data_2SEB # _model_server_result.job_id DSESmwaWsYHle1u7eQk9dg _model_server_result.datetime_utc '2025-07-02 07:07:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2seb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 2SEB # _exptl.entry_id 2SEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2SEB _cell.length_a 78.53 _cell.length_b 100.28 _cell.length_c 100.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2SEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 C SG CYS 93 D CYS 93 1_555 C SG CYS 113 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 118 A ASN 118 1_555 E C1 NAG . A NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2SEB _atom_sites.fract_transf_matrix[1][1] 0.012734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 900 900 NAG NAG . F 6 HOH A 1 902 902 HOH HOH . F 6 HOH A 2 903 903 HOH HOH . F 6 HOH A 3 905 905 HOH HOH . F 6 HOH A 4 918 918 HOH HOH . F 6 HOH A 5 923 923 HOH HOH . F 6 HOH A 6 924 924 HOH HOH . F 6 HOH A 7 925 925 HOH HOH . F 6 HOH A 8 926 926 HOH HOH . F 6 HOH A 9 927 927 HOH HOH . F 6 HOH A 10 946 946 HOH HOH . F 6 HOH A 11 947 947 HOH HOH . F 6 HOH A 12 949 949 HOH HOH . F 6 HOH A 13 954 954 HOH HOH . F 6 HOH A 14 956 956 HOH HOH . F 6 HOH A 15 957 957 HOH HOH . G 6 HOH B 1 901 901 HOH HOH . G 6 HOH B 2 904 904 HOH HOH . G 6 HOH B 3 906 906 HOH HOH . G 6 HOH B 4 913 913 HOH HOH . G 6 HOH B 5 914 914 HOH HOH . G 6 HOH B 6 916 916 HOH HOH . G 6 HOH B 7 917 917 HOH HOH . G 6 HOH B 8 919 919 HOH HOH . G 6 HOH B 9 920 920 HOH HOH . G 6 HOH B 10 921 921 HOH HOH . G 6 HOH B 11 922 922 HOH HOH . G 6 HOH B 12 928 928 HOH HOH . G 6 HOH B 13 942 942 HOH HOH . G 6 HOH B 14 943 943 HOH HOH . G 6 HOH B 15 958 958 HOH HOH . G 6 HOH B 16 959 959 HOH HOH . G 6 HOH B 17 960 960 HOH HOH . G 6 HOH B 18 961 961 HOH HOH . G 6 HOH B 19 962 962 HOH HOH . H 6 HOH D 1 907 907 HOH HOH . H 6 HOH D 2 908 908 HOH HOH . H 6 HOH D 3 909 909 HOH HOH . H 6 HOH D 4 910 910 HOH HOH . H 6 HOH D 5 911 911 HOH HOH . H 6 HOH D 6 912 912 HOH HOH . H 6 HOH D 7 930 930 HOH HOH . H 6 HOH D 8 931 931 HOH HOH . H 6 HOH D 9 932 932 HOH HOH . H 6 HOH D 10 933 933 HOH HOH . H 6 HOH D 11 934 934 HOH HOH . H 6 HOH D 12 935 935 HOH HOH . H 6 HOH D 13 936 936 HOH HOH . H 6 HOH D 14 937 937 HOH HOH . H 6 HOH D 15 938 938 HOH HOH . H 6 HOH D 16 950 950 HOH HOH . H 6 HOH D 17 951 951 HOH HOH . H 6 HOH D 18 952 952 HOH HOH . H 6 HOH D 19 953 953 HOH HOH . H 6 HOH D 20 955 955 HOH HOH . I 6 HOH E 1 915 915 HOH HOH . I 6 HOH E 2 929 929 HOH HOH . I 6 HOH E 3 939 939 HOH HOH . I 6 HOH E 4 940 940 HOH HOH . I 6 HOH E 5 941 941 HOH HOH . I 6 HOH E 6 944 944 HOH HOH . I 6 HOH E 7 945 945 HOH HOH . I 6 HOH E 8 948 948 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -11.436 126.788 36.703 1 64.22 ? C1 NAG 900 A 1 HETATM 2 C C2 NAG . . . E 5 -10.53 127.336 37.825 1 68.17 ? C2 NAG 900 A 1 HETATM 3 C C3 NAG . . . E 5 -11.246 127.546 39.189 1 71.87 ? C3 NAG 900 A 1 HETATM 4 C C4 NAG . . . E 5 -12.439 128.452 38.876 1 77.04 ? C4 NAG 900 A 1 HETATM 5 C C5 NAG . . . E 5 -13.352 127.751 37.887 1 75.01 ? C5 NAG 900 A 1 HETATM 6 C C6 NAG . . . E 5 -14.581 128.638 37.658 1 75.33 ? C6 NAG 900 A 1 HETATM 7 C C7 NAG . . . E 5 -8.153 127.013 38.012 1 60.75 ? C7 NAG 900 A 1 HETATM 8 C C8 NAG . . . E 5 -7.023 126 38.133 1 55.8 ? C8 NAG 900 A 1 HETATM 9 N N2 NAG . . . E 5 -9.366 126.477 37.964 1 67.92 ? N2 NAG 900 A 1 HETATM 10 O O3 NAG . . . E 5 -10.34 128.197 40.076 1 70.45 ? O3 NAG 900 A 1 HETATM 11 O O4 NAG . . . E 5 -13.232 128.907 40.029 1 84.89 ? O4 NAG 900 A 1 HETATM 12 O O5 NAG . . . E 5 -12.665 127.573 36.612 1 70.5 ? O5 NAG 900 A 1 HETATM 13 O O6 NAG . . . E 5 -15.301 128.227 36.522 1 81.44 ? O6 NAG 900 A 1 HETATM 14 O O7 NAG . . . E 5 -7.965 128.241 38.026 1 59.46 ? O7 NAG 900 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #