data_2RTD # _model_server_result.job_id xbFk5zWlFr4U3pzejmLiog _model_server_result.datetime_utc '2024-11-13 13:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 2RTD # _exptl.entry_id 2RTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTD _cell.length_a 95.04 _cell.length_b 104.82 _cell.length_c 49.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 2RTD _atom_sites.fract_transf_matrix[1][1] 0.010522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTN B 1 300 300 BTN BTN . D 2 BTN D 1 300 300 BTN BTN . E 3 HOH B 1 490 490 HOH HOH . E 3 HOH B 2 506 506 HOH HOH . E 3 HOH B 3 534 534 HOH HOH . E 3 HOH B 4 549 549 HOH HOH . E 3 HOH B 5 605 605 HOH HOH . E 3 HOH B 6 606 606 HOH HOH . E 3 HOH B 7 607 607 HOH HOH . E 3 HOH B 8 609 609 HOH HOH . E 3 HOH B 9 613 613 HOH HOH . E 3 HOH B 10 617 617 HOH HOH . E 3 HOH B 11 619 619 HOH HOH . E 3 HOH B 12 620 620 HOH HOH . E 3 HOH B 13 621 621 HOH HOH . E 3 HOH B 14 628 628 HOH HOH . E 3 HOH B 15 629 629 HOH HOH . E 3 HOH B 16 637 637 HOH HOH . E 3 HOH B 17 639 639 HOH HOH . E 3 HOH B 18 643 643 HOH HOH . E 3 HOH B 19 649 649 HOH HOH . E 3 HOH B 20 653 653 HOH HOH . E 3 HOH B 21 660 660 HOH HOH . E 3 HOH B 22 664 664 HOH HOH . E 3 HOH B 23 669 669 HOH HOH . E 3 HOH B 24 680 680 HOH HOH . E 3 HOH B 25 727 727 HOH HOH . E 3 HOH B 26 742 742 HOH HOH . E 3 HOH B 27 996 996 HOH HOH . E 3 HOH B 28 1015 1015 HOH HOH . E 3 HOH B 29 1078 1078 HOH HOH . E 3 HOH B 30 1082 1082 HOH HOH . E 3 HOH B 31 1255 1255 HOH HOH . E 3 HOH B 32 1390 1390 HOH HOH . E 3 HOH B 33 1415 1415 HOH HOH . E 3 HOH B 34 1462 1462 HOH HOH . E 3 HOH B 35 1471 1471 HOH HOH . E 3 HOH B 36 1506 1506 HOH HOH . E 3 HOH B 37 1529 1529 HOH HOH . E 3 HOH B 38 1573 1573 HOH HOH . E 3 HOH B 39 1585 1585 HOH HOH . E 3 HOH B 40 1605 1605 HOH HOH . E 3 HOH B 41 1658 1658 HOH HOH . E 3 HOH B 42 1689 1689 HOH HOH . E 3 HOH B 43 2018 2018 HOH HOH . E 3 HOH B 44 2019 2019 HOH HOH . E 3 HOH B 45 2024 2024 HOH HOH . E 3 HOH B 46 2037 2037 HOH HOH . E 3 HOH B 47 2055 2055 HOH HOH . E 3 HOH B 48 2064 2064 HOH HOH . E 3 HOH B 49 2098 2098 HOH HOH . E 3 HOH B 50 2106 2106 HOH HOH . E 3 HOH B 51 2150 2150 HOH HOH . E 3 HOH B 52 2154 2154 HOH HOH . E 3 HOH B 53 2200 2200 HOH HOH . E 3 HOH B 54 2217 2217 HOH HOH . E 3 HOH B 55 2227 2227 HOH HOH . E 3 HOH B 56 2254 2254 HOH HOH . E 3 HOH B 57 2298 2298 HOH HOH . E 3 HOH B 58 2299 2299 HOH HOH . F 3 HOH D 1 491 491 HOH HOH . F 3 HOH D 2 492 492 HOH HOH . F 3 HOH D 3 503 503 HOH HOH . F 3 HOH D 4 515 515 HOH HOH . F 3 HOH D 5 527 527 HOH HOH . F 3 HOH D 6 529 529 HOH HOH . F 3 HOH D 7 593 593 HOH HOH . F 3 HOH D 8 597 597 HOH HOH . F 3 HOH D 9 602 602 HOH HOH . F 3 HOH D 10 612 612 HOH HOH . F 3 HOH D 11 622 622 HOH HOH . F 3 HOH D 12 624 624 HOH HOH . F 3 HOH D 13 625 625 HOH HOH . F 3 HOH D 14 626 626 HOH HOH . F 3 HOH D 15 635 635 HOH HOH . F 3 HOH D 16 636 636 HOH HOH . F 3 HOH D 17 641 641 HOH HOH . F 3 HOH D 18 642 642 HOH HOH . F 3 HOH D 19 655 655 HOH HOH . F 3 HOH D 20 656 656 HOH HOH . F 3 HOH D 21 663 663 HOH HOH . F 3 HOH D 22 666 666 HOH HOH . F 3 HOH D 23 697 697 HOH HOH . F 3 HOH D 24 698 698 HOH HOH . F 3 HOH D 25 764 764 HOH HOH . F 3 HOH D 26 802 802 HOH HOH . F 3 HOH D 27 931 931 HOH HOH . F 3 HOH D 28 933 933 HOH HOH . F 3 HOH D 29 944 944 HOH HOH . F 3 HOH D 30 951 951 HOH HOH . F 3 HOH D 31 952 952 HOH HOH . F 3 HOH D 32 968 968 HOH HOH . F 3 HOH D 33 1071 1071 HOH HOH . F 3 HOH D 34 1076 1076 HOH HOH . F 3 HOH D 35 1483 1483 HOH HOH . F 3 HOH D 36 1493 1493 HOH HOH . F 3 HOH D 37 1512 1512 HOH HOH . F 3 HOH D 38 1522 1522 HOH HOH . F 3 HOH D 39 1564 1564 HOH HOH . F 3 HOH D 40 1565 1565 HOH HOH . F 3 HOH D 41 1596 1596 HOH HOH . F 3 HOH D 42 1600 1600 HOH HOH . F 3 HOH D 43 1617 1617 HOH HOH . F 3 HOH D 44 1625 1625 HOH HOH . F 3 HOH D 45 1728 1728 HOH HOH . F 3 HOH D 46 1772 1772 HOH HOH . F 3 HOH D 47 1796 1796 HOH HOH . F 3 HOH D 48 1798 1798 HOH HOH . F 3 HOH D 49 1881 1881 HOH HOH . F 3 HOH D 50 1948 1948 HOH HOH . F 3 HOH D 51 1998 1998 HOH HOH . F 3 HOH D 52 2039 2039 HOH HOH . F 3 HOH D 53 2041 2041 HOH HOH . F 3 HOH D 54 2123 2123 HOH HOH . F 3 HOH D 55 2155 2155 HOH HOH . F 3 HOH D 56 2156 2156 HOH HOH . F 3 HOH D 57 2159 2159 HOH HOH . F 3 HOH D 58 2166 2166 HOH HOH . F 3 HOH D 59 2167 2167 HOH HOH . F 3 HOH D 60 2181 2181 HOH HOH . F 3 HOH D 61 2201 2201 HOH HOH . F 3 HOH D 62 2202 2202 HOH HOH . F 3 HOH D 63 2225 2225 HOH HOH . F 3 HOH D 64 2232 2232 HOH HOH . F 3 HOH D 65 2239 2239 HOH HOH . F 3 HOH D 66 2240 2240 HOH HOH . F 3 HOH D 67 2258 2258 HOH HOH . F 3 HOH D 68 2297 2297 HOH HOH . F 3 HOH D 69 2300 2300 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . D 2 22.273 3.25 16.88 1 18.39 ? C11 BTN 300 D 1 HETATM 2 O O11 BTN . . . D 2 21.601 2.294 17.234 1 20.62 ? O11 BTN 300 D 1 HETATM 3 O O12 BTN . . . D 2 23.445 3.177 16.556 1 18.88 ? O12 BTN 300 D 1 HETATM 4 C C10 BTN . . . D 2 21.569 4.621 16.883 1 16.73 ? C10 BTN 300 D 1 HETATM 5 C C9 BTN . . . D 2 20.199 4.573 16.221 1 13.05 ? C9 BTN 300 D 1 HETATM 6 C C8 BTN . . . D 2 20.276 4.187 14.75 1 12.51 ? C8 BTN 300 D 1 HETATM 7 C C7 BTN . . . D 2 18.857 4.267 14.163 1 15.11 ? C7 BTN 300 D 1 HETATM 8 C C2 BTN . . . D 2 18.894 3.993 12.643 1 14.65 ? C2 BTN 300 D 1 HETATM 9 S S1 BTN . . . D 2 19.679 5.166 11.534 1 12.56 ? S1 BTN 300 D 1 HETATM 10 C C6 BTN . . . D 2 18.942 4.386 10.11 1 14.96 ? C6 BTN 300 D 1 HETATM 11 C C5 BTN . . . D 2 17.574 3.787 10.511 1 14.27 ? C5 BTN 300 D 1 HETATM 12 N N1 BTN . . . D 2 16.528 4.774 10.272 1 15.41 ? N1 BTN 300 D 1 HETATM 13 C C3 BTN . . . D 2 15.953 5.191 11.415 1 14.87 ? C3 BTN 300 D 1 HETATM 14 O O3 BTN . . . D 2 15.01 6.001 11.502 1 17.32 ? O3 BTN 300 D 1 HETATM 15 N N2 BTN . . . D 2 16.526 4.621 12.477 1 16.59 ? N2 BTN 300 D 1 HETATM 16 C C4 BTN . . . D 2 17.527 3.639 12.09 1 13.9 ? C4 BTN 300 D 1 HETATM 17 H H101 BTN . . . D 2 21.46 4.942 17.911 1 15.13 ? H101 BTN 300 D 1 HETATM 18 H H102 BTN . . . D 2 22.191 5.333 16.373 1 16.45 ? H102 BTN 300 D 1 HETATM 19 H H91 BTN . . . D 2 19.573 3.886 16.76 1 14.7 ? H91 BTN 300 D 1 HETATM 20 H H92 BTN . . . D 2 19.744 5.549 16.309 1 14.59 ? H92 BTN 300 D 1 HETATM 21 H H81 BTN . . . D 2 20.931 4.86 14.213 1 13.22 ? H81 BTN 300 D 1 HETATM 22 H H82 BTN . . . D 2 20.669 3.185 14.652 1 12.95 ? H82 BTN 300 D 1 HETATM 23 H H71 BTN . . . D 2 18.21 3.557 14.656 1 15.02 ? H71 BTN 300 D 1 HETATM 24 H H72 BTN . . . D 2 18.459 5.257 14.333 1 15.71 ? H72 BTN 300 D 1 HETATM 25 H H2 BTN . . . D 2 19.466 3.088 12.553 1 16.27 ? H2 BTN 300 D 1 HETATM 26 H H61 BTN . . . D 2 19.613 3.628 9.743 1 15.14 ? H61 BTN 300 D 1 HETATM 27 H H62 BTN . . . D 2 18.817 5.133 9.337 1 16.44 ? H62 BTN 300 D 1 HETATM 28 H H5 BTN . . . D 2 17.358 2.875 9.986 1 15.28 ? H5 BTN 300 D 1 HETATM 29 H HN1 BTN . . . D 2 16.306 5.07 9.375 1 13.49 ? HN1 BTN 300 D 1 HETATM 30 H HN2 BTN . . . D 2 16.305 4.836 13.412 1 14.97 ? HN2 BTN 300 D 1 HETATM 31 H H4 BTN . . . D 2 17.201 2.655 12.402 1 15.54 ? H4 BTN 300 D 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #