data_2RTJ # _model_server_result.job_id 10HtJoqYXadjfYIsHFJuTA _model_server_result.datetime_utc '2024-11-13 13:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2RTJ # _exptl.entry_id 2RTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCOLURIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTJ _cell.length_a 57.87 _cell.length_b 57.87 _cell.length_c 174.32 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 N4 O2' _chem_comp.formula_weight 142.116 _chem_comp.id GLL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCOLURIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLL doub 74 n n C1 N1 GLL sing 75 n n C1 N2 GLL sing 76 n n N1 C2 GLL sing 77 n n N1 HN1 GLL sing 78 n n N2 C3 GLL sing 79 n n N2 HN2 GLL sing 80 n n C2 C3 GLL sing 81 n n C2 N1' GLL sing 82 n n C2 H2 GLL sing 83 n n C3 N2' GLL sing 84 n n C3 H3 GLL sing 85 n n N1' C1' GLL sing 86 n n N1' HN1' GLL sing 87 n n N2' C1' GLL sing 88 n n N2' HN2' GLL sing 89 n n C1' O1' GLL doub 90 n n # _atom_sites.entry_id 2RTJ _atom_sites.fract_transf_matrix[1][1] 0.01728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLL A 1 300 300 GLL GLL . C 3 FMT A 1 301 301 FMT FMT . D 4 HOH A 1 136 136 HOH HOH . D 4 HOH A 2 143 143 HOH HOH . D 4 HOH A 3 144 144 HOH HOH . D 4 HOH A 4 145 145 HOH HOH . D 4 HOH A 5 152 152 HOH HOH . D 4 HOH A 6 173 173 HOH HOH . D 4 HOH A 7 175 175 HOH HOH . D 4 HOH A 8 188 188 HOH HOH . D 4 HOH A 9 192 192 HOH HOH . D 4 HOH A 10 193 193 HOH HOH . D 4 HOH A 11 205 205 HOH HOH . D 4 HOH A 12 207 207 HOH HOH . D 4 HOH A 13 212 212 HOH HOH . D 4 HOH A 14 224 224 HOH HOH . D 4 HOH A 15 228 228 HOH HOH . D 4 HOH A 16 231 231 HOH HOH . D 4 HOH A 17 233 233 HOH HOH . D 4 HOH A 18 234 234 HOH HOH . D 4 HOH A 19 244 244 HOH HOH . D 4 HOH A 20 251 251 HOH HOH . D 4 HOH A 21 253 253 HOH HOH . D 4 HOH A 22 264 264 HOH HOH . D 4 HOH A 23 274 274 HOH HOH . D 4 HOH A 24 278 278 HOH HOH . D 4 HOH A 25 302 302 HOH HOH . D 4 HOH A 26 305 305 HOH HOH . D 4 HOH A 27 319 319 HOH HOH . D 4 HOH A 28 341 341 HOH HOH . D 4 HOH A 29 354 354 HOH HOH . D 4 HOH A 30 358 358 HOH HOH . D 4 HOH A 31 371 371 HOH HOH . D 4 HOH A 32 380 380 HOH HOH . D 4 HOH A 33 383 383 HOH HOH . D 4 HOH A 34 495 495 HOH HOH . D 4 HOH A 35 507 507 HOH HOH . D 4 HOH A 36 546 546 HOH HOH . D 4 HOH A 37 558 558 HOH HOH . D 4 HOH A 38 581 581 HOH HOH . D 4 HOH A 39 597 597 HOH HOH . D 4 HOH A 40 600 600 HOH HOH . D 4 HOH A 41 606 606 HOH HOH . D 4 HOH A 42 609 609 HOH HOH . D 4 HOH A 43 614 614 HOH HOH . D 4 HOH A 44 624 624 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLL . . . B 2 13.637 -0.666 -8.247 1 22.49 ? C1 GLL 300 A 1 HETATM 2 O O1 GLL . . . B 2 14.778 -0.716 -7.849 1 23.21 ? O1 GLL 300 A 1 HETATM 3 N N1 GLL . . . B 2 13.264 -0.416 -9.464 1 22 ? N1 GLL 300 A 1 HETATM 4 N N2 GLL . . . B 2 12.606 -0.858 -7.483 1 21.46 ? N2 GLL 300 A 1 HETATM 5 C C2 GLL . . . B 2 11.777 -0.343 -9.604 1 20.35 ? C2 GLL 300 A 1 HETATM 6 C C3 GLL . . . B 2 11.3 -0.719 -8.196 1 21.65 ? C3 GLL 300 A 1 HETATM 7 N N1' GLL . . . B 2 11.226 1.038 -9.732 1 20.23 ? N1' GLL 300 A 1 HETATM 8 N N2' GLL . . . B 2 10.448 0.457 -7.827 1 21.11 ? N2' GLL 300 A 1 HETATM 9 C C1' GLL . . . B 2 10.496 1.403 -8.722 1 19.86 ? C1' GLL 300 A 1 HETATM 10 O O1' GLL . . . B 2 9.933 2.463 -8.612 1 20.64 ? O1' GLL 300 A 1 HETATM 11 H HN1 GLL . . . B 2 13.908 -0.291 -10.212 1 22.09 ? HN1 GLL 300 A 1 HETATM 12 H HN2 GLL . . . B 2 12.685 -1.074 -6.543 1 21.07 ? HN2 GLL 300 A 1 HETATM 13 H H2 GLL . . . B 2 11.408 -0.993 -10.377 1 21.14 ? H2 GLL 300 A 1 HETATM 14 H H3 GLL . . . B 2 10.737 -1.638 -8.175 1 21.63 ? H3 GLL 300 A 1 HETATM 15 H HN1' GLL . . . B 2 11.384 1.637 -10.506 1 20.24 ? HN1' GLL 300 A 1 HETATM 16 H HN2' GLL . . . B 2 9.891 0.532 -7.014 1 20.54 ? HN2' GLL 300 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #