data_2RTO # _model_server_result.job_id XzRX_tH8YeX-1kgVl4Dezw _model_server_result.datetime_utc '2024-11-23 17:51:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 2RTO # _exptl.entry_id 2RTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-IMINOBIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTO _cell.length_a 95.06 _cell.length_b 105.84 _cell.length_c 48.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 95.06 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 95.06 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N3 O2 S' _chem_comp.formula_weight 243.326 _chem_comp.id IMI _chem_comp.mon_nstd_flag . _chem_comp.name 2-IMINOBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 IMI doub 160 n n C11 O12 IMI sing 161 n n C11 C10 IMI sing 162 n n O12 HO2 IMI sing 163 n n C10 C9 IMI sing 164 n n C10 H101 IMI sing 165 n n C10 H102 IMI sing 166 n n C9 C8 IMI sing 167 n n C9 H91 IMI sing 168 n n C9 H92 IMI sing 169 n n C8 C7 IMI sing 170 n n C8 H81 IMI sing 171 n n C8 H82 IMI sing 172 n n C7 C2 IMI sing 173 n n C7 H71 IMI sing 174 n n C7 H72 IMI sing 175 n n C2 S1 IMI sing 176 n n C2 C4 IMI sing 177 n n C2 H2 IMI sing 178 n n S1 C6 IMI sing 179 n n C6 C5 IMI sing 180 n n C6 H61 IMI sing 181 n n C6 H62 IMI sing 182 n n C5 N1 IMI sing 183 n n C5 C4 IMI sing 184 n n C5 H5 IMI sing 185 n n N1 C3 IMI sing 186 n n N1 HN1 IMI sing 187 n n C3 N3 IMI doub 188 n n C3 N2 IMI sing 189 n n N3 HN3 IMI sing 190 n n N2 C4 IMI sing 191 n n N2 HN2 IMI sing 192 n n C4 H4 IMI sing 193 n n # _atom_sites.entry_id 2RTO _atom_sites.fract_transf_matrix[1][1] 0.01052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMI B 1 300 300 IMI IMI . D 2 IMI D 1 300 300 IMI IMI . E 3 HOH B 1 515 515 HOH HOH . E 3 HOH B 2 523 523 HOH HOH . E 3 HOH B 3 525 525 HOH HOH . E 3 HOH B 4 548 548 HOH HOH . E 3 HOH B 5 549 549 HOH HOH . E 3 HOH B 6 605 605 HOH HOH . E 3 HOH B 7 606 606 HOH HOH . E 3 HOH B 8 607 607 HOH HOH . E 3 HOH B 9 609 609 HOH HOH . E 3 HOH B 10 613 613 HOH HOH . E 3 HOH B 11 617 617 HOH HOH . E 3 HOH B 12 619 619 HOH HOH . E 3 HOH B 13 620 620 HOH HOH . E 3 HOH B 14 621 621 HOH HOH . E 3 HOH B 15 628 628 HOH HOH . E 3 HOH B 16 629 629 HOH HOH . E 3 HOH B 17 637 637 HOH HOH . E 3 HOH B 18 639 639 HOH HOH . E 3 HOH B 19 643 643 HOH HOH . E 3 HOH B 20 646 646 HOH HOH . E 3 HOH B 21 649 649 HOH HOH . E 3 HOH B 22 653 653 HOH HOH . E 3 HOH B 23 660 660 HOH HOH . E 3 HOH B 24 669 669 HOH HOH . E 3 HOH B 25 689 689 HOH HOH . E 3 HOH B 26 727 727 HOH HOH . E 3 HOH B 27 742 742 HOH HOH . E 3 HOH B 28 803 803 HOH HOH . E 3 HOH B 29 868 868 HOH HOH . E 3 HOH B 30 966 966 HOH HOH . E 3 HOH B 31 972 972 HOH HOH . E 3 HOH B 32 1010 1010 HOH HOH . E 3 HOH B 33 1015 1015 HOH HOH . E 3 HOH B 34 1082 1082 HOH HOH . E 3 HOH B 35 1145 1145 HOH HOH . E 3 HOH B 36 1363 1363 HOH HOH . E 3 HOH B 37 1428 1428 HOH HOH . E 3 HOH B 38 1464 1464 HOH HOH . E 3 HOH B 39 1491 1491 HOH HOH . E 3 HOH B 40 1502 1502 HOH HOH . E 3 HOH B 41 1510 1510 HOH HOH . E 3 HOH B 42 1516 1516 HOH HOH . E 3 HOH B 43 1523 1523 HOH HOH . E 3 HOH B 44 1525 1525 HOH HOH . E 3 HOH B 45 1563 1563 HOH HOH . F 3 HOH D 1 510 510 HOH HOH . F 3 HOH D 2 527 527 HOH HOH . F 3 HOH D 3 550 550 HOH HOH . F 3 HOH D 4 551 551 HOH HOH . F 3 HOH D 5 568 568 HOH HOH . F 3 HOH D 6 589 589 HOH HOH . F 3 HOH D 7 593 593 HOH HOH . F 3 HOH D 8 602 602 HOH HOH . F 3 HOH D 9 612 612 HOH HOH . F 3 HOH D 10 616 616 HOH HOH . F 3 HOH D 11 622 622 HOH HOH . F 3 HOH D 12 624 624 HOH HOH . F 3 HOH D 13 625 625 HOH HOH . F 3 HOH D 14 626 626 HOH HOH . F 3 HOH D 15 635 635 HOH HOH . F 3 HOH D 16 636 636 HOH HOH . F 3 HOH D 17 641 641 HOH HOH . F 3 HOH D 18 642 642 HOH HOH . F 3 HOH D 19 644 644 HOH HOH . F 3 HOH D 20 655 655 HOH HOH . F 3 HOH D 21 656 656 HOH HOH . F 3 HOH D 22 663 663 HOH HOH . F 3 HOH D 23 666 666 HOH HOH . F 3 HOH D 24 671 671 HOH HOH . F 3 HOH D 25 677 677 HOH HOH . F 3 HOH D 26 679 679 HOH HOH . F 3 HOH D 27 688 688 HOH HOH . F 3 HOH D 28 697 697 HOH HOH . F 3 HOH D 29 698 698 HOH HOH . F 3 HOH D 30 701 701 HOH HOH . F 3 HOH D 31 802 802 HOH HOH . F 3 HOH D 32 830 830 HOH HOH . F 3 HOH D 33 843 843 HOH HOH . F 3 HOH D 34 926 926 HOH HOH . F 3 HOH D 35 931 931 HOH HOH . F 3 HOH D 36 933 933 HOH HOH . F 3 HOH D 37 952 952 HOH HOH . F 3 HOH D 38 968 968 HOH HOH . F 3 HOH D 39 1090 1090 HOH HOH . F 3 HOH D 40 1151 1151 HOH HOH . F 3 HOH D 41 1322 1322 HOH HOH . F 3 HOH D 42 1390 1390 HOH HOH . F 3 HOH D 43 1475 1475 HOH HOH . F 3 HOH D 44 1478 1478 HOH HOH . F 3 HOH D 45 1484 1484 HOH HOH . F 3 HOH D 46 1503 1503 HOH HOH . F 3 HOH D 47 1505 1505 HOH HOH . F 3 HOH D 48 1513 1513 HOH HOH . F 3 HOH D 49 1521 1521 HOH HOH . F 3 HOH D 50 1533 1533 HOH HOH . F 3 HOH D 51 1562 1562 HOH HOH . F 3 HOH D 52 1603 1603 HOH HOH . F 3 HOH D 53 1625 1625 HOH HOH . F 3 HOH D 54 1655 1655 HOH HOH . F 3 HOH D 55 1674 1674 HOH HOH . F 3 HOH D 56 1701 1701 HOH HOH . F 3 HOH D 57 1704 1704 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 IMI . . . D 2 22.135 3.405 16.964 1 43.84 ? C11 IMI 300 D 1 HETATM 2 O O11 IMI . . . D 2 21.495 2.439 17.365 1 46.35 ? O11 IMI 300 D 1 HETATM 3 O O12 IMI . . . D 2 23.276 3.253 16.575 1 46.37 ? O12 IMI 300 D 1 HETATM 4 C C10 IMI . . . D 2 21.516 4.823 16.958 1 40.92 ? C10 IMI 300 D 1 HETATM 5 C C9 IMI . . . D 2 20.114 4.879 16.287 1 40 ? C9 IMI 300 D 1 HETATM 6 C C8 IMI . . . D 2 20.146 4.291 14.884 1 35.62 ? C8 IMI 300 D 1 HETATM 7 C C7 IMI . . . D 2 18.78 4.538 14.167 1 35.54 ? C7 IMI 300 D 1 HETATM 8 C C2 IMI . . . D 2 18.98 4.191 12.653 1 34.84 ? C2 IMI 300 D 1 HETATM 9 S S1 IMI . . . D 2 19.767 5.392 11.568 1 26.09 ? S1 IMI 300 D 1 HETATM 10 C C6 IMI . . . D 2 19.121 4.482 10.162 1 31.53 ? C6 IMI 300 D 1 HETATM 11 C C5 IMI . . . D 2 17.823 3.679 10.472 1 33.88 ? C5 IMI 300 D 1 HETATM 12 N N1 IMI . . . D 2 16.619 4.465 10.071 1 33.17 ? N1 IMI 300 D 1 HETATM 13 C C3 IMI . . . D 2 16.026 5.009 11.101 1 37.44 ? C3 IMI 300 D 1 HETATM 14 N N3 IMI . . . D 2 15.041 5.854 11.028 1 41.61 ? N3 IMI 300 D 1 HETATM 15 N N2 IMI . . . D 2 16.532 4.616 12.232 1 36.38 ? N2 IMI 300 D 1 HETATM 16 C C4 IMI . . . D 2 17.666 3.654 12.03 1 36.44 ? C4 IMI 300 D 1 HETATM 17 H H101 IMI . . . D 2 21.431 5.165 17.979 1 39.97 ? H101 IMI 300 D 1 HETATM 18 H H102 IMI . . . D 2 22.184 5.489 16.436 1 40.58 ? H102 IMI 300 D 1 HETATM 19 H H91 IMI . . . D 2 19.395 4.345 16.882 1 40 ? H91 IMI 300 D 1 HETATM 20 H H92 IMI . . . D 2 19.793 5.911 16.225 1 39.2 ? H92 IMI 300 D 1 HETATM 21 H H81 IMI . . . D 2 20.949 4.739 14.316 1 37.9 ? H81 IMI 300 D 1 HETATM 22 H H82 IMI . . . D 2 20.327 3.229 14.947 1 36.96 ? H82 IMI 300 D 1 HETATM 23 H H71 IMI . . . D 2 18.027 3.902 14.606 1 34.35 ? H71 IMI 300 D 1 HETATM 24 H H72 IMI . . . D 2 18.471 5.568 14.268 1 35.66 ? H72 IMI 300 D 1 HETATM 25 H H2 IMI . . . D 2 19.638 3.333 12.638 1 33.65 ? H2 IMI 300 D 1 HETATM 26 H H61 IMI . . . D 2 19.888 3.794 9.829 1 30.28 ? H61 IMI 300 D 1 HETATM 27 H H62 IMI . . . D 2 18.925 5.185 9.365 1 31.87 ? H62 IMI 300 D 1 HETATM 28 H H5 IMI . . . D 2 17.807 2.699 10.019 1 34.48 ? H5 IMI 300 D 1 HETATM 29 H HN1 IMI . . . D 2 16.316 4.556 9.147 1 34.86 ? HN1 IMI 300 D 1 HETATM 30 H HN3 IMI . . . D 2 14.613 6.25 11.813 1 41.31 ? HN3 IMI 300 D 1 HETATM 31 H HN2 IMI . . . D 2 16.211 4.911 13.111 1 37.6 ? HN2 IMI 300 D 1 HETATM 32 H H4 IMI . . . D 2 17.404 2.674 12.398 1 36.95 ? H4 IMI 300 D 1 HETATM 33 H HN32 IMI . . . D 2 14.645 6.166 10.188 1 40.88 ? HN32 IMI 300 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #