data_2RTI # _model_server_result.job_id 4c9v11c1u-OPJpSJ_FzPgw _model_server_result.datetime_utc '2024-11-13 13:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2RTI # _exptl.entry_id 2RTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCOLURIL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTI _cell.length_a 95.03 _cell.length_b 104.8 _cell.length_c 48.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 95.03 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 95.03 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C4 H6 N4 O2' _chem_comp.formula_weight 142.116 _chem_comp.id GLL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCOLURIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLL doub 74 n n C1 N1 GLL sing 75 n n C1 N2 GLL sing 76 n n N1 C2 GLL sing 77 n n N1 HN1 GLL sing 78 n n N2 C3 GLL sing 79 n n N2 HN2 GLL sing 80 n n C2 C3 GLL sing 81 n n C2 N1' GLL sing 82 n n C2 H2 GLL sing 83 n n C3 N2' GLL sing 84 n n C3 H3 GLL sing 85 n n N1' C1' GLL sing 86 n n N1' HN1' GLL sing 87 n n N2' C1' GLL sing 88 n n N2' HN2' GLL sing 89 n n C1' O1' GLL doub 90 n n # _atom_sites.entry_id 2RTI _atom_sites.fract_transf_matrix[1][1] 0.010523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLL B 1 300 300 GLL GLL . D 3 FMT B 1 1567 1567 FMT FMT . E 3 FMT B 1 1621 1621 FMT FMT . F 2 GLL D 1 300 300 GLL GLL . G 3 FMT D 1 1615 1615 FMT FMT . H 4 HOH B 1 549 549 HOH HOH . H 4 HOH B 2 552 552 HOH HOH . H 4 HOH B 3 605 605 HOH HOH . H 4 HOH B 4 606 606 HOH HOH . H 4 HOH B 5 607 607 HOH HOH . H 4 HOH B 6 609 609 HOH HOH . H 4 HOH B 7 613 613 HOH HOH . H 4 HOH B 8 617 617 HOH HOH . H 4 HOH B 9 619 619 HOH HOH . H 4 HOH B 10 620 620 HOH HOH . H 4 HOH B 11 621 621 HOH HOH . H 4 HOH B 12 628 628 HOH HOH . H 4 HOH B 13 629 629 HOH HOH . H 4 HOH B 14 637 637 HOH HOH . H 4 HOH B 15 639 639 HOH HOH . H 4 HOH B 16 643 643 HOH HOH . H 4 HOH B 17 646 646 HOH HOH . H 4 HOH B 18 649 649 HOH HOH . H 4 HOH B 19 653 653 HOH HOH . H 4 HOH B 20 660 660 HOH HOH . H 4 HOH B 21 662 662 HOH HOH . H 4 HOH B 22 664 664 HOH HOH . H 4 HOH B 23 669 669 HOH HOH . H 4 HOH B 24 680 680 HOH HOH . H 4 HOH B 25 959 959 HOH HOH . H 4 HOH B 26 966 966 HOH HOH . H 4 HOH B 27 988 988 HOH HOH . H 4 HOH B 28 1000 1000 HOH HOH . H 4 HOH B 29 1010 1010 HOH HOH . H 4 HOH B 30 1078 1078 HOH HOH . H 4 HOH B 31 1082 1082 HOH HOH . H 4 HOH B 32 1116 1116 HOH HOH . H 4 HOH B 33 1145 1145 HOH HOH . H 4 HOH B 34 1255 1255 HOH HOH . H 4 HOH B 35 1311 1311 HOH HOH . H 4 HOH B 36 1363 1363 HOH HOH . H 4 HOH B 37 1415 1415 HOH HOH . H 4 HOH B 38 1468 1468 HOH HOH . H 4 HOH B 39 1490 1490 HOH HOH . H 4 HOH B 40 1520 1520 HOH HOH . H 4 HOH B 41 1539 1539 HOH HOH . H 4 HOH B 42 1560 1560 HOH HOH . H 4 HOH B 43 1561 1561 HOH HOH . H 4 HOH B 44 1562 1562 HOH HOH . H 4 HOH B 45 1564 1564 HOH HOH . H 4 HOH B 46 1568 1568 HOH HOH . H 4 HOH B 47 1570 1570 HOH HOH . H 4 HOH B 48 1572 1572 HOH HOH . H 4 HOH B 49 1573 1573 HOH HOH . H 4 HOH B 50 1577 1577 HOH HOH . H 4 HOH B 51 1579 1579 HOH HOH . H 4 HOH B 52 1607 1607 HOH HOH . H 4 HOH B 53 1610 1610 HOH HOH . H 4 HOH B 54 1611 1611 HOH HOH . H 4 HOH B 55 1612 1612 HOH HOH . H 4 HOH B 56 1614 1614 HOH HOH . H 4 HOH B 57 1619 1619 HOH HOH . H 4 HOH B 58 1628 1628 HOH HOH . I 4 HOH D 1 553 553 HOH HOH . I 4 HOH D 2 568 568 HOH HOH . I 4 HOH D 3 589 589 HOH HOH . I 4 HOH D 4 593 593 HOH HOH . I 4 HOH D 5 597 597 HOH HOH . I 4 HOH D 6 602 602 HOH HOH . I 4 HOH D 7 612 612 HOH HOH . I 4 HOH D 8 616 616 HOH HOH . I 4 HOH D 9 622 622 HOH HOH . I 4 HOH D 10 624 624 HOH HOH . I 4 HOH D 11 625 625 HOH HOH . I 4 HOH D 12 626 626 HOH HOH . I 4 HOH D 13 627 627 HOH HOH . I 4 HOH D 14 635 635 HOH HOH . I 4 HOH D 15 636 636 HOH HOH . I 4 HOH D 16 641 641 HOH HOH . I 4 HOH D 17 642 642 HOH HOH . I 4 HOH D 18 655 655 HOH HOH . I 4 HOH D 19 656 656 HOH HOH . I 4 HOH D 20 663 663 HOH HOH . I 4 HOH D 21 666 666 HOH HOH . I 4 HOH D 22 670 670 HOH HOH . I 4 HOH D 23 671 671 HOH HOH . I 4 HOH D 24 677 677 HOH HOH . I 4 HOH D 25 679 679 HOH HOH . I 4 HOH D 26 683 683 HOH HOH . I 4 HOH D 27 697 697 HOH HOH . I 4 HOH D 28 698 698 HOH HOH . I 4 HOH D 29 734 734 HOH HOH . I 4 HOH D 30 742 742 HOH HOH . I 4 HOH D 31 802 802 HOH HOH . I 4 HOH D 32 830 830 HOH HOH . I 4 HOH D 33 843 843 HOH HOH . I 4 HOH D 34 931 931 HOH HOH . I 4 HOH D 35 933 933 HOH HOH . I 4 HOH D 36 951 951 HOH HOH . I 4 HOH D 37 952 952 HOH HOH . I 4 HOH D 38 968 968 HOH HOH . I 4 HOH D 39 1071 1071 HOH HOH . I 4 HOH D 40 1076 1076 HOH HOH . I 4 HOH D 41 1090 1090 HOH HOH . I 4 HOH D 42 1151 1151 HOH HOH . I 4 HOH D 43 1182 1182 HOH HOH . I 4 HOH D 44 1236 1236 HOH HOH . I 4 HOH D 45 1241 1241 HOH HOH . I 4 HOH D 46 1322 1322 HOH HOH . I 4 HOH D 47 1390 1390 HOH HOH . I 4 HOH D 48 1487 1487 HOH HOH . I 4 HOH D 49 1488 1488 HOH HOH . I 4 HOH D 50 1489 1489 HOH HOH . I 4 HOH D 51 1508 1508 HOH HOH . I 4 HOH D 52 1529 1529 HOH HOH . I 4 HOH D 53 1559 1559 HOH HOH . I 4 HOH D 54 1583 1583 HOH HOH . I 4 HOH D 55 1584 1584 HOH HOH . I 4 HOH D 56 1587 1587 HOH HOH . I 4 HOH D 57 1588 1588 HOH HOH . I 4 HOH D 58 1590 1590 HOH HOH . I 4 HOH D 59 1593 1593 HOH HOH . I 4 HOH D 60 1594 1594 HOH HOH . I 4 HOH D 61 1598 1598 HOH HOH . I 4 HOH D 62 1599 1599 HOH HOH . I 4 HOH D 63 1601 1601 HOH HOH . I 4 HOH D 64 1620 1620 HOH HOH . I 4 HOH D 65 1624 1624 HOH HOH . I 4 HOH D 66 1625 1625 HOH HOH . I 4 HOH D 67 1626 1626 HOH HOH . I 4 HOH D 68 1627 1627 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLL . . . C 2 35.815 11.716 -4.377 1 18.16 ? C1 GLL 300 B 1 HETATM 2 O O1 GLL . . . C 2 36.726 12.261 -3.788 1 17.91 ? O1 GLL 300 B 1 HETATM 3 N N1 GLL . . . C 2 35.265 12.064 -5.499 1 19.99 ? N1 GLL 300 B 1 HETATM 4 N N2 GLL . . . C 2 35.246 10.645 -3.928 1 19.07 ? N2 GLL 300 B 1 HETATM 5 C C2 GLL . . . C 2 34.159 11.152 -5.921 1 17.24 ? C2 GLL 300 B 1 HETATM 6 C C3 GLL . . . C 2 34.145 10.134 -4.798 1 16.45 ? C3 GLL 300 B 1 HETATM 7 N N1' GLL . . . C 2 32.743 11.643 -5.845 1 20.99 ? N1' GLL 300 B 1 HETATM 8 N N2' GLL . . . C 2 32.741 10.223 -4.266 1 17.94 ? N2' GLL 300 B 1 HETATM 9 C C1' GLL . . . C 2 32.024 11.092 -4.92 1 21.82 ? C1' GLL 300 B 1 HETATM 10 O O1' GLL . . . C 2 30.865 11.344 -4.707 1 22.51 ? O1' GLL 300 B 1 HETATM 11 H HN1 GLL . . . C 2 35.558 12.862 -6.024 1 20.27 ? HN1 GLL 300 B 1 HETATM 12 H HN2 GLL . . . C 2 35.517 10.21 -3.11 1 17.21 ? HN2 GLL 300 B 1 HETATM 13 H H2 GLL . . . C 2 34.344 10.722 -6.889 1 18.59 ? H2 GLL 300 B 1 HETATM 14 H H3 GLL . . . C 2 34.361 9.138 -5.172 1 18 ? H3 GLL 300 B 1 HETATM 15 H HN1' GLL . . . C 2 32.35 12.283 -6.4 1 22 ? HN1' GLL 300 B 1 HETATM 16 H HN2' GLL . . . C 2 32.356 9.711 -3.534 1 17.85 ? HN2' GLL 300 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #