data_2RQF # _model_server_result.job_id jn-uKfxG8Ug_gXxzwh5IFQ _model_server_result.datetime_utc '2025-04-25 18:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2RQF # _exptl.entry_id 2RQF _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 266.376 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 9 1_555 A SG CYS 18 A CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf2 A SG CYS 153 A CYS 151 1_555 A SG CYS 196 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C16 H26 O3' _chem_comp.formula_weight 266.376 _chem_comp.id JH3 _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'JH III;juvenile hormone III' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 JH3 doub 171 n n C1 O1 JH3 sing 172 n n C1 C2 JH3 sing 173 n n O1 CM JH3 sing 174 n n CM HM JH3 sing 175 n n CM HMA JH3 sing 176 n n CM HMB JH3 sing 177 n n C2 C3 JH3 doub 178 e n C2 H2 JH3 sing 179 n n C3 C3' JH3 sing 180 n n C3 C4 JH3 sing 181 n n C3' H3' JH3 sing 182 n n C3' "H3'A" JH3 sing 183 n n C3' "H3'B" JH3 sing 184 n n C4 C5 JH3 sing 185 n n C4 H4 JH3 sing 186 n n C4 H4A JH3 sing 187 n n C5 C6 JH3 sing 188 n n C5 H5 JH3 sing 189 n n C5 H5A JH3 sing 190 n n C6 C7 JH3 doub 191 e n C6 H6 JH3 sing 192 n n C7 C7' JH3 sing 193 n n C7 C8 JH3 sing 194 n n C7' H7' JH3 sing 195 n n C7' "H7'A" JH3 sing 196 n n C7' "H7'B" JH3 sing 197 n n C8 C9 JH3 sing 198 n n C8 H8 JH3 sing 199 n n C8 H8A JH3 sing 200 n n C9 CA JH3 sing 201 n n C9 H9 JH3 sing 202 n n C9 H9A JH3 sing 203 n n CA O3 JH3 sing 204 n n CA CB JH3 sing 205 n n CA HA JH3 sing 206 n n O3 CB JH3 sing 207 n n CB CB' JH3 sing 208 n n CB CC JH3 sing 209 n n CB' HB' JH3 sing 210 n n CB' "HB'A" JH3 sing 211 n n CB' "HB'B" JH3 sing 212 n n CC HC JH3 sing 213 n n CC HCA JH3 sing 214 n n CC HCB JH3 sing 215 n n # _atom_sites.entry_id 2RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id JH3 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id JH3 _pdbx_nonpoly_scheme.auth_mon_id JH3 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JH3 . . . B 2 0.237 10.926 4.904 1 0 ? C1 JH3 300 A 1 HETATM 2 O O2 JH3 . . . B 2 1.371 11.105 4.444 1 0 ? O2 JH3 300 A 1 HETATM 3 O O1 JH3 . . . B 2 -0.342 9.689 5.151 1 0 ? O1 JH3 300 A 1 HETATM 4 C CM JH3 . . . B 2 0.428 8.505 4.85 1 0 ? CM JH3 300 A 1 HETATM 5 C C2 JH3 . . . B 2 -0.716 12.049 5.282 1 0 ? C2 JH3 300 A 1 HETATM 6 C C3 JH3 . . . B 2 -0.885 12.668 6.467 1 0 ? C3 JH3 300 A 1 HETATM 7 C C3' JH3 . . . B 2 -0.083 12.34 7.717 1 0 ? C3' JH3 300 A 1 HETATM 8 C C4 JH3 . . . B 2 -1.911 13.792 6.6 1 0 ? C4 JH3 300 A 1 HETATM 9 C C5 JH3 . . . B 2 -1.731 14.89 5.529 1 0 ? C5 JH3 300 A 1 HETATM 10 C C6 JH3 . . . B 2 -0.331 15.48 5.542 1 0 ? C6 JH3 300 A 1 HETATM 11 C C7 JH3 . . . B 2 0.67 15.255 4.671 1 0 ? C7 JH3 300 A 1 HETATM 12 C C7' JH3 . . . B 2 0.523 14.356 3.452 1 0 ? C7' JH3 300 A 1 HETATM 13 C C8 JH3 . . . B 2 2.014 15.958 4.849 1 0 ? C8 JH3 300 A 1 HETATM 14 C C9 JH3 . . . B 2 3.181 14.973 5.069 1 0 ? C9 JH3 300 A 1 HETATM 15 C CA JH3 . . . B 2 4.489 15.465 4.415 1 0 ? CA JH3 300 A 1 HETATM 16 O O3 JH3 . . . B 2 5.038 14.491 3.489 1 0 ? O3 JH3 300 A 1 HETATM 17 C CB JH3 . . . B 2 4.636 15.773 2.946 1 0 ? CB JH3 300 A 1 HETATM 18 C CB' JH3 . . . B 2 5.852 16.604 2.507 1 0 ? CB' JH3 300 A 1 HETATM 19 C CC JH3 . . . B 2 3.476 15.631 1.943 1 0 ? CC JH3 300 A 1 HETATM 20 H HM JH3 . . . B 2 1.428 8.538 5.322 1 0 ? HM JH3 300 A 1 HETATM 21 H HMA JH3 . . . B 2 0.562 8.372 3.76 1 0 ? HMA JH3 300 A 1 HETATM 22 H HMB JH3 . . . B 2 -0.088 7.606 5.233 1 0 ? HMB JH3 300 A 1 HETATM 23 H H2 JH3 . . . B 2 -1.347 12.393 4.46 1 0 ? H2 JH3 300 A 1 HETATM 24 H H3' JH3 . . . B 2 0.626 11.511 7.535 1 0 ? H3' JH3 300 A 1 HETATM 25 H "H3'A" JH3 . . . B 2 0.518 13.194 8.083 1 0 ? "H3'A" JH3 300 A 1 HETATM 26 H "H3'B" JH3 . . . B 2 -0.743 12.034 8.55 1 0 ? "H3'B" JH3 300 A 1 HETATM 27 H H4 JH3 . . . B 2 -1.842 14.241 7.61 1 0 ? H4 JH3 300 A 1 HETATM 28 H H4A JH3 . . . B 2 -2.941 13.387 6.55 1 0 ? H4A JH3 300 A 1 HETATM 29 H H5 JH3 . . . B 2 -2.459 15.704 5.703 1 0 ? H5 JH3 300 A 1 HETATM 30 H H5A JH3 . . . B 2 -1.975 14.494 4.524 1 0 ? H5A JH3 300 A 1 HETATM 31 H H6 JH3 . . . B 2 -0.133 16.146 6.384 1 0 ? H6 JH3 300 A 1 HETATM 32 H H7' JH3 . . . B 2 1.297 13.566 3.444 1 0 ? H7' JH3 300 A 1 HETATM 33 H "H7'A" JH3 . . . B 2 -0.457 13.845 3.412 1 0 ? "H7'A" JH3 300 A 1 HETATM 34 H "H7'B" JH3 . . . B 2 0.622 14.924 2.509 1 0 ? "H7'B" JH3 300 A 1 HETATM 35 H H8 JH3 . . . B 2 1.958 16.661 5.702 1 0 ? H8 JH3 300 A 1 HETATM 36 H H8A JH3 . . . B 2 2.233 16.605 3.976 1 0 ? H8A JH3 300 A 1 HETATM 37 H H9 JH3 . . . B 2 2.924 13.986 4.642 1 0 ? H9 JH3 300 A 1 HETATM 38 H H9A JH3 . . . B 2 3.318 14.803 6.153 1 0 ? H9A JH3 300 A 1 HETATM 39 H HA JH3 . . . B 2 5.268 15.878 5.083 1 0 ? HA JH3 300 A 1 HETATM 40 H HB' JH3 . . . B 2 6.394 17.014 3.38 1 0 ? HB' JH3 300 A 1 HETATM 41 H "HB'A" JH3 . . . B 2 5.576 17.464 1.868 1 0 ? "HB'A" JH3 300 A 1 HETATM 42 H "HB'B" JH3 . . . B 2 6.569 15.99 1.934 1 0 ? "HB'B" JH3 300 A 1 HETATM 43 H HC JH3 . . . B 2 2.948 14.668 2.076 1 0 ? HC JH3 300 A 1 HETATM 44 H HCA JH3 . . . B 2 2.712 16.422 2.043 1 0 ? HCA JH3 300 A 1 HETATM 45 H HCB JH3 . . . B 2 3.846 15.66 0.902 1 0 ? HCB JH3 300 A 1 # _model_server_stats.io_time_ms 141 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 104 _model_server_stats.query_time_ms 6585 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #