data_2RTL # _model_server_result.job_id -Bci43JGA7C1vHFOis5A1g _model_server_result.datetime_utc '2025-06-24 06:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rtl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2RTL # _exptl.entry_id 2RTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.326 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-IMINOBIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTL _cell.length_a 58.2 _cell.length_b 58.2 _cell.length_c 173.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O2 S' _chem_comp.formula_weight 243.326 _chem_comp.id IMI _chem_comp.mon_nstd_flag . _chem_comp.name 2-IMINOBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 IMI doub 160 n n C11 O12 IMI sing 161 n n C11 C10 IMI sing 162 n n O12 HO2 IMI sing 163 n n C10 C9 IMI sing 164 n n C10 H101 IMI sing 165 n n C10 H102 IMI sing 166 n n C9 C8 IMI sing 167 n n C9 H91 IMI sing 168 n n C9 H92 IMI sing 169 n n C8 C7 IMI sing 170 n n C8 H81 IMI sing 171 n n C8 H82 IMI sing 172 n n C7 C2 IMI sing 173 n n C7 H71 IMI sing 174 n n C7 H72 IMI sing 175 n n C2 S1 IMI sing 176 n n C2 C4 IMI sing 177 n n C2 H2 IMI sing 178 n n S1 C6 IMI sing 179 n n C6 C5 IMI sing 180 n n C6 H61 IMI sing 181 n n C6 H62 IMI sing 182 n n C5 N1 IMI sing 183 n n C5 C4 IMI sing 184 n n C5 H5 IMI sing 185 n n N1 C3 IMI sing 186 n n N1 HN1 IMI sing 187 n n C3 N3 IMI doub 188 n n C3 N2 IMI sing 189 n n N3 HN3 IMI sing 190 n n N2 C4 IMI sing 191 n n N2 HN2 IMI sing 192 n n C4 H4 IMI sing 193 n n # _atom_sites.entry_id 2RTL _atom_sites.fract_transf_matrix[1][1] 0.017182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 137 137 SO4 SO4 . C 3 IMI A 1 300 300 IMI IMI . D 4 HOH A 1 136 136 HOH HOH . D 4 HOH A 2 138 138 HOH HOH . D 4 HOH A 3 143 143 HOH HOH . D 4 HOH A 4 144 144 HOH HOH . D 4 HOH A 5 145 145 HOH HOH . D 4 HOH A 6 173 173 HOH HOH . D 4 HOH A 7 175 175 HOH HOH . D 4 HOH A 8 188 188 HOH HOH . D 4 HOH A 9 192 192 HOH HOH . D 4 HOH A 10 193 193 HOH HOH . D 4 HOH A 11 207 207 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 224 224 HOH HOH . D 4 HOH A 14 228 228 HOH HOH . D 4 HOH A 15 231 231 HOH HOH . D 4 HOH A 16 233 233 HOH HOH . D 4 HOH A 17 234 234 HOH HOH . D 4 HOH A 18 244 244 HOH HOH . D 4 HOH A 19 251 251 HOH HOH . D 4 HOH A 20 253 253 HOH HOH . D 4 HOH A 21 264 264 HOH HOH . D 4 HOH A 22 274 274 HOH HOH . D 4 HOH A 23 278 278 HOH HOH . D 4 HOH A 24 302 302 HOH HOH . D 4 HOH A 25 305 305 HOH HOH . D 4 HOH A 26 319 319 HOH HOH . D 4 HOH A 27 341 341 HOH HOH . D 4 HOH A 28 354 354 HOH HOH . D 4 HOH A 29 358 358 HOH HOH . D 4 HOH A 30 371 371 HOH HOH . D 4 HOH A 31 380 380 HOH HOH . D 4 HOH A 32 383 383 HOH HOH . D 4 HOH A 33 484 484 HOH HOH . D 4 HOH A 34 495 495 HOH HOH . D 4 HOH A 35 546 546 HOH HOH . D 4 HOH A 36 550 550 HOH HOH . D 4 HOH A 37 560 560 HOH HOH . D 4 HOH A 38 571 571 HOH HOH . D 4 HOH A 39 576 576 HOH HOH . D 4 HOH A 40 600 600 HOH HOH . D 4 HOH A 41 611 611 HOH HOH . D 4 HOH A 42 616 616 HOH HOH . D 4 HOH A 43 617 617 HOH HOH . D 4 HOH A 44 623 623 HOH HOH . D 4 HOH A 45 637 637 HOH HOH . D 4 HOH A 46 642 642 HOH HOH . D 4 HOH A 47 648 648 HOH HOH . D 4 HOH A 48 652 652 HOH HOH . D 4 HOH A 49 656 656 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 IMI . . . C 3 9.624 3.734 -14.244 1 40.14 ? C11 IMI 300 A 1 HETATM 2 O O11 IMI . . . C 3 9.549 2.543 -14.554 1 44.25 ? O11 IMI 300 A 1 HETATM 3 O O12 IMI . . . C 3 8.732 4.544 -14.455 1 39.5 ? O12 IMI 300 A 1 HETATM 4 C C10 IMI . . . C 3 10.922 4.226 -13.565 1 38.58 ? C10 IMI 300 A 1 HETATM 5 C C9 IMI . . . C 3 11.806 3.094 -12.93 1 34.14 ? C9 IMI 300 A 1 HETATM 6 C C8 IMI . . . C 3 11.052 2.413 -11.841 1 29.28 ? C8 IMI 300 A 1 HETATM 7 C C7 IMI . . . C 3 11.951 1.379 -11.135 1 24.32 ? C7 IMI 300 A 1 HETATM 8 C C2 IMI . . . C 3 11.079 0.855 -9.965 1 23.01 ? C2 IMI 300 A 1 HETATM 9 S S1 IMI . . . C 3 10.873 1.943 -8.569 1 21.89 ? S1 IMI 300 A 1 HETATM 10 C C6 IMI . . . C 3 10.071 0.571 -7.717 1 20.85 ? C6 IMI 300 A 1 HETATM 11 C C5 IMI . . . C 3 10.674 -0.763 -8.135 1 21.32 ? C5 IMI 300 A 1 HETATM 12 N N1 IMI . . . C 3 11.828 -1.002 -7.228 1 22.65 ? N1 IMI 300 A 1 HETATM 13 C C3 IMI . . . C 3 12.982 -0.907 -7.843 1 25.9 ? C3 IMI 300 A 1 HETATM 14 N N3 IMI . . . C 3 14.148 -1.069 -7.27 1 27.69 ? N3 IMI 300 A 1 HETATM 15 N N2 IMI . . . C 3 12.835 -0.634 -9.117 1 24.3 ? N2 IMI 300 A 1 HETATM 16 C C4 IMI . . . C 3 11.401 -0.566 -9.522 1 21.67 ? C4 IMI 300 A 1 HETATM 17 H H101 IMI . . . C 3 11.503 4.795 -14.271 1 37.91 ? H101 IMI 300 A 1 HETATM 18 H H102 IMI . . . C 3 10.627 4.894 -12.768 1 38.09 ? H102 IMI 300 A 1 HETATM 19 H H91 IMI . . . C 3 12.186 2.399 -13.664 1 34.19 ? H91 IMI 300 A 1 HETATM 20 H H92 IMI . . . C 3 12.621 3.554 -12.408 1 34.34 ? H92 IMI 300 A 1 HETATM 21 H H81 IMI . . . C 3 10.747 3.158 -11.12 1 29.63 ? H81 IMI 300 A 1 HETATM 22 H H82 IMI . . . C 3 10.167 1.936 -12.23 1 29.07 ? H82 IMI 300 A 1 HETATM 23 H H71 IMI . . . C 3 12.225 0.583 -11.812 1 24.99 ? H71 IMI 300 A 1 HETATM 24 H H72 IMI . . . C 3 12.842 1.854 -10.76 1 24.82 ? H72 IMI 300 A 1 HETATM 25 H H2 IMI . . . C 3 10.08 0.766 -10.357 1 23.04 ? H2 IMI 300 A 1 HETATM 26 H H61 IMI . . . C 3 9.02 0.589 -7.964 1 20.63 ? H61 IMI 300 A 1 HETATM 27 H H62 IMI . . . C 3 10.173 0.7 -6.646 1 20.41 ? H62 IMI 300 A 1 HETATM 28 H H5 IMI . . . C 3 9.98 -1.588 -8.122 1 21.57 ? H5 IMI 300 A 1 HETATM 29 H HN1 IMI . . . C 3 11.723 -1.205 -6.278 1 23.52 ? HN1 IMI 300 A 1 HETATM 30 H HN3 IMI . . . C 3 15.002 -0.993 -7.746 1 26.92 ? HN3 IMI 300 A 1 HETATM 31 H HN2 IMI . . . C 3 13.579 -0.483 -9.734 1 23.9 ? HN2 IMI 300 A 1 HETATM 32 H H4 IMI . . . C 3 11.17 -1.333 -10.25 1 22.02 ? H4 IMI 300 A 1 HETATM 33 H HN32 IMI . . . C 3 14.275 -1.275 -6.32 1 27.11 ? HN32 IMI 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #