data_2RTE # _model_server_result.job_id 3-Feidm0m7fQypxs9IimnA _model_server_result.datetime_utc '2024-11-23 18:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2RTE # _exptl.entry_id 2RTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTE _cell.length_a 95.15 _cell.length_b 106.24 _cell.length_c 49.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 2RTE _atom_sites.fract_transf_matrix[1][1] 0.01051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTN B 1 300 300 BTN BTN . D 3 SO4 D 1 300 300 SO4 SO4 . E 2 BTN D 1 301 300 BTN BTN . F 4 HOH B 1 506 506 HOH HOH . F 4 HOH B 2 534 534 HOH HOH . F 4 HOH B 3 549 549 HOH HOH . F 4 HOH B 4 551 551 HOH HOH . F 4 HOH B 5 552 552 HOH HOH . F 4 HOH B 6 605 605 HOH HOH . F 4 HOH B 7 606 606 HOH HOH . F 4 HOH B 8 607 607 HOH HOH . F 4 HOH B 9 609 609 HOH HOH . F 4 HOH B 10 613 613 HOH HOH . F 4 HOH B 11 617 617 HOH HOH . F 4 HOH B 12 619 619 HOH HOH . F 4 HOH B 13 620 620 HOH HOH . F 4 HOH B 14 621 621 HOH HOH . F 4 HOH B 15 628 628 HOH HOH . F 4 HOH B 16 629 629 HOH HOH . F 4 HOH B 17 637 637 HOH HOH . F 4 HOH B 18 639 639 HOH HOH . F 4 HOH B 19 643 643 HOH HOH . F 4 HOH B 20 646 646 HOH HOH . F 4 HOH B 21 649 649 HOH HOH . F 4 HOH B 22 653 653 HOH HOH . F 4 HOH B 23 660 660 HOH HOH . F 4 HOH B 24 662 662 HOH HOH . F 4 HOH B 25 664 664 HOH HOH . F 4 HOH B 26 669 669 HOH HOH . F 4 HOH B 27 671 671 HOH HOH . F 4 HOH B 28 680 680 HOH HOH . F 4 HOH B 29 683 683 HOH HOH . F 4 HOH B 30 727 727 HOH HOH . F 4 HOH B 31 988 988 HOH HOH . F 4 HOH B 32 996 996 HOH HOH . F 4 HOH B 33 1015 1015 HOH HOH . F 4 HOH B 34 1077 1077 HOH HOH . F 4 HOH B 35 1078 1078 HOH HOH . F 4 HOH B 36 1082 1082 HOH HOH . F 4 HOH B 37 1235 1235 HOH HOH . F 4 HOH B 38 1255 1255 HOH HOH . F 4 HOH B 39 1311 1311 HOH HOH . F 4 HOH B 40 1415 1415 HOH HOH . F 4 HOH B 41 1462 1462 HOH HOH . F 4 HOH B 42 1471 1471 HOH HOH . F 4 HOH B 43 1506 1506 HOH HOH . F 4 HOH B 44 1529 1529 HOH HOH . F 4 HOH B 45 1573 1573 HOH HOH . F 4 HOH B 46 1575 1575 HOH HOH . F 4 HOH B 47 1585 1585 HOH HOH . F 4 HOH B 48 1605 1605 HOH HOH . F 4 HOH B 49 1637 1637 HOH HOH . F 4 HOH B 50 1654 1654 HOH HOH . F 4 HOH B 51 1660 1660 HOH HOH . F 4 HOH B 52 1671 1671 HOH HOH . F 4 HOH B 53 1689 1689 HOH HOH . F 4 HOH B 54 1695 1695 HOH HOH . F 4 HOH B 55 1719 1719 HOH HOH . F 4 HOH B 56 1768 1768 HOH HOH . F 4 HOH B 57 1777 1777 HOH HOH . F 4 HOH B 58 1811 1811 HOH HOH . F 4 HOH B 59 1825 1825 HOH HOH . F 4 HOH B 60 1847 1847 HOH HOH . F 4 HOH B 61 1869 1869 HOH HOH . F 4 HOH B 62 1903 1903 HOH HOH . F 4 HOH B 63 2059 2059 HOH HOH . F 4 HOH B 64 2073 2073 HOH HOH . F 4 HOH B 65 2150 2150 HOH HOH . F 4 HOH B 66 2151 2151 HOH HOH . F 4 HOH B 67 2181 2181 HOH HOH . F 4 HOH B 68 2189 2189 HOH HOH . F 4 HOH B 69 2190 2190 HOH HOH . F 4 HOH B 70 2191 2191 HOH HOH . F 4 HOH B 71 2259 2259 HOH HOH . F 4 HOH B 72 2276 2276 HOH HOH . F 4 HOH B 73 2277 2277 HOH HOH . F 4 HOH B 74 2284 2284 HOH HOH . F 4 HOH B 75 2300 2300 HOH HOH . G 4 HOH D 1 490 490 HOH HOH . G 4 HOH D 2 491 491 HOH HOH . G 4 HOH D 3 492 492 HOH HOH . G 4 HOH D 4 502 502 HOH HOH . G 4 HOH D 5 503 503 HOH HOH . G 4 HOH D 6 515 515 HOH HOH . G 4 HOH D 7 524 524 HOH HOH . G 4 HOH D 8 527 527 HOH HOH . G 4 HOH D 9 529 529 HOH HOH . G 4 HOH D 10 568 568 HOH HOH . G 4 HOH D 11 589 589 HOH HOH . G 4 HOH D 12 593 593 HOH HOH . G 4 HOH D 13 597 597 HOH HOH . G 4 HOH D 14 602 602 HOH HOH . G 4 HOH D 15 603 603 HOH HOH . G 4 HOH D 16 612 612 HOH HOH . G 4 HOH D 17 616 616 HOH HOH . G 4 HOH D 18 622 622 HOH HOH . G 4 HOH D 19 624 624 HOH HOH . G 4 HOH D 20 625 625 HOH HOH . G 4 HOH D 21 626 626 HOH HOH . G 4 HOH D 22 627 627 HOH HOH . G 4 HOH D 23 633 633 HOH HOH . G 4 HOH D 24 635 635 HOH HOH . G 4 HOH D 25 636 636 HOH HOH . G 4 HOH D 26 641 641 HOH HOH . G 4 HOH D 27 642 642 HOH HOH . G 4 HOH D 28 655 655 HOH HOH . G 4 HOH D 29 656 656 HOH HOH . G 4 HOH D 30 663 663 HOH HOH . G 4 HOH D 31 666 666 HOH HOH . G 4 HOH D 32 668 668 HOH HOH . G 4 HOH D 33 688 688 HOH HOH . G 4 HOH D 34 689 689 HOH HOH . G 4 HOH D 35 690 690 HOH HOH . G 4 HOH D 36 697 697 HOH HOH . G 4 HOH D 37 698 698 HOH HOH . G 4 HOH D 38 742 742 HOH HOH . G 4 HOH D 39 764 764 HOH HOH . G 4 HOH D 40 802 802 HOH HOH . G 4 HOH D 41 830 830 HOH HOH . G 4 HOH D 42 926 926 HOH HOH . G 4 HOH D 43 931 931 HOH HOH . G 4 HOH D 44 933 933 HOH HOH . G 4 HOH D 45 951 951 HOH HOH . G 4 HOH D 46 952 952 HOH HOH . G 4 HOH D 47 966 966 HOH HOH . G 4 HOH D 48 968 968 HOH HOH . G 4 HOH D 49 1071 1071 HOH HOH . G 4 HOH D 50 1076 1076 HOH HOH . G 4 HOH D 51 1236 1236 HOH HOH . G 4 HOH D 52 1322 1322 HOH HOH . G 4 HOH D 53 1343 1343 HOH HOH . G 4 HOH D 54 1390 1390 HOH HOH . G 4 HOH D 55 1483 1483 HOH HOH . G 4 HOH D 56 1493 1493 HOH HOH . G 4 HOH D 57 1505 1505 HOH HOH . G 4 HOH D 58 1554 1554 HOH HOH . G 4 HOH D 59 1564 1564 HOH HOH . G 4 HOH D 60 1565 1565 HOH HOH . G 4 HOH D 61 1576 1576 HOH HOH . G 4 HOH D 62 1596 1596 HOH HOH . G 4 HOH D 63 1600 1600 HOH HOH . G 4 HOH D 64 1617 1617 HOH HOH . G 4 HOH D 65 1625 1625 HOH HOH . G 4 HOH D 66 1651 1651 HOH HOH . G 4 HOH D 67 1653 1653 HOH HOH . G 4 HOH D 68 1673 1673 HOH HOH . G 4 HOH D 69 1728 1728 HOH HOH . G 4 HOH D 70 1780 1780 HOH HOH . G 4 HOH D 71 1782 1782 HOH HOH . G 4 HOH D 72 1786 1786 HOH HOH . G 4 HOH D 73 1800 1800 HOH HOH . G 4 HOH D 74 1809 1809 HOH HOH . G 4 HOH D 75 1943 1943 HOH HOH . G 4 HOH D 76 1965 1965 HOH HOH . G 4 HOH D 77 1998 1998 HOH HOH . G 4 HOH D 78 2024 2024 HOH HOH . G 4 HOH D 79 2075 2075 HOH HOH . G 4 HOH D 80 2144 2144 HOH HOH . G 4 HOH D 81 2163 2163 HOH HOH . G 4 HOH D 82 2177 2177 HOH HOH . G 4 HOH D 83 2202 2202 HOH HOH . G 4 HOH D 84 2205 2205 HOH HOH . G 4 HOH D 85 2207 2207 HOH HOH . G 4 HOH D 86 2209 2209 HOH HOH . G 4 HOH D 87 2211 2211 HOH HOH . G 4 HOH D 88 2212 2212 HOH HOH . G 4 HOH D 89 2213 2213 HOH HOH . G 4 HOH D 90 2215 2215 HOH HOH . G 4 HOH D 91 2217 2217 HOH HOH . G 4 HOH D 92 2218 2218 HOH HOH . G 4 HOH D 93 2219 2219 HOH HOH . G 4 HOH D 94 2220 2220 HOH HOH . G 4 HOH D 95 2221 2221 HOH HOH . G 4 HOH D 96 2226 2226 HOH HOH . G 4 HOH D 97 2228 2228 HOH HOH . G 4 HOH D 98 2235 2235 HOH HOH . G 4 HOH D 99 2237 2237 HOH HOH . G 4 HOH D 100 2248 2248 HOH HOH . G 4 HOH D 101 2249 2249 HOH HOH . G 4 HOH D 102 2251 2251 HOH HOH . G 4 HOH D 103 2262 2262 HOH HOH . G 4 HOH D 104 2263 2263 HOH HOH . G 4 HOH D 105 2264 2264 HOH HOH . G 4 HOH D 106 2266 2266 HOH HOH . G 4 HOH D 107 2269 2269 HOH HOH . G 4 HOH D 108 2310 2310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . C 2 29.292 14.52 -9.602 1 23.01 ? C11 BTN 300 B 1 HETATM 2 O O11 BTN . . . C 2 29.996 14.121 -10.526 1 23.35 ? O11 BTN 300 B 1 HETATM 3 O O12 BTN . . . C 2 28.105 14.254 -9.45 1 25.75 ? O12 BTN 300 B 1 HETATM 4 C C10 BTN . . . C 2 29.939 15.437 -8.556 1 19.98 ? C10 BTN 300 B 1 HETATM 5 C C9 BTN . . . C 2 31.366 15.001 -8.209 1 20.82 ? C9 BTN 300 B 1 HETATM 6 C C8 BTN . . . C 2 31.339 13.697 -7.425 1 19.06 ? C8 BTN 300 B 1 HETATM 7 C C7 BTN . . . C 2 32.775 13.375 -6.953 1 20.18 ? C7 BTN 300 B 1 HETATM 8 C C2 BTN . . . C 2 32.756 12.02 -6.15 1 19.59 ? C2 BTN 300 B 1 HETATM 9 S S1 BTN . . . C 2 32.088 12.073 -4.496 1 18.57 ? S1 BTN 300 B 1 HETATM 10 C C6 BTN . . . C 2 32.83 10.45 -4.182 1 17.31 ? C6 BTN 300 B 1 HETATM 11 C C5 BTN . . . C 2 34.169 10.302 -4.943 1 16.47 ? C5 BTN 300 B 1 HETATM 12 N N1 BTN . . . C 2 35.183 10.855 -4.082 1 18.08 ? N1 BTN 300 B 1 HETATM 13 C C3 BTN . . . C 2 35.746 11.961 -4.595 1 15.49 ? C3 BTN 300 B 1 HETATM 14 O O3 BTN . . . C 2 36.637 12.61 -4.018 1 16.23 ? O3 BTN 300 B 1 HETATM 15 N N2 BTN . . . C 2 35.218 12.255 -5.787 1 17.04 ? N2 BTN 300 B 1 HETATM 16 C C4 BTN . . . C 2 34.175 11.307 -6.162 1 18.18 ? C4 BTN 300 B 1 HETATM 17 H H101 BTN . . . C 2 29.954 16.447 -8.941 1 21.36 ? H101 BTN 300 B 1 HETATM 18 H H102 BTN . . . C 2 29.338 15.418 -7.662 1 19.29 ? H102 BTN 300 B 1 HETATM 19 H H91 BTN . . . C 2 31.944 14.87 -9.112 1 17 ? H91 BTN 300 B 1 HETATM 20 H H92 BTN . . . C 2 31.838 15.77 -7.614 1 18.54 ? H92 BTN 300 B 1 HETATM 21 H H81 BTN . . . C 2 30.675 13.784 -6.576 1 19.47 ? H81 BTN 300 B 1 HETATM 22 H H82 BTN . . . C 2 30.987 12.911 -8.072 1 19.46 ? H82 BTN 300 B 1 HETATM 23 H H71 BTN . . . C 2 33.427 13.29 -7.812 1 19.92 ? H71 BTN 300 B 1 HETATM 24 H H72 BTN . . . C 2 33.14 14.172 -6.317 1 19.07 ? H72 BTN 300 B 1 HETATM 25 H H2 BTN . . . C 2 32.108 11.356 -6.701 1 19.61 ? H2 BTN 300 B 1 HETATM 26 H H61 BTN . . . C 2 32.132 9.693 -4.507 1 16.21 ? H61 BTN 300 B 1 HETATM 27 H H62 BTN . . . C 2 32.982 10.34 -3.116 1 17.19 ? H62 BTN 300 B 1 HETATM 28 H H5 BTN . . . C 2 34.423 9.294 -5.225 1 18.83 ? H5 BTN 300 B 1 HETATM 29 H HN1 BTN . . . C 2 35.401 10.44 -3.228 1 15.6 ? HN1 BTN 300 B 1 HETATM 30 H HN2 BTN . . . C 2 35.481 13.016 -6.36 1 15.98 ? HN2 BTN 300 B 1 HETATM 31 H H4 BTN . . . C 2 34.41 10.817 -7.097 1 17.18 ? H4 BTN 300 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #