data_2ROK
#
_model_server_result.job_id            r7EGUE_Edl-KiuX0oLTCzw 
_model_server_result.datetime_utc      '2024-12-26 23:13:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rok 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":524}' 
#
_entry.id    2ROK 
#
_exptl.entry_id    2ROK 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              443.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            P 
_struct_conn.ptnr1_label_comp_id            7MG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             7MG 
_struct_conn.ptnr1_auth_seq_id              523 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            O3B 
_struct_conn.ptnr2_label_comp_id            GDP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             GDP 
_struct_conn.ptnr2_auth_seq_id              524 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.562 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H15 N5 O11 P2' 
_chem_comp.formula_weight    443.201 
_chem_comp.id                GDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B GDP doub 115 n n 
PB O2B GDP sing 116 n n 
PB O3B GDP sing 117 n n 
PB O3A GDP sing 118 n n 
O2B HOB2 GDP sing 119 n n 
O3B HOB3 GDP sing 120 n n 
O3A PA GDP sing 121 n n 
PA O1A GDP doub 122 n n 
PA O2A GDP sing 123 n n 
PA O5' GDP sing 124 n n 
O2A HOA2 GDP sing 125 n n 
O5' C5' GDP sing 126 n n 
C5' C4' GDP sing 127 n n 
C5' H5' GDP sing 128 n n 
C5' "H5''" GDP sing 129 n n 
C4' O4' GDP sing 130 n n 
C4' C3' GDP sing 131 n n 
C4' H4' GDP sing 132 n n 
O4' C1' GDP sing 133 n n 
C3' O3' GDP sing 134 n n 
C3' C2' GDP sing 135 n n 
C3' H3' GDP sing 136 n n 
O3' HO3' GDP sing 137 n n 
C2' O2' GDP sing 138 n n 
C2' C1' GDP sing 139 n n 
C2' H2' GDP sing 140 n n 
O2' HO2' GDP sing 141 n n 
C1' N9 GDP sing 142 n n 
C1' H1' GDP sing 143 n n 
N9 C8 GDP sing 144 n y 
N9 C4 GDP sing 145 n y 
C8 N7 GDP doub 146 n y 
C8 H8 GDP sing 147 n n 
N7 C5 GDP sing 148 n y 
C5 C6 GDP sing 149 n n 
C5 C4 GDP doub 150 n y 
C6 O6 GDP doub 151 n n 
C6 N1 GDP sing 152 n n 
N1 C2 GDP sing 153 n n 
N1 HN1 GDP sing 154 n n 
C2 N2 GDP sing 155 n n 
C2 N3 GDP doub 156 n n 
N2 HN21 GDP sing 157 n n 
N2 HN22 GDP sing 158 n n 
N3 C4 GDP sing 159 n n 
#
_atom_sites.entry_id                     2ROK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 7MG A 1 523 523 7MG 7MG . 
C 3 GDP A 1 524 524 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB GDP . . . C 3 -10.278 -4.752 13.958 1 0 ? PB GDP 524 A 1 
HETATM 2 O O1B GDP . . . C 3 -9.452 -5.896 14.425 1 0 ? O1B GDP 524 A 1 
HETATM 3 O O2B GDP . . . C 3 -11.753 -4.936 13.885 1 0 ? O2B GDP 524 A 1 
HETATM 4 O O3B GDP . . . C 3 -9.816 -4.529 12.487 1 0 ? O3B GDP 524 A 1 
HETATM 5 O O3A GDP . . . C 3 -9.927 -3.467 14.726 1 0 ? O3A GDP 524 A 1 
HETATM 6 P PA GDP . . . C 3 -9.811 -3.418 16.262 1 0 ? PA GDP 524 A 1 
HETATM 7 O O1A GDP . . . C 3 -8.395 -3.634 16.667 1 0 ? O1A GDP 524 A 1 
HETATM 8 O O2A GDP . . . C 3 -10.875 -4.205 16.947 1 0 ? O2A GDP 524 A 1 
HETATM 9 O O5' GDP . . . C 3 -10.141 -1.866 16.6 1 0 ? O5' GDP 524 A 1 
HETATM 10 C C5' GDP . . . C 3 -9.558 -0.783 15.875 1 0 ? C5' GDP 524 A 1 
HETATM 11 C C4' GDP . . . C 3 -8.127 -0.44 16.324 1 0 ? C4' GDP 524 A 1 
HETATM 12 O O4' GDP . . . C 3 -7.625 0.56 15.44 1 0 ? O4' GDP 524 A 1 
HETATM 13 C C3' GDP . . . C 3 -8.069 0.122 17.755 1 0 ? C3' GDP 524 A 1 
HETATM 14 O O3' GDP . . . C 3 -6.836 -0.227 18.392 1 0 ? O3' GDP 524 A 1 
HETATM 15 C C2' GDP . . . C 3 -8.141 1.629 17.478 1 0 ? C2' GDP 524 A 1 
HETATM 16 O O2' GDP . . . C 3 -7.612 2.426 18.534 1 0 ? O2' GDP 524 A 1 
HETATM 17 C C1' GDP . . . C 3 -7.323 1.725 16.188 1 0 ? C1' GDP 524 A 1 
HETATM 18 N N9 GDP . . . C 3 -7.638 2.938 15.404 1 0 ? N9 GDP 524 A 1 
HETATM 19 C C8 GDP . . . C 3 -8.858 3.366 14.948 1 0 ? C8 GDP 524 A 1 
HETATM 20 N N7 GDP . . . C 3 -8.839 4.554 14.396 1 0 ? N7 GDP 524 A 1 
HETATM 21 C C5 GDP . . . C 3 -7.49 4.933 14.47 1 0 ? C5 GDP 524 A 1 
HETATM 22 C C6 GDP . . . C 3 -6.795 6.119 14.029 1 0 ? C6 GDP 524 A 1 
HETATM 23 O O6 GDP . . . C 3 -7.243 7.138 13.501 1 0 ? O6 GDP 524 A 1 
HETATM 24 N N1 GDP . . . C 3 -5.427 6.056 14.219 1 0 ? N1 GDP 524 A 1 
HETATM 25 C C2 GDP . . . C 3 -4.794 4.999 14.784 1 0 ? C2 GDP 524 A 1 
HETATM 26 N N2 GDP . . . C 3 -3.493 5.055 14.852 1 0 ? N2 GDP 524 A 1 
HETATM 27 N N3 GDP . . . C 3 -5.396 3.903 15.239 1 0 ? N3 GDP 524 A 1 
HETATM 28 C C4 GDP . . . C 3 -6.748 3.924 15.049 1 0 ? C4 GDP 524 A 1 
HETATM 29 H H5' GDP . . . C 3 -10.185 0.101 16 1 0 ? H5' GDP 524 A 1 
HETATM 30 H "H5''" GDP . . . C 3 -9.537 -1.015 14.808 1 0 ? "H5''" GDP 524 A 1 
HETATM 31 H H4' GDP . . . C 3 -7.504 -1.33 16.257 1 0 ? H4' GDP 524 A 1 
HETATM 32 H H3' GDP . . . C 3 -8.924 -0.206 18.351 1 0 ? H3' GDP 524 A 1 
HETATM 33 H HO3' GDP . . . C 3 -6.865 -1.18 18.62 1 0 ? HO3' GDP 524 A 1 
HETATM 34 H H2' GDP . . . C 3 -9.18 1.904 17.282 1 0 ? H2' GDP 524 A 1 
HETATM 35 H HO2' GDP . . . C 3 -6.891 1.912 18.955 1 0 ? HO2' GDP 524 A 1 
HETATM 36 H H1' GDP . . . C 3 -6.261 1.724 16.451 1 0 ? H1' GDP 524 A 1 
HETATM 37 H H8 GDP . . . C 3 -9.745 2.752 15.042 1 0 ? H8 GDP 524 A 1 
HETATM 38 H HN1 GDP . . . C 3 -4.867 6.82 13.874 1 0 ? HN1 GDP 524 A 1 
HETATM 39 H HN21 GDP . . . C 3 -3.003 5.838 14.449 1 0 ? HN21 GDP 524 A 1 
HETATM 40 H HN22 GDP . . . C 3 -3.013 4.244 15.247 1 0 ? HN22 GDP 524 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           5931 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#