data_2RTK # _model_server_result.job_id fvE7hRG4zwQFMF5TOSN4Sg _model_server_result.datetime_utc '2024-11-23 17:11:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 2RTK # _exptl.entry_id 2RTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.116 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCOLURIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTK _cell.length_a 58.2 _cell.length_b 58.2 _cell.length_c 176.66 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 N4 O2' _chem_comp.formula_weight 142.116 _chem_comp.id GLL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCOLURIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLL doub 76 n n C1 N1 GLL sing 77 n n C1 N2 GLL sing 78 n n N1 C2 GLL sing 79 n n N1 HN1 GLL sing 80 n n N2 C3 GLL sing 81 n n N2 HN2 GLL sing 82 n n C2 C3 GLL sing 83 n n C2 N1' GLL sing 84 n n C2 H2 GLL sing 85 n n C3 N2' GLL sing 86 n n C3 H3 GLL sing 87 n n N1' C1' GLL sing 88 n n N1' HN1' GLL sing 89 n n N2' C1' GLL sing 90 n n N2' HN2' GLL sing 91 n n C1' O1' GLL doub 92 n n # _atom_sites.entry_id 2RTK _atom_sites.fract_transf_matrix[1][1] 0.017182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 301 ACT ACT . C 3 SO4 A 1 137 137 SO4 SO4 . D 4 GLL A 1 300 300 GLL GLL . E 5 HOH A 1 136 136 HOH HOH . E 5 HOH A 2 143 143 HOH HOH . E 5 HOH A 3 144 144 HOH HOH . E 5 HOH A 4 145 145 HOH HOH . E 5 HOH A 5 173 173 HOH HOH . E 5 HOH A 6 175 175 HOH HOH . E 5 HOH A 7 188 188 HOH HOH . E 5 HOH A 8 192 192 HOH HOH . E 5 HOH A 9 193 193 HOH HOH . E 5 HOH A 10 205 205 HOH HOH . E 5 HOH A 11 207 207 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 224 224 HOH HOH . E 5 HOH A 14 228 228 HOH HOH . E 5 HOH A 15 229 229 HOH HOH . E 5 HOH A 16 230 230 HOH HOH . E 5 HOH A 17 231 231 HOH HOH . E 5 HOH A 18 233 233 HOH HOH . E 5 HOH A 19 234 234 HOH HOH . E 5 HOH A 20 244 244 HOH HOH . E 5 HOH A 21 251 251 HOH HOH . E 5 HOH A 22 253 253 HOH HOH . E 5 HOH A 23 264 264 HOH HOH . E 5 HOH A 24 274 274 HOH HOH . E 5 HOH A 25 278 278 HOH HOH . E 5 HOH A 26 303 303 HOH HOH . E 5 HOH A 27 305 305 HOH HOH . E 5 HOH A 28 319 319 HOH HOH . E 5 HOH A 29 341 341 HOH HOH . E 5 HOH A 30 354 354 HOH HOH . E 5 HOH A 31 358 358 HOH HOH . E 5 HOH A 32 371 371 HOH HOH . E 5 HOH A 33 380 380 HOH HOH . E 5 HOH A 34 383 383 HOH HOH . E 5 HOH A 35 495 495 HOH HOH . E 5 HOH A 36 507 507 HOH HOH . E 5 HOH A 37 532 532 HOH HOH . E 5 HOH A 38 546 546 HOH HOH . E 5 HOH A 39 558 558 HOH HOH . E 5 HOH A 40 559 559 HOH HOH . E 5 HOH A 41 565 565 HOH HOH . E 5 HOH A 42 581 581 HOH HOH . E 5 HOH A 43 597 597 HOH HOH . E 5 HOH A 44 599 599 HOH HOH . E 5 HOH A 45 601 601 HOH HOH . E 5 HOH A 46 603 603 HOH HOH . E 5 HOH A 47 606 606 HOH HOH . E 5 HOH A 48 609 609 HOH HOH . E 5 HOH A 49 611 611 HOH HOH . E 5 HOH A 50 614 614 HOH HOH . E 5 HOH A 51 615 615 HOH HOH . E 5 HOH A 52 623 623 HOH HOH . E 5 HOH A 53 624 624 HOH HOH . E 5 HOH A 54 626 626 HOH HOH . E 5 HOH A 55 629 629 HOH HOH . E 5 HOH A 56 633 633 HOH HOH . E 5 HOH A 57 636 636 HOH HOH . E 5 HOH A 58 640 640 HOH HOH . E 5 HOH A 59 641 641 HOH HOH . E 5 HOH A 60 642 642 HOH HOH . E 5 HOH A 61 646 646 HOH HOH . E 5 HOH A 62 647 647 HOH HOH . E 5 HOH A 63 649 649 HOH HOH . E 5 HOH A 64 652 652 HOH HOH . E 5 HOH A 65 653 653 HOH HOH . E 5 HOH A 66 654 654 HOH HOH . E 5 HOH A 67 659 659 HOH HOH . E 5 HOH A 68 663 663 HOH HOH . E 5 HOH A 69 664 664 HOH HOH . E 5 HOH A 70 667 667 HOH HOH . E 5 HOH A 71 672 672 HOH HOH . E 5 HOH A 72 673 673 HOH HOH . E 5 HOH A 73 674 674 HOH HOH . E 5 HOH A 74 675 675 HOH HOH . E 5 HOH A 75 676 676 HOH HOH . E 5 HOH A 76 677 677 HOH HOH . E 5 HOH A 77 680 680 HOH HOH . E 5 HOH A 78 682 682 HOH HOH . E 5 HOH A 79 683 683 HOH HOH . E 5 HOH A 80 687 687 HOH HOH . E 5 HOH A 81 688 688 HOH HOH . E 5 HOH A 82 690 690 HOH HOH . E 5 HOH A 83 692 692 HOH HOH . E 5 HOH A 84 693 693 HOH HOH . E 5 HOH A 85 694 694 HOH HOH . E 5 HOH A 86 695 695 HOH HOH . E 5 HOH A 87 696 696 HOH HOH . E 5 HOH A 88 697 697 HOH HOH . E 5 HOH A 89 699 699 HOH HOH . E 5 HOH A 90 700 700 HOH HOH . E 5 HOH A 91 703 703 HOH HOH . E 5 HOH A 92 704 704 HOH HOH . E 5 HOH A 93 705 705 HOH HOH . E 5 HOH A 94 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLL . . . D 4 13.678 -0.429 -8.399 1 26.6 ? C1 GLL 300 A 1 HETATM 2 O O1 GLL . . . D 4 14.836 -0.38 -8.031 1 30.37 ? O1 GLL 300 A 1 HETATM 3 N N1 GLL . . . D 4 13.209 -0.135 -9.577 1 21.6 ? N1 GLL 300 A 1 HETATM 4 N N2 GLL . . . D 4 12.708 -0.793 -7.6 1 25.03 ? N2 GLL 300 A 1 HETATM 5 C C2 GLL . . . D 4 11.736 -0.268 -9.656 1 17.44 ? C2 GLL 300 A 1 HETATM 6 C C3 GLL . . . D 4 11.327 -0.658 -8.212 1 24.12 ? C3 GLL 300 A 1 HETATM 7 N N1' GLL . . . D 4 11.168 1.1 -9.768 1 21.21 ? N1' GLL 300 A 1 HETATM 8 N N2' GLL . . . D 4 10.451 0.505 -7.827 1 18.13 ? N2' GLL 300 A 1 HETATM 9 C C1' GLL . . . D 4 10.533 1.491 -8.698 1 22.13 ? C1' GLL 300 A 1 HETATM 10 O O1' GLL . . . D 4 10.073 2.596 -8.495 1 21.8 ? O1' GLL 300 A 1 HETATM 11 H HN1 GLL . . . D 4 13.702 0.167 -10.393 1 22.68 ? HN1 GLL 300 A 1 HETATM 12 H HN2 GLL . . . D 4 12.867 -1.128 -6.7 1 25.52 ? HN2 GLL 300 A 1 HETATM 13 H H2 GLL . . . D 4 11.418 -0.935 -10.446 1 18.35 ? H2 GLL 300 A 1 HETATM 14 H H3 GLL . . . D 4 10.781 -1.586 -8.154 1 23.92 ? H3 GLL 300 A 1 HETATM 15 H HN1' GLL . . . D 4 11.303 1.65 -10.637 1 21.31 ? HN1' GLL 300 A 1 HETATM 16 H HN2' GLL . . . D 4 9.857 0.55 -7.039 1 19.15 ? HN2' GLL 300 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #