data_2RTH # _model_server_result.job_id kLBFT2Z5LVH8pXjVZU-wXg _model_server_result.datetime_utc '2024-11-13 14:26:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 2RTH # _exptl.entry_id 2RTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTH _cell.length_a 94.7 _cell.length_b 104.77 _cell.length_c 47.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.7 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 94.7 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 2RTH _atom_sites.fract_transf_matrix[1][1] 0.01056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT B 1 501 501 ACT ACT . D 3 GLL B 1 300 300 GLL GLL . E 2 ACT D 1 500 500 ACT ACT . F 3 GLL D 1 300 300 GLL GLL . G 4 HOH B 1 549 549 HOH HOH . G 4 HOH B 2 552 552 HOH HOH . G 4 HOH B 3 605 605 HOH HOH . G 4 HOH B 4 606 606 HOH HOH . G 4 HOH B 5 607 607 HOH HOH . G 4 HOH B 6 609 609 HOH HOH . G 4 HOH B 7 613 613 HOH HOH . G 4 HOH B 8 617 617 HOH HOH . G 4 HOH B 9 619 619 HOH HOH . G 4 HOH B 10 621 621 HOH HOH . G 4 HOH B 11 628 628 HOH HOH . G 4 HOH B 12 629 629 HOH HOH . G 4 HOH B 13 637 637 HOH HOH . G 4 HOH B 14 639 639 HOH HOH . G 4 HOH B 15 643 643 HOH HOH . G 4 HOH B 16 646 646 HOH HOH . G 4 HOH B 17 649 649 HOH HOH . G 4 HOH B 18 653 653 HOH HOH . G 4 HOH B 19 660 660 HOH HOH . G 4 HOH B 20 662 662 HOH HOH . G 4 HOH B 21 664 664 HOH HOH . G 4 HOH B 22 669 669 HOH HOH . G 4 HOH B 23 680 680 HOH HOH . G 4 HOH B 24 683 683 HOH HOH . G 4 HOH B 25 959 959 HOH HOH . G 4 HOH B 26 966 966 HOH HOH . G 4 HOH B 27 988 988 HOH HOH . G 4 HOH B 28 1000 1000 HOH HOH . G 4 HOH B 29 1010 1010 HOH HOH . G 4 HOH B 30 1078 1078 HOH HOH . G 4 HOH B 31 1082 1082 HOH HOH . G 4 HOH B 32 1096 1096 HOH HOH . G 4 HOH B 33 1145 1145 HOH HOH . G 4 HOH B 34 1255 1255 HOH HOH . G 4 HOH B 35 1311 1311 HOH HOH . G 4 HOH B 36 1363 1363 HOH HOH . G 4 HOH B 37 1415 1415 HOH HOH . G 4 HOH B 38 1468 1468 HOH HOH . G 4 HOH B 39 1490 1490 HOH HOH . G 4 HOH B 40 1539 1539 HOH HOH . G 4 HOH B 41 1561 1561 HOH HOH . G 4 HOH B 42 1562 1562 HOH HOH . G 4 HOH B 43 1564 1564 HOH HOH . G 4 HOH B 44 1570 1570 HOH HOH . G 4 HOH B 45 1572 1572 HOH HOH . G 4 HOH B 46 1573 1573 HOH HOH . G 4 HOH B 47 1577 1577 HOH HOH . G 4 HOH B 48 1607 1607 HOH HOH . G 4 HOH B 49 1610 1610 HOH HOH . G 4 HOH B 50 1611 1611 HOH HOH . G 4 HOH B 51 1612 1612 HOH HOH . G 4 HOH B 52 1619 1619 HOH HOH . G 4 HOH B 53 1640 1640 HOH HOH . G 4 HOH B 54 1647 1647 HOH HOH . H 4 HOH D 1 553 553 HOH HOH . H 4 HOH D 2 568 568 HOH HOH . H 4 HOH D 3 589 589 HOH HOH . H 4 HOH D 4 593 593 HOH HOH . H 4 HOH D 5 597 597 HOH HOH . H 4 HOH D 6 602 602 HOH HOH . H 4 HOH D 7 612 612 HOH HOH . H 4 HOH D 8 616 616 HOH HOH . H 4 HOH D 9 622 622 HOH HOH . H 4 HOH D 10 624 624 HOH HOH . H 4 HOH D 11 625 625 HOH HOH . H 4 HOH D 12 626 626 HOH HOH . H 4 HOH D 13 627 627 HOH HOH . H 4 HOH D 14 635 635 HOH HOH . H 4 HOH D 15 636 636 HOH HOH . H 4 HOH D 16 641 641 HOH HOH . H 4 HOH D 17 642 642 HOH HOH . H 4 HOH D 18 655 655 HOH HOH . H 4 HOH D 19 656 656 HOH HOH . H 4 HOH D 20 663 663 HOH HOH . H 4 HOH D 21 666 666 HOH HOH . H 4 HOH D 22 670 670 HOH HOH . H 4 HOH D 23 671 671 HOH HOH . H 4 HOH D 24 677 677 HOH HOH . H 4 HOH D 25 679 679 HOH HOH . H 4 HOH D 26 697 697 HOH HOH . H 4 HOH D 27 698 698 HOH HOH . H 4 HOH D 28 734 734 HOH HOH . H 4 HOH D 29 742 742 HOH HOH . H 4 HOH D 30 802 802 HOH HOH . H 4 HOH D 31 830 830 HOH HOH . H 4 HOH D 32 843 843 HOH HOH . H 4 HOH D 33 926 926 HOH HOH . H 4 HOH D 34 931 931 HOH HOH . H 4 HOH D 35 933 933 HOH HOH . H 4 HOH D 36 951 951 HOH HOH . H 4 HOH D 37 968 968 HOH HOH . H 4 HOH D 38 1071 1071 HOH HOH . H 4 HOH D 39 1076 1076 HOH HOH . H 4 HOH D 40 1090 1090 HOH HOH . H 4 HOH D 41 1241 1241 HOH HOH . H 4 HOH D 42 1322 1322 HOH HOH . H 4 HOH D 43 1390 1390 HOH HOH . H 4 HOH D 44 1487 1487 HOH HOH . H 4 HOH D 45 1488 1488 HOH HOH . H 4 HOH D 46 1489 1489 HOH HOH . H 4 HOH D 47 1508 1508 HOH HOH . H 4 HOH D 48 1529 1529 HOH HOH . H 4 HOH D 49 1598 1598 HOH HOH . H 4 HOH D 50 1599 1599 HOH HOH . H 4 HOH D 51 1649 1649 HOH HOH . H 4 HOH D 52 1656 1656 HOH HOH . H 4 HOH D 53 1672 1672 HOH HOH . H 4 HOH D 54 1675 1675 HOH HOH . H 4 HOH D 55 1676 1676 HOH HOH . H 4 HOH D 56 1679 1679 HOH HOH . H 4 HOH D 57 1682 1682 HOH HOH . H 4 HOH D 58 1683 1683 HOH HOH . H 4 HOH D 59 1688 1688 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . A . E 2 22.516 2.531 16.933 0.56 57.8 ? C ACT 500 D 1 HETATM 2 C C ACT . B . E 2 20.345 4.013 15.896 0.44 52.66 ? C ACT 500 D 1 HETATM 3 O O ACT . A . E 2 22 1.796 17.771 0.56 55.43 ? O ACT 500 D 1 HETATM 4 O O ACT . B . E 2 19.504 4.498 16.624 0.44 49.25 ? O ACT 500 D 1 HETATM 5 O OXT ACT . A . E 2 23.58 2.359 16.354 0.56 55.51 ? OXT ACT 500 D 1 HETATM 6 O OXT ACT . B . E 2 20.151 3.74 14.728 0.44 52.71 ? OXT ACT 500 D 1 HETATM 7 C CH3 ACT . A . E 2 21.71 3.79 16.583 0.56 58.94 ? CH3 ACT 500 D 1 HETATM 8 C CH3 ACT . B . E 2 21.744 3.705 16.488 0.44 54.5 ? CH3 ACT 500 D 1 HETATM 9 H H1 ACT . A . E 2 21.983 4.599 17.243 0.56 58.04 ? H1 ACT 500 D 1 HETATM 10 H H1 ACT . B . E 2 22.456 3.507 15.697 0.44 54.01 ? H1 ACT 500 D 1 HETATM 11 H H2 ACT . A . E 2 20.654 3.575 16.686 0.56 58.22 ? H2 ACT 500 D 1 HETATM 12 H H2 ACT . B . E 2 21.672 2.824 17.111 0.44 54.05 ? H2 ACT 500 D 1 HETATM 13 H H3 ACT . A . E 2 21.911 4.065 15.557 0.56 58.33 ? H3 ACT 500 D 1 HETATM 14 H H3 ACT . B . E 2 22.093 4.537 17.08 0.44 53.89 ? H3 ACT 500 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #