data_2RTF # _model_server_result.job_id e0K7MqhbpISIJfk7V4hCmA _model_server_result.datetime_utc '2024-11-13 14:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2RTF # _exptl.entry_id 2RTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTF _cell.length_a 95.13 _cell.length_b 105.02 _cell.length_c 49.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 2RTF _atom_sites.fract_transf_matrix[1][1] 0.010512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTN B 1 300 300 BTN BTN . D 3 SO4 D 1 300 300 SO4 SO4 . E 2 BTN D 1 301 300 BTN BTN . F 4 HOH B 1 506 506 HOH HOH . F 4 HOH B 2 534 534 HOH HOH . F 4 HOH B 3 535 535 HOH HOH . F 4 HOH B 4 551 551 HOH HOH . F 4 HOH B 5 552 552 HOH HOH . F 4 HOH B 6 605 605 HOH HOH . F 4 HOH B 7 606 606 HOH HOH . F 4 HOH B 8 607 607 HOH HOH . F 4 HOH B 9 609 609 HOH HOH . F 4 HOH B 10 613 613 HOH HOH . F 4 HOH B 11 617 617 HOH HOH . F 4 HOH B 12 619 619 HOH HOH . F 4 HOH B 13 620 620 HOH HOH . F 4 HOH B 14 621 621 HOH HOH . F 4 HOH B 15 628 628 HOH HOH . F 4 HOH B 16 637 637 HOH HOH . F 4 HOH B 17 639 639 HOH HOH . F 4 HOH B 18 643 643 HOH HOH . F 4 HOH B 19 646 646 HOH HOH . F 4 HOH B 20 649 649 HOH HOH . F 4 HOH B 21 653 653 HOH HOH . F 4 HOH B 22 660 660 HOH HOH . F 4 HOH B 23 662 662 HOH HOH . F 4 HOH B 24 664 664 HOH HOH . F 4 HOH B 25 669 669 HOH HOH . F 4 HOH B 26 672 672 HOH HOH . F 4 HOH B 27 683 683 HOH HOH . F 4 HOH B 28 727 727 HOH HOH . F 4 HOH B 29 742 742 HOH HOH . F 4 HOH B 30 988 988 HOH HOH . F 4 HOH B 31 996 996 HOH HOH . F 4 HOH B 32 1000 1000 HOH HOH . F 4 HOH B 33 1015 1015 HOH HOH . F 4 HOH B 34 1077 1077 HOH HOH . F 4 HOH B 35 1078 1078 HOH HOH . F 4 HOH B 36 1082 1082 HOH HOH . F 4 HOH B 37 1104 1104 HOH HOH . F 4 HOH B 38 1235 1235 HOH HOH . F 4 HOH B 39 1255 1255 HOH HOH . F 4 HOH B 40 1311 1311 HOH HOH . F 4 HOH B 41 1415 1415 HOH HOH . F 4 HOH B 42 1462 1462 HOH HOH . F 4 HOH B 43 1471 1471 HOH HOH . F 4 HOH B 44 1474 1474 HOH HOH . F 4 HOH B 45 1506 1506 HOH HOH . F 4 HOH B 46 1529 1529 HOH HOH . F 4 HOH B 47 1573 1573 HOH HOH . F 4 HOH B 48 1575 1575 HOH HOH . F 4 HOH B 49 1585 1585 HOH HOH . F 4 HOH B 50 1605 1605 HOH HOH . F 4 HOH B 51 1637 1637 HOH HOH . F 4 HOH B 52 1654 1654 HOH HOH . F 4 HOH B 53 1658 1658 HOH HOH . F 4 HOH B 54 1660 1660 HOH HOH . F 4 HOH B 55 1671 1671 HOH HOH . F 4 HOH B 56 1689 1689 HOH HOH . F 4 HOH B 57 1695 1695 HOH HOH . F 4 HOH B 58 1719 1719 HOH HOH . F 4 HOH B 59 1749 1749 HOH HOH . F 4 HOH B 60 1768 1768 HOH HOH . F 4 HOH B 61 1777 1777 HOH HOH . F 4 HOH B 62 1800 1800 HOH HOH . F 4 HOH B 63 1811 1811 HOH HOH . F 4 HOH B 64 1825 1825 HOH HOH . F 4 HOH B 65 1847 1847 HOH HOH . F 4 HOH B 66 1869 1869 HOH HOH . F 4 HOH B 67 1903 1903 HOH HOH . F 4 HOH B 68 2059 2059 HOH HOH . F 4 HOH B 69 2073 2073 HOH HOH . F 4 HOH B 70 2147 2147 HOH HOH . F 4 HOH B 71 2150 2150 HOH HOH . F 4 HOH B 72 2151 2151 HOH HOH . F 4 HOH B 73 2188 2188 HOH HOH . F 4 HOH B 74 2189 2189 HOH HOH . F 4 HOH B 75 2190 2190 HOH HOH . F 4 HOH B 76 2191 2191 HOH HOH . G 4 HOH D 1 492 492 HOH HOH . G 4 HOH D 2 503 503 HOH HOH . G 4 HOH D 3 515 515 HOH HOH . G 4 HOH D 4 524 524 HOH HOH . G 4 HOH D 5 527 527 HOH HOH . G 4 HOH D 6 529 529 HOH HOH . G 4 HOH D 7 568 568 HOH HOH . G 4 HOH D 8 589 589 HOH HOH . G 4 HOH D 9 593 593 HOH HOH . G 4 HOH D 10 597 597 HOH HOH . G 4 HOH D 11 602 602 HOH HOH . G 4 HOH D 12 603 603 HOH HOH . G 4 HOH D 13 612 612 HOH HOH . G 4 HOH D 14 616 616 HOH HOH . G 4 HOH D 15 622 622 HOH HOH . G 4 HOH D 16 624 624 HOH HOH . G 4 HOH D 17 625 625 HOH HOH . G 4 HOH D 18 626 626 HOH HOH . G 4 HOH D 19 627 627 HOH HOH . G 4 HOH D 20 629 629 HOH HOH . G 4 HOH D 21 633 633 HOH HOH . G 4 HOH D 22 635 635 HOH HOH . G 4 HOH D 23 636 636 HOH HOH . G 4 HOH D 24 641 641 HOH HOH . G 4 HOH D 25 642 642 HOH HOH . G 4 HOH D 26 655 655 HOH HOH . G 4 HOH D 27 656 656 HOH HOH . G 4 HOH D 28 663 663 HOH HOH . G 4 HOH D 29 666 666 HOH HOH . G 4 HOH D 30 668 668 HOH HOH . G 4 HOH D 31 671 671 HOH HOH . G 4 HOH D 32 680 680 HOH HOH . G 4 HOH D 33 688 688 HOH HOH . G 4 HOH D 34 689 689 HOH HOH . G 4 HOH D 35 697 697 HOH HOH . G 4 HOH D 36 698 698 HOH HOH . G 4 HOH D 37 764 764 HOH HOH . G 4 HOH D 38 802 802 HOH HOH . G 4 HOH D 39 830 830 HOH HOH . G 4 HOH D 40 926 926 HOH HOH . G 4 HOH D 41 931 931 HOH HOH . G 4 HOH D 42 933 933 HOH HOH . G 4 HOH D 43 951 951 HOH HOH . G 4 HOH D 44 952 952 HOH HOH . G 4 HOH D 45 966 966 HOH HOH . G 4 HOH D 46 968 968 HOH HOH . G 4 HOH D 47 1071 1071 HOH HOH . G 4 HOH D 48 1076 1076 HOH HOH . G 4 HOH D 49 1236 1236 HOH HOH . G 4 HOH D 50 1322 1322 HOH HOH . G 4 HOH D 51 1343 1343 HOH HOH . G 4 HOH D 52 1390 1390 HOH HOH . G 4 HOH D 53 1483 1483 HOH HOH . G 4 HOH D 54 1493 1493 HOH HOH . G 4 HOH D 55 1505 1505 HOH HOH . G 4 HOH D 56 1554 1554 HOH HOH . G 4 HOH D 57 1564 1564 HOH HOH . G 4 HOH D 58 1565 1565 HOH HOH . G 4 HOH D 59 1576 1576 HOH HOH . G 4 HOH D 60 1596 1596 HOH HOH . G 4 HOH D 61 1600 1600 HOH HOH . G 4 HOH D 62 1617 1617 HOH HOH . G 4 HOH D 63 1625 1625 HOH HOH . G 4 HOH D 64 1651 1651 HOH HOH . G 4 HOH D 65 1653 1653 HOH HOH . G 4 HOH D 66 1722 1722 HOH HOH . G 4 HOH D 67 1728 1728 HOH HOH . G 4 HOH D 68 1780 1780 HOH HOH . G 4 HOH D 69 1782 1782 HOH HOH . G 4 HOH D 70 1783 1783 HOH HOH . G 4 HOH D 71 1786 1786 HOH HOH . G 4 HOH D 72 1809 1809 HOH HOH . G 4 HOH D 73 1845 1845 HOH HOH . G 4 HOH D 74 1929 1929 HOH HOH . G 4 HOH D 75 1943 1943 HOH HOH . G 4 HOH D 76 1965 1965 HOH HOH . G 4 HOH D 77 1998 1998 HOH HOH . G 4 HOH D 78 2024 2024 HOH HOH . G 4 HOH D 79 2075 2075 HOH HOH . G 4 HOH D 80 2112 2112 HOH HOH . G 4 HOH D 81 2144 2144 HOH HOH . G 4 HOH D 82 2177 2177 HOH HOH . G 4 HOH D 83 2202 2202 HOH HOH . G 4 HOH D 84 2207 2207 HOH HOH . G 4 HOH D 85 2208 2208 HOH HOH . G 4 HOH D 86 2210 2210 HOH HOH . G 4 HOH D 87 2211 2211 HOH HOH . G 4 HOH D 88 2212 2212 HOH HOH . G 4 HOH D 89 2215 2215 HOH HOH . G 4 HOH D 90 2217 2217 HOH HOH . G 4 HOH D 91 2218 2218 HOH HOH . G 4 HOH D 92 2219 2219 HOH HOH . G 4 HOH D 93 2220 2220 HOH HOH . G 4 HOH D 94 2221 2221 HOH HOH . G 4 HOH D 95 2222 2222 HOH HOH . G 4 HOH D 96 2223 2223 HOH HOH . G 4 HOH D 97 2224 2224 HOH HOH . G 4 HOH D 98 2225 2225 HOH HOH . G 4 HOH D 99 2226 2226 HOH HOH . G 4 HOH D 100 2235 2235 HOH HOH . G 4 HOH D 101 2237 2237 HOH HOH . G 4 HOH D 102 2249 2249 HOH HOH . G 4 HOH D 103 2251 2251 HOH HOH . G 4 HOH D 104 2259 2259 HOH HOH . G 4 HOH D 105 2262 2262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . C 2 29.281 14.397 -9.595 1 26.25 ? C11 BTN 300 B 1 HETATM 2 O O11 BTN . . . C 2 29.988 13.982 -10.507 1 25.61 ? O11 BTN 300 B 1 HETATM 3 O O12 BTN . . . C 2 28.093 14.181 -9.501 1 27.72 ? O12 BTN 300 B 1 HETATM 4 C C10 BTN . . . C 2 29.917 15.258 -8.505 1 24.39 ? C10 BTN 300 B 1 HETATM 5 C C9 BTN . . . C 2 31.355 14.812 -8.181 1 27.08 ? C9 BTN 300 B 1 HETATM 6 C C8 BTN . . . C 2 31.384 13.442 -7.5 1 22.54 ? C8 BTN 300 B 1 HETATM 7 C C7 BTN . . . C 2 32.833 13.106 -7.011 1 23.26 ? C7 BTN 300 B 1 HETATM 8 C C2 BTN . . . C 2 32.807 11.777 -6.169 1 19.5 ? C2 BTN 300 B 1 HETATM 9 S S1 BTN . . . C 2 32.039 11.893 -4.569 1 28.84 ? S1 BTN 300 B 1 HETATM 10 C C6 BTN . . . C 2 32.812 10.375 -4.038 1 18.88 ? C6 BTN 300 B 1 HETATM 11 C C5 BTN . . . C 2 34.161 10.176 -4.738 1 18.51 ? C5 BTN 300 B 1 HETATM 12 N N1 BTN . . . C 2 35.133 10.779 -3.857 1 18.79 ? N1 BTN 300 B 1 HETATM 13 C C3 BTN . . . C 2 35.734 11.828 -4.422 1 19.57 ? C3 BTN 300 B 1 HETATM 14 O O3 BTN . . . C 2 36.614 12.482 -3.858 1 17.52 ? O3 BTN 300 B 1 HETATM 15 N N2 BTN . . . C 2 35.253 12.057 -5.653 1 19.59 ? N2 BTN 300 B 1 HETATM 16 C C4 BTN . . . C 2 34.228 11.085 -6.025 1 20.05 ? C4 BTN 300 B 1 HETATM 17 H H101 BTN . . . C 2 29.912 16.289 -8.833 1 25.45 ? H101 BTN 300 B 1 HETATM 18 H H102 BTN . . . C 2 29.316 15.18 -7.614 1 24.63 ? H102 BTN 300 B 1 HETATM 19 H H91 BTN . . . C 2 31.935 14.779 -9.091 1 24.9 ? H91 BTN 300 B 1 HETATM 20 H H92 BTN . . . C 2 31.794 15.555 -7.53 1 26.16 ? H92 BTN 300 B 1 HETATM 21 H H81 BTN . . . C 2 30.701 13.441 -6.663 1 24.41 ? H81 BTN 300 B 1 HETATM 22 H H82 BTN . . . C 2 31.071 12.69 -8.208 1 24.38 ? H82 BTN 300 B 1 HETATM 23 H H71 BTN . . . C 2 33.488 12.99 -7.863 1 23.31 ? H71 BTN 300 B 1 HETATM 24 H H72 BTN . . . C 2 33.204 13.912 -6.396 1 20.73 ? H72 BTN 300 B 1 HETATM 25 H H2 BTN . . . C 2 32.195 11.083 -6.719 1 21.13 ? H2 BTN 300 B 1 HETATM 26 H H61 BTN . . . C 2 32.142 9.566 -4.274 1 19.94 ? H61 BTN 300 B 1 HETATM 27 H H62 BTN . . . C 2 32.935 10.414 -2.967 1 18.61 ? H62 BTN 300 B 1 HETATM 28 H H5 BTN . . . C 2 34.413 9.146 -4.935 1 19.09 ? H5 BTN 300 B 1 HETATM 29 H HN1 BTN . . . C 2 35.299 10.433 -2.963 1 18.62 ? HN1 BTN 300 B 1 HETATM 30 H HN2 BTN . . . C 2 35.539 12.789 -6.253 1 21.57 ? HN2 BTN 300 B 1 HETATM 31 H H4 BTN . . . C 2 34.531 10.528 -6.904 1 19.93 ? H4 BTN 300 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 31 #