9 GCP 193 A 1 
HETATM 23 C C8 GCP . . . D 4 -6.623 -9.96 -6.631 1 0 ? C8 GCP 193 A 1 
HETATM 24 N N7 GCP . . . D 4 -7.809 -9.466 -6.404 1 0 ? N7 GCP 193 A 1 
HETATM 25 C C5 GCP . . . D 4 -8.673 -10.336 -7.058 1 0 ? C5 GCP 193 A 1 
HETATM 26 C C6 GCP . . . D 4 -10.087 -10.316 -7.168 1 0 ? C6 GCP 193 A 1 
HETATM 27 O O6 GCP . . . D 4 -10.881 -9.497 -6.692 1 0 ? O6 GCP 193 A 1 
HETATM 28 N N1 GCP . . . D 4 -10.566 -11.386 -7.924 1 0 ? N1 GCP 193 A 1 
HETATM 29 C C2 GCP . . . D 4 -9.768 -12.347 -8.499 1 0 ? C2 GCP 193 A 1 
HETATM 30 N N2 GCP . . . D 4 -10.402 -13.293 -9.204 1 0 ? N2 GCP 193 A 1 
HETATM 31 N N3 GCP . . . D 4 -8.448 -12.376 -8.403 1 0 ? N3 GCP 193 A 1 
HETATM 32 C C4 GCP . . . D 4 -7.971 -11.348 -7.676 1 0 ? C4 GCP 193 A 1 
HETATM 33 H H3B1 GCP . . . D 4 2.091 -8.383 -5.289 1 0 ? H3B1 GCP 193 A 1 
HETATM 34 H H3B2 GCP . . . D 4 2.24 -6.928 -6.27 1 0 ? H3B2 GCP 193 A 1 
HETATM 35 H "H5'2" GCP . . . D 4 -2.231 -10.09 -6.063 1 0 ? "H5'2" GCP 193 A 1 
HETATM 36 H "H5'1" GCP . . . D 4 -3.805 -9.301 -6.29 1 0 ? "H5'1" GCP 193 A 1 
HETATM 37 H H4' GCP . . . D 4 -2.513 -11.479 -7.9 1 0 ? H4' GCP 193 A 1 
HETATM 38 H H3' GCP . . . D 4 -4.507 -9.518 -8.943 1 0 ? H3' GCP 193 A 1 
HETATM 39 H HO3' GCP . . . D 4 -2.708 -9.538 -10.018 1 0 ? HO3' GCP 193 A 1 
HETATM 40 H H2' GCP . . . D 4 -5.856 -11.272 -9.856 1 0 ? H2' GCP 193 A 1 
HETATM 41 H HO2' GCP . . . D 4 -3.492 -12.561 -9.92 1 0 ? HO2' GCP 193 A 1 
HETATM 42 H H1' GCP . . . D 4 -5.761 -12.958 -7.662 1 0 ? H1' GCP 193 A 1 
HETATM 43 H H8 GCP . . . D 4 -5.713 -9.515 -6.258 1 0 ? H8 GCP 193 A 1 
HETATM 44 H HN1 GCP . . . D 4 -11.568 -11.465 -8.052 1 0 ? HN1 GCP 193 A 1 
HETATM 45 H HN21 GCP . . . D 4 -9.875 -14.025 -9.658 1 0 ? HN21 GCP 193 A 1 
HETATM 46 H HN22 GCP . . . D 4 -11.41 -13.272 -9.283 1 0 ? HN22 GCP 193 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    392 
_model_server_stats.query_time_ms           6758 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           46 
#