data_2RTP # _model_server_result.job_id eWL06KnurhZyek3eHk_Jxg _model_server_result.datetime_utc '2024-11-13 13:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rtp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2RTP # _exptl.entry_id 2RTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-IMINOBIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RTP _cell.length_a 94.97 _cell.length_b 105.4 _cell.length_c 47.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.97 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 94.97 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N3 O2 S' _chem_comp.formula_weight 243.326 _chem_comp.id IMI _chem_comp.mon_nstd_flag . _chem_comp.name 2-IMINOBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 IMI doub 160 n n C11 O12 IMI sing 161 n n C11 C10 IMI sing 162 n n O12 HO2 IMI sing 163 n n C10 C9 IMI sing 164 n n C10 H101 IMI sing 165 n n C10 H102 IMI sing 166 n n C9 C8 IMI sing 167 n n C9 H91 IMI sing 168 n n C9 H92 IMI sing 169 n n C8 C7 IMI sing 170 n n C8 H81 IMI sing 171 n n C8 H82 IMI sing 172 n n C7 C2 IMI sing 173 n n C7 H71 IMI sing 174 n n C7 H72 IMI sing 175 n n C2 S1 IMI sing 176 n n C2 C4 IMI sing 177 n n C2 H2 IMI sing 178 n n S1 C6 IMI sing 179 n n C6 C5 IMI sing 180 n n C6 H61 IMI sing 181 n n C6 H62 IMI sing 182 n n C5 N1 IMI sing 183 n n C5 C4 IMI sing 184 n n C5 H5 IMI sing 185 n n N1 C3 IMI sing 186 n n N1 HN1 IMI sing 187 n n C3 N3 IMI doub 188 n n C3 N2 IMI sing 189 n n N3 HN3 IMI sing 190 n n N2 C4 IMI sing 191 n n N2 HN2 IMI sing 192 n n C4 H4 IMI sing 193 n n # _atom_sites.entry_id 2RTP _atom_sites.fract_transf_matrix[1][1] 0.01053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMI B 1 300 300 IMI IMI . D 2 IMI D 1 300 300 IMI IMI . E 3 HOH B 1 523 523 HOH HOH . E 3 HOH B 2 525 525 HOH HOH . E 3 HOH B 3 549 549 HOH HOH . E 3 HOH B 4 605 605 HOH HOH . E 3 HOH B 5 606 606 HOH HOH . E 3 HOH B 6 607 607 HOH HOH . E 3 HOH B 7 609 609 HOH HOH . E 3 HOH B 8 613 613 HOH HOH . E 3 HOH B 9 617 617 HOH HOH . E 3 HOH B 10 619 619 HOH HOH . E 3 HOH B 11 620 620 HOH HOH . E 3 HOH B 12 621 621 HOH HOH . E 3 HOH B 13 628 628 HOH HOH . E 3 HOH B 14 629 629 HOH HOH . E 3 HOH B 15 637 637 HOH HOH . E 3 HOH B 16 639 639 HOH HOH . E 3 HOH B 17 643 643 HOH HOH . E 3 HOH B 18 646 646 HOH HOH . E 3 HOH B 19 649 649 HOH HOH . E 3 HOH B 20 653 653 HOH HOH . E 3 HOH B 21 660 660 HOH HOH . E 3 HOH B 22 669 669 HOH HOH . E 3 HOH B 23 727 727 HOH HOH . E 3 HOH B 24 742 742 HOH HOH . E 3 HOH B 25 972 972 HOH HOH . E 3 HOH B 26 1010 1010 HOH HOH . E 3 HOH B 27 1015 1015 HOH HOH . E 3 HOH B 28 1016 1016 HOH HOH . E 3 HOH B 29 1082 1082 HOH HOH . E 3 HOH B 30 1145 1145 HOH HOH . E 3 HOH B 31 1363 1363 HOH HOH . E 3 HOH B 32 1464 1464 HOH HOH . E 3 HOH B 33 1491 1491 HOH HOH . E 3 HOH B 34 1502 1502 HOH HOH . E 3 HOH B 35 1510 1510 HOH HOH . E 3 HOH B 36 1516 1516 HOH HOH . E 3 HOH B 37 1523 1523 HOH HOH . E 3 HOH B 38 1525 1525 HOH HOH . E 3 HOH B 39 1718 1718 HOH HOH . E 3 HOH B 40 1730 1730 HOH HOH . E 3 HOH B 41 1733 1733 HOH HOH . E 3 HOH B 42 1740 1740 HOH HOH . E 3 HOH B 43 1743 1743 HOH HOH . E 3 HOH B 44 1751 1751 HOH HOH . E 3 HOH B 45 1756 1756 HOH HOH . E 3 HOH B 46 1771 1771 HOH HOH . E 3 HOH B 47 1787 1787 HOH HOH . E 3 HOH B 48 1797 1797 HOH HOH . F 3 HOH D 1 527 527 HOH HOH . F 3 HOH D 2 548 548 HOH HOH . F 3 HOH D 3 550 550 HOH HOH . F 3 HOH D 4 551 551 HOH HOH . F 3 HOH D 5 568 568 HOH HOH . F 3 HOH D 6 589 589 HOH HOH . F 3 HOH D 7 602 602 HOH HOH . F 3 HOH D 8 612 612 HOH HOH . F 3 HOH D 9 616 616 HOH HOH . F 3 HOH D 10 622 622 HOH HOH . F 3 HOH D 11 624 624 HOH HOH . F 3 HOH D 12 625 625 HOH HOH . F 3 HOH D 13 626 626 HOH HOH . F 3 HOH D 14 635 635 HOH HOH . F 3 HOH D 15 636 636 HOH HOH . F 3 HOH D 16 641 641 HOH HOH . F 3 HOH D 17 642 642 HOH HOH . F 3 HOH D 18 655 655 HOH HOH . F 3 HOH D 19 656 656 HOH HOH . F 3 HOH D 20 663 663 HOH HOH . F 3 HOH D 21 671 671 HOH HOH . F 3 HOH D 22 679 679 HOH HOH . F 3 HOH D 23 680 680 HOH HOH . F 3 HOH D 24 688 688 HOH HOH . F 3 HOH D 25 689 689 HOH HOH . F 3 HOH D 26 697 697 HOH HOH . F 3 HOH D 27 698 698 HOH HOH . F 3 HOH D 28 701 701 HOH HOH . F 3 HOH D 29 802 802 HOH HOH . F 3 HOH D 30 830 830 HOH HOH . F 3 HOH D 31 843 843 HOH HOH . F 3 HOH D 32 926 926 HOH HOH . F 3 HOH D 33 931 931 HOH HOH . F 3 HOH D 34 933 933 HOH HOH . F 3 HOH D 35 952 952 HOH HOH . F 3 HOH D 36 966 966 HOH HOH . F 3 HOH D 37 968 968 HOH HOH . F 3 HOH D 38 1090 1090 HOH HOH . F 3 HOH D 39 1390 1390 HOH HOH . F 3 HOH D 40 1475 1475 HOH HOH . F 3 HOH D 41 1478 1478 HOH HOH . F 3 HOH D 42 1484 1484 HOH HOH . F 3 HOH D 43 1503 1503 HOH HOH . F 3 HOH D 44 1505 1505 HOH HOH . F 3 HOH D 45 1513 1513 HOH HOH . F 3 HOH D 46 1521 1521 HOH HOH . F 3 HOH D 47 1533 1533 HOH HOH . F 3 HOH D 48 1562 1562 HOH HOH . F 3 HOH D 49 1603 1603 HOH HOH . F 3 HOH D 50 1615 1615 HOH HOH . F 3 HOH D 51 1625 1625 HOH HOH . F 3 HOH D 52 1627 1627 HOH HOH . F 3 HOH D 53 1674 1674 HOH HOH . F 3 HOH D 54 1677 1677 HOH HOH . F 3 HOH D 55 1701 1701 HOH HOH . F 3 HOH D 56 1704 1704 HOH HOH . F 3 HOH D 57 1710 1710 HOH HOH . F 3 HOH D 58 1711 1711 HOH HOH . F 3 HOH D 59 1719 1719 HOH HOH . F 3 HOH D 60 1724 1724 HOH HOH . F 3 HOH D 61 1726 1726 HOH HOH . F 3 HOH D 62 1728 1728 HOH HOH . F 3 HOH D 63 1734 1734 HOH HOH . F 3 HOH D 64 1754 1754 HOH HOH . F 3 HOH D 65 1760 1760 HOH HOH . F 3 HOH D 66 1762 1762 HOH HOH . F 3 HOH D 67 1763 1763 HOH HOH . F 3 HOH D 68 1764 1764 HOH HOH . F 3 HOH D 69 1765 1765 HOH HOH . F 3 HOH D 70 1770 1770 HOH HOH . F 3 HOH D 71 1773 1773 HOH HOH . F 3 HOH D 72 1776 1776 HOH HOH . F 3 HOH D 73 1777 1777 HOH HOH . F 3 HOH D 74 1778 1778 HOH HOH . F 3 HOH D 75 1785 1785 HOH HOH . F 3 HOH D 76 1789 1789 HOH HOH . F 3 HOH D 77 1795 1795 HOH HOH . F 3 HOH D 78 1800 1800 HOH HOH . F 3 HOH D 79 1805 1805 HOH HOH . F 3 HOH D 80 1808 1808 HOH HOH . F 3 HOH D 81 1812 1812 HOH HOH . F 3 HOH D 82 1815 1815 HOH HOH . F 3 HOH D 83 1818 1818 HOH HOH . F 3 HOH D 84 1820 1820 HOH HOH . F 3 HOH D 85 1824 1824 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 IMI . . . C 2 29.442 14.247 -9.632 1 37.88 ? C11 IMI 300 B 1 HETATM 2 O O11 IMI . . . C 2 30.117 13.715 -10.512 1 37.9 ? O11 IMI 300 B 1 HETATM 3 O O12 IMI . . . C 2 28.241 14.049 -9.468 1 36.69 ? O12 IMI 300 B 1 HETATM 4 C C10 IMI . . . C 2 30.157 15.241 -8.703 1 31.78 ? C10 IMI 300 B 1 HETATM 5 C C9 IMI . . . C 2 31.574 14.787 -8.331 1 32.04 ? C9 IMI 300 B 1 HETATM 6 C C8 IMI . . . C 2 31.524 13.358 -7.768 1 28.58 ? C8 IMI 300 B 1 HETATM 7 C C7 IMI . . . C 2 32.873 13.048 -7.085 1 28.75 ? C7 IMI 300 B 1 HETATM 8 C C2 IMI . . . C 2 32.75 11.717 -6.253 1 30.54 ? C2 IMI 300 B 1 HETATM 9 S S1 IMI . . . C 2 31.83 11.753 -4.712 1 30.19 ? S1 IMI 300 B 1 HETATM 10 C C6 IMI . . . C 2 32.856 10.431 -4.06 1 27.77 ? C6 IMI 300 B 1 HETATM 11 C C5 IMI . . . C 2 34.177 10.223 -4.789 1 28.36 ? C5 IMI 300 B 1 HETATM 12 N N1 IMI . . . C 2 35.306 10.802 -4.004 1 25.8 ? N1 IMI 300 B 1 HETATM 13 C C3 IMI . . . C 2 35.718 11.93 -4.508 1 32.18 ? C3 IMI 300 B 1 HETATM 14 N N3 IMI . . . C 2 36.682 12.671 -4.056 1 33.81 ? N3 IMI 300 B 1 HETATM 15 N N2 IMI . . . C 2 35.036 12.258 -5.559 1 32.28 ? N2 IMI 300 B 1 HETATM 16 C C4 IMI . . . C 2 34.158 11.155 -6.023 1 29.49 ? C4 IMI 300 B 1 HETATM 17 H H101 IMI . . . C 2 29.579 15.336 -7.802 1 33.11 ? H101 IMI 300 B 1 HETATM 18 H H102 IMI . . . C 2 30.197 16.206 -9.188 1 33.28 ? H102 IMI 300 B 1 HETATM 19 H H91 IMI . . . C 2 32.223 14.855 -9.184 1 30.65 ? H91 IMI 300 B 1 HETATM 20 H H92 IMI . . . C 2 31.96 15.459 -7.579 1 31.3 ? H92 IMI 300 B 1 HETATM 21 H H81 IMI . . . C 2 30.713 13.265 -7.062 1 29.07 ? H81 IMI 300 B 1 HETATM 22 H H82 IMI . . . C 2 31.368 12.654 -8.571 1 28.72 ? H82 IMI 300 B 1 HETATM 23 H H71 IMI . . . C 2 33.634 12.943 -7.841 1 28.76 ? H71 IMI 300 B 1 HETATM 24 H H72 IMI . . . C 2 33.157 13.862 -6.432 1 28.39 ? H72 IMI 300 B 1 HETATM 25 H H2 IMI . . . C 2 32.236 11.004 -6.878 1 30.26 ? H2 IMI 300 B 1 HETATM 26 H H61 IMI . . . C 2 32.277 9.524 -4.129 1 28.04 ? H61 IMI 300 B 1 HETATM 27 H H62 IMI . . . C 2 33.045 10.63 -3.017 1 29.15 ? H62 IMI 300 B 1 HETATM 28 H H5 IMI . . . C 2 34.381 9.191 -5.032 1 27.79 ? H5 IMI 300 B 1 HETATM 29 H HN1 IMI . . . C 2 35.69 10.384 -3.211 1 28.3 ? HN1 IMI 300 B 1 HETATM 30 H HN3 IMI . . . C 2 36.951 13.514 -4.475 1 33.68 ? HN3 IMI 300 B 1 HETATM 31 H HN2 IMI . . . C 2 35.087 13.126 -6 1 30.88 ? HN2 IMI 300 B 1 HETATM 32 H H4 IMI . . . C 2 34.581 10.688 -6.901 1 30.48 ? H4 IMI 300 B 1 HETATM 33 H HN32 IMI . . . C 2 37.219 12.456 -3.265 1 34.26 ? HN32 IMI 300 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #